ISTco4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGFE01000044.1 | ND | Thermobacillus composti | Thermobacillus composti KWC4 |
DNA section
IS Length : 1577 bp
Ends
IR Length : 14/22
IRL : GTTAGAGTAAAATTTGTGTTGGGGTAAAGATTGGAAAAAGCGGGCATAGA
IRR : GTCTGAGTCAAGCCAGTGTGGGCACTTTTTTTGGGGATGATGGATCACGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAACTCCT | TACAAACAAC | 0 |
DNA sequence
GTTAGAGTAAAATTTGTGTTGGGGTAAAGATTGGAAAAAGCGGGCATAGAAAGAGAGCCTCTCCTTTGGTAGAGTAGAATTTGGCAAAAAACACACACTC
AAAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAGGGTCTGTTCACCGCC
GCGATGAGAACCGCGCTGGAGAAGTTGGATGAAATCATTCTGGAGCAACGGGATCGCGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCATGAACA
CCGTGTTTGGCAACATCCGCTTCAAGCGAAGGTTGTACATGGATCGCCAAACCGGCAAATACGTGTACCTGCTCGACCAGCACTTGCGATTTGAAGGGCG
AGGGAAAGTCAGTCCGCATCTGCTGGAAACGGCCATTGCCTTTGCGGCAGAGGGGCCGTCGTACCGGGACAGCGCCAGACGGCTTGAGCAACTGTTGGGC
TATCCGGTACTCAGCCACGAGGCCATACGGGAGAAGCTGATTGAGCAAGCGGAGAAGCCGGTGAAGGCTGTGGAAAAGCGCAAGGCCAGGGTGCTGTTCG
TGGAAGTGGATGGCCTGTACACGAAACTGCAGCGGCGGAAGCGGCACGGGATGGAGCATGCGATCGCCGTGGTGCATGAGGGATGGGAGCAGGTCGGCAA
GCGTGTGCGGCTTACGAACAAGCAGCATTATCTGCATCGGAGCGAGGGCGACTTTTGGGAAGGGTTTGGCGACTTTCTGACCGAACAGTACGCGATCGAC
GAGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCCAGTTGGATCGGGGAATGCGAATCGTATTTTCACAAGTGCATCTACATGCTGGATCGGTTTCATG
TGGCACGCGATCTGAAGCGGTTTGTGGGACACCTGCCGAAGATATGGAAAGACGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGC
CGTGGAGAGCGTAGCGATCGAGGAGATTGCGCCTGACAAACGGGATGAATGGACCGCATACAAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGAT
TACCGGAAGACACTGGAAGCAAACGGCATCGACACGACTGGCATGAGGCCAATGGGGAGTGCGGAAGCCCAGATGCGGGTGTTGGCCAAACGGACGAAGC
GCGGAGGATATAGCTGGAGTGAACGAGGCTCCCGGGCGATGCTTACGACCGTCATGCGAAGCAAACAGGCCGGATGGCTGGAAGAAGCCGACGAGCACAA
AGTCGAGACACCAGAGCGGGTGTTCAGTGTACGGAAGATCTTGAAAGACGCCATACGACCGGCAAAGGGATGCGTTGACGGGATGATCCGGCTGCTCCGA
AGCCAATGGCAAAGCCGCCCGACCGGACTGGCATTAAAAGGTCTCAAAGGATACTGATACCAGATATTTAAAGCGGTTGCCGAGGGAAGAAAAAATGAAA
CCGCTAACAAGGGATTGGCTCTTTTTCGCGTGATCCATCATCCCCAAAAAAAGTGCCCACACTGGCTTGACTCAGAC
AAAGGAGGAGGCTCCTATGCAGCACTTTACCACAGCCATTCCTGCAATGAAAGAGCTTGAAGAGTGGATGTTCAGAAAGATGCAGGGTCTGTTCACCGCC
GCGATGAGAACCGCGCTGGAGAAGTTGGATGAAATCATTCTGGAGCAACGGGATCGCGAGCGGTATCGCGTCAAGGCTGAACGGGAGACCAGCATGAACA
