ISGsp5
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013411 | ND | Geobacillus sp. | Geobacillus sp. C56-T3 Geobacillus sp. Y412MC61 Geobacillus sp. Y412MC52 |
DNA section
IS Length : 1706 bp
Ends
IR Length : 20/29
IRL : GTGTGAGTAAAATATTTGTGGGGGGCATTCCGGAATGATTCCCCGACGAG
IRR : GAGTCAGTCAAGACTTTGTGGAGAACATTTTTTCGGTTCACTACGGGCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACAGCGAGA | CAGGTTGGT | TGGGTCATTT | 9 |
ACCGCCGTTT | CTAAGGCTTA | TTGCCTGTTG | 10 |
DNA sequence
GTGTGAGTAAAATATTTGTGGGGGGCATTCCGGAATGATTCCCCGACGAGGGTTGCGAACTTTTGTTCGCGACGCTCGTCGGGGCCACCAAGCGAAGCGC
GGTAGAACAAGCAAATGTCATGCAAAAAGGACTCTCTCCCTGCTATGATGGTGATTGGCAAACCAACCGAAAACAGGAGGGAGAGAGTCCATGAAACATC
TTACCACAGAATGGCCTTTATTAAAAGAGCTGGAGGAGCAATTAGTCAGAACTCTTCAAAAGGTGTTCGCTGTCTTGTTGGCGGCCCTTTTGGAGGAGAT
CGATCAACAACTGGCGGAAGCGCGGGACAAGCGCCGGCATCAGCTGAAAGACAAACGGCCGACTACGATCCAAACGCTGTTTGGGGAAGTGACGTTCCGA
CGGAACTACTACTATGACCGGCAAACGGGGAACTATACCTTCTTGCTGGATGCCGAACTGGGCTTTGATGGAGCCCAATCGATCAGCCCTTGCCTCGAGG
AAACGGCGGTCGAGTTGGCCGTCGAGTGCTCTTCCTACCGCAAAGCAGCTCGCACACTCGAGTCAATCGTGGGGTATGCGGTTCTCAGCCACGAGGCGAT
TCGCCAGTTGGTGCTCGAGGCCCCTGTCTCGCTGCACCGCCCTGTTTCCAAACGGCATGGCCGAGTGCTGTTTGTGGAGGCCGATGGACTGTTCATTTCC
CGCCAGGGGAAAGGAAAACGGGCGAAAGAAGAGAAAATCCTGGCGGTTCACGAGGGATGGAGACGAAACGGGTCGCAGCTCAAGCTGGTGAACCGACGCC
ACTACCTCCATGAAGGGACAGGGGACGTGTGGGAACGGTTCGAGGAGTGGCTGATGAAGGAATATGCCTATGATCCGTGCCGGGACTTGTTGATCATCAA
CGGCGACGCGGCGTCGTGGATCACGGCCTGCCGGGAGTATTTTGGGAAGCGGGCGTGCTTTCAGCTGGATCGATTTCATGTGGCGCGGGAGCTGCGTCAG
TGTCTGTCCGGCCATCCGCGTTGGCGGGAAGTGCGGAAGAAGCTGGCGAAACAAGACGAAGAAGGGCTTCTCGTGGAGCTGAACAGCGCCATCGGCACGT
TGGAGGACGAAGCGAAAGAGAAGCAGATGGCTGCCATGATCCGCCGGATCGAGTCGATGCCGGGATGCATCCGGGACTACCGGGAGTGGCTGTCGGAGCA
AGGGGTGGAGACGACCGGCATGCGTCCGATGGGCCACGCCGAGAGCGTGATGAGCCGATTTGCGCATCGGGTGAAATCCCGCCGCAGCTGGAAAGACCAA
GGGCTTCGAGCGTTTTTAAAAGCGATGGTGGCCCGAATCGACGGGATCCGGTGGAGAAAGGGGCCGTTGGAGGCAGAAGAGCCCCAGTCGGCCGTCTCGG
CCTCAACAAAGTCCAAGCGGATCGAACAGGCCAAACGGAAGGCAGGACGGTTGTGGGCGGATGTGGTGCGTCAGAATCTACCGTGTCTGCAACAGTCATC
TGGGACGCCGATCCATCAAGCGTTGTCGGCGCTCCGGGATGGTGGTTGGGTGTAAAAAAATGGAATATCGTATCATCGCCTCAAGATGAGGGATGAGAGT
CCGAAAGCGCTTACGATATTAATTCCTGAAAATGGTTCGCTAACTAGTGATTGACAACGCCCGTAGTGAACCGAAAAAATGTTCTCCACAAAGTCTTGAC
TGACTC
GGTAGAACAAGCAAATGTCATGCAAAAAGGACTCTCTCCCTGCTATGATGGTGATTGGCAAACCAACCGAAAACAGGAGGGAGAGAGTCCATGAAACATC
TTACCACAGAATGGCCTTTATTAAAAGAGCTGGAGGAGCAATTAGTCAGAACTCTTCAAAAGGTGTTCGCTGTCTTGTTGGCGGCCCTTTTGGAGGAGAT
