ISTco4

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AGFE01000044.1 ND Thermobacillus composti
Thermobacillus composti KWC4
DNA section
IS Length : 1577 bp

Ends


IR Length : 14/22

IRL : GTTAGAGTAAAATTTGTGTTGGGGTAAAGATTGGAAAAAGCGGGCATAGA
IRR : GTCTGAGTCAAGCCAGTGTGGGCACTTTTTTTGGGGATGATGGATCACGC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAACTCCTTACAAACAAC0

DNA sequence

GTTAGAGTAAAATTTGTGTTGGGGTAAAGATTGGAAAAAGCGGGCATAGAAAGAGAGCCTCTCCTTTGGTAGAGTAGAATTTGGCAAAAAACACACACTC
AAAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAGGGTCTGTTCACCGCC
GCGATGAGAACCGCGCTGGAGAAGTTGGATGAAATCATTCTGGAGCAACGGGATCGCGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCATGAACA
CCGTGTTTGGCAACATCCGCTTCAAGCGAAGGTTGTACATGGATCGCCAAACCGGCAAATACGTGTACCTGCTCGACCAGCACTTGCGATTTGAAGGGCG
AGGGAAAGTCAGTCCGCATCTGCTGGAAACGGCCATTGCCTTTGCGGCAGAGGGGCCGTCGTACCGGGACAGCGCCAGACGGCTTGAGCAACTGTTGGGC
TATCCGGTACTCAGCCACGAGGCCATACGGGAGAAGCTGATTGAGCAAGCGGAGAAGCCGGTGAAGGCTGTGGAAAAGCGCAAGGCCAGGGTGCTGTTCG
TGGAAGTGGATGGCCTGTACACGAAACTGCAGCGGCGGAAGCGGCACGGGATGGAGCATGCGATCGCCGTGGTGCATGAGGGATGGGAGCAGGTCGGCAA
GCGTGTGCGGCTTACGAACAAGCAGCATTATCTGCATCGGAGCGAGGGCGACTTTTGGGAAGGGTTTGGCGACTTTCTGACCGAACAGTACGCGATCGAC
GAGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCCAGTTGGATCGGGGAATGCGAATCGTATTTTCACAAGTGCATCTACATGCTGGATCGGTTTCATG
TGGCACGCGATCTGAAGCGGTTTGTGGGACACCTGCCGAAGATATGGAAAGACGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGC
CGTGGAGAGCGTAGCGATCGAGGAGATTGCGCCTGACAAACGGGATGAATGGACCGCATACAAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGAT
TACCGGAAGACACTGGAAGCAAACGGCATCGACACGACTGGCATGAGGCCAATGGGGAGTGCGGAAGCCCAGATGCGGGTGTTGGCCAAACGGACGAAGC
GCGGAGGATATAGCTGGAGTGAACGAGGCTCCCGGGCGATGCTTACGACCGTCATGCGAAGCAAACAGGCCGGATGGCTGGAAGAAGCCGACGAGCACAA
AGTCGAGACACCAGAGCGGGTGTTCAGTGTACGGAAGATCTTGAAAGACGCCATACGACCGGCAAAGGGATGCGTTGACGGGATGATCCGGCTGCTCCGA
AGCCAATGGCAAAGCCGCCCGACCGGACTGGCATTAAAAGGTCTCAAAGGATACTGATACCAGATATTTAAAGCGGTTGCCGAGGGAAGAAAAAATGAAA
CCGCTAACAAGGGATTGGCTCTTTTTCGCGTGATCCATCATCCCCAAAAAAAGTGCCCACACTGGCTTGACTCAGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp446 aa1171454+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQHFTTAIPAMKELEEWMFRKMQGLFTAAMRTALEKLDEIILEQRDRERYRVKAERETSMNTVFGNIRFKRRLYMDRQTGKYVYLLDQHLRFEGRGKVSP
HLLETAIAFAAEGPSYRDSARRLEQLLGYPVLSHEAIREKLIEQAEKPVKAVEKRKARVLFVEVDGLYTKLQRRKRHGMEHAIAVVHEGWEQVGKRVRLT
NKQHYLHRSEGDFWEGFGDFLTEQYAIDEDTWLVVGGDGASWIGECESYFHKCIYMLDRFHVARDLKRFVGHLPKIWKDARQALARQEPAALMAAVESVA
IEEIAPDKRDEWTAYKSFLRRHRKHLEDYRKTLEANGIDTTGMRPMGSAEAQMRVLAKRTKRGGYSWSERGSRAMLTTVMRSKQAGWLEEADEHKVETPE
RVFSVRKILKDAIRPAKGCVDGMIRLLRSQWQSRPTGLALKGLKGY

 

Blast result :
Comments
ISTco4 is 92% aa similar to ISTco3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References