CCGTGTTTGGCAACATCCGCTTCAAGCGAAGGTTGTACATGGATCGCCAAACCGGCAAATACGTGTACCTGCTCGACCAGCACTTGCGATTTGAAGGGCG
AGGGAAAGTCAGTCCGCATCTGCTGGAAACGGCCATTGCCTTTGCGGCAGAGGGGCCGTCGTACCGGGACAGCGCCAGACGGCTTGAGCAACTGTTGGGC
TATCCGGTACTCAGCCACGAGGCCATACGGGAGAAGCTGATTGAGCAAGCGGAGAAGCCGGTGAAGGCTGTGGAAAAGCGCAAGGCCAGGGTGCTGTTCG
TGGAAGTGGATGGCCTGTACACGAAACTGCAGCGGCGGAAGCGGCACGGGATGGAGCATGCGATCGCCGTGGTGCATGAGGGATGGGAGCAGGTCGGCAA
GCGTGTGCGGCTTACGAACAAGCAGCATTATCTGCATCGGAGCGAGGGCGACTTTTGGGAAGGGTTTGGCGACTTTCTGACCGAACAGTACGCGATCGAC
GAGGACACCTGGCTGGTGGTGGGCGGAGACGGAGCCAGTTGGATCGGGGAATGCGAATCGTATTTTCACAAGTGCATCTACATGCTGGATCGGTTTCATG
TGGCACGCGATCTGAAGCGGTTTGTGGGACACCTGCCGAAGATATGGAAAGACGCAAGACAGGCGTTGGCCAGGCAGGAGCCGGCGGCCTTGATGGCGGC
CGTGGAGAGCGTAGCGATCGAGGAGATTGCGCCTGACAAACGGGATGAATGGACCGCATACAAGTCGTTCTTGAGGCGGCACCGCAAGCATCTGGAGGAT
TACCGGAAGACACTGGAAGCAAACGGCATCGACACGACTGGCATGAGGCCAATGGGGAGTGCGGAAGCCCAGATGCGGGTGTTGGCCAAACGGACGAAGC
GCGGAGGATATAGCTGGAGTGAACGAGGCTCCCGGGCGATGCTTACGACCGTCATGCGAAGCAAACAGGCCGGATGGCTGGAAGAAGCCGACGAGCACAA
AGTCGAGACACCAGAGCGGGTGTTCAGTGTACGGAAGATCTTGAAAGACGCCATACGACCGGCAAAGGGATGCGTTGACGGGATGATCCGGCTGCTCCGA
AGCCAATGGCAAAGCCGCCCGACCGGACTGGCATTAAAAGGTCTCAAAGGATACTGATACCAGATATTTAAAGCGGTTGCCGAGGGAAGAAAAAATGAAA
CCGCTAACAAGGGATTGGCTCTTTTTCGCGTGATCCATCATCCCCAAAAAAAGTGCCCACACTGGCTTGACTCAGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 446 aa | 117 | 1454 | + | No |
Chemistry : DDE
ORF sequence :
MQHFTTAIPAMKELEEWMFRKMQGLFTAAMRTALEKLDEIILEQRDRERYRVKAERETSMNTVFGNIRFKRRLYMDRQTGKYVYLLDQHLRFEGRGKVSP
HLLETAIAFAAEGPSYRDSARRLEQLLGYPVLSHEAIREKLIEQAEKPVKAVEKRKARVLFVEVDGLYTKLQRRKRHGMEHAIAVVHEGWEQVGKRVRLT
NKQHYLHRSEGDFWEGFGDFLTEQYAIDEDTWLVVGGDGASWIGECESYFHKCIYMLDRFHVARDLKRFVGHLPKIWKDARQALARQEPAALMAAVESVA
IEEIAPDKRDEWTAYKSFLRRHRKHLEDYRKTLEANGIDTTGMRPMGSAEAQMRVLAKRTKRGGYSWSERGSRAMLTTVMRSKQAGWLEEADEHKVETPE
RVFSVRKILKDAIRPAKGCVDGMIRLLRSQWQSRPTGLALKGLKGY
HLLETAIAFAAEGPSYRDSARRLEQLLGYPVLSHEAIREKLIEQAEKPVKAVEKRKARVLFVEVDGLYTKLQRRKRHGMEHAIAVVHEGWEQVGKRVRLT
NKQHYLHRSEGDFWEGFGDFLTEQYAIDEDTWLVVGGDGASWIGECESYFHKCIYMLDRFHVARDLKRFVGHLPKIWKDARQALARQEPAALMAAVESVA
IEEIAPDKRDEWTAYKSFLRRHRKHLEDYRKTLEANGIDTTGMRPMGSAEAQMRVLAKRTKRGGYSWSERGSRAMLTTVMRSKQAGWLEEADEHKVETPE
RVFSVRKILKDAIRPAKGCVDGMIRLLRSQWQSRPTGLALKGLKGY
Blast result :
Comments
ISTco4 is 92% aa similar to ISTco3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References