CGATCAACAACTGGCGGAAGCGCGGGACAAGCGCCGGCATCAGCTGAAAGACAAACGGCCGACTACGATCCAAACGCTGTTTGGGGAAGTGACGTTCCGA
CGGAACTACTACTATGACCGGCAAACGGGGAACTATACCTTCTTGCTGGATGCCGAACTGGGCTTTGATGGAGCCCAATCGATCAGCCCTTGCCTCGAGG
AAACGGCGGTCGAGTTGGCCGTCGAGTGCTCTTCCTACCGCAAAGCAGCTCGCACACTCGAGTCAATCGTGGGGTATGCGGTTCTCAGCCACGAGGCGAT
TCGCCAGTTGGTGCTCGAGGCCCCTGTCTCGCTGCACCGCCCTGTTTCCAAACGGCATGGCCGAGTGCTGTTTGTGGAGGCCGATGGACTGTTCATTTCC
CGCCAGGGGAAAGGAAAACGGGCGAAAGAAGAGAAAATCCTGGCGGTTCACGAGGGATGGAGACGAAACGGGTCGCAGCTCAAGCTGGTGAACCGACGCC
ACTACCTCCATGAAGGGACAGGGGACGTGTGGGAACGGTTCGAGGAGTGGCTGATGAAGGAATATGCCTATGATCCGTGCCGGGACTTGTTGATCATCAA
CGGCGACGCGGCGTCGTGGATCACGGCCTGCCGGGAGTATTTTGGGAAGCGGGCGTGCTTTCAGCTGGATCGATTTCATGTGGCGCGGGAGCTGCGTCAG
TGTCTGTCCGGCCATCCGCGTTGGCGGGAAGTGCGGAAGAAGCTGGCGAAACAAGACGAAGAAGGGCTTCTCGTGGAGCTGAACAGCGCCATCGGCACGT
TGGAGGACGAAGCGAAAGAGAAGCAGATGGCTGCCATGATCCGCCGGATCGAGTCGATGCCGGGATGCATCCGGGACTACCGGGAGTGGCTGTCGGAGCA
AGGGGTGGAGACGACCGGCATGCGTCCGATGGGCCACGCCGAGAGCGTGATGAGCCGATTTGCGCATCGGGTGAAATCCCGCCGCAGCTGGAAAGACCAA
GGGCTTCGAGCGTTTTTAAAAGCGATGGTGGCCCGAATCGACGGGATCCGGTGGAGAAAGGGGCCGTTGGAGGCAGAAGAGCCCCAGTCGGCCGTCTCGG
CCTCAACAAAGTCCAAGCGGATCGAACAGGCCAAACGGAAGGCAGGACGGTTGTGGGCGGATGTGGTGCGTCAGAATCTACCGTGTCTGCAACAGTCATC
TGGGACGCCGATCCATCAAGCGTTGTCGGCGCTCCGGGATGGTGGTTGGGTGTAAAAAAATGGAATATCGTATCATCGCCTCAAGATGAGGGATGAGAGT
CCGAAAGCGCTTACGATATTAATTCCTGAAAATGGTTCGCTAACTAGTGATTGACAACGCCCGTAGTGAACCGAAAAAATGTTCTCCACAAAGTCTTGAC
TGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1362 bp | 454 aa | 191 | 1552 | + | No |
Chemistry : DDE
ORF sequence :
MKHLTTEWPLLKELEEQLVRTLQKVFAVLLAALLEEIDQQLAEARDKRRHQLKDKRPTTIQTLFGEVTFRRNYYYDRQTGNYTFLLDAELGFDGAQSISP
CLEETAVELAVECSSYRKAARTLESIVGYAVLSHEAIRQLVLEAPVSLHRPVSKRHGRVLFVEADGLFISRQGKGKRAKEEKILAVHEGWRRNGSQLKLV
NRRHYLHEGTGDVWERFEEWLMKEYAYDPCRDLLIINGDAASWITACREYFGKRACFQLDRFHVARELRQCLSGHPRWREVRKKLAKQDEEGLLVELNSA
IGTLEDEAKEKQMAAMIRRIESMPGCIRDYREWLSEQGVETTGMRPMGHAESVMSRFAHRVKSRRSWKDQGLRAFLKAMVARIDGIRWRKGPLEAEEPQS
AVSASTKSKRIEQAKRKAGRLWADVVRQNLPCLQQSSGTPIHQALSALRDGGWV
CLEETAVELAVECSSYRKAARTLESIVGYAVLSHEAIRQLVLEAPVSLHRPVSKRHGRVLFVEADGLFISRQGKGKRAKEEKILAVHEGWRRNGSQLKLV
NRRHYLHEGTGDVWERFEEWLMKEYAYDPCRDLLIINGDAASWITACREYFGKRACFQLDRFHVARELRQCLSGHPRWREVRKKLAKQDEEGLLVELNSA
IGTLEDEAKEKQMAAMIRRIESMPGCIRDYREWLSEQGVETTGMRPMGHAESVMSRFAHRVKSRRSWKDQGLRAFLKAMVARIDGIRWRKGPLEAEEPQS
AVSASTKSKRIEQAKRKAGRLWADVVRQNLPCLQQSSGTPIHQALSALRDGGWV
Blast result :
Comments
ISGsp5 is 96% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References