ISGsp5

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013411 ND Geobacillus sp.
Geobacillus sp. C56-T3
Geobacillus sp. Y412MC61
Geobacillus sp. Y412MC52
DNA section
IS Length : 1706 bp

Ends


IR Length : 20/29

IRL : GTGTGAGTAAAATATTTGTGGGGGGCATTCCGGAATGATTCCCCGACGAG
IRR : GAGTCAGTCAAGACTTTGTGGAGAACATTTTTTCGGTTCACTACGGGCGT

Insertion site


Left flankDirect repeatRight flankDR Length
TACAGCGAGACAGGTTGGTTGGGTCATTT9
ACCGCCGTTTCTAAGGCTTATTGCCTGTTG10

DNA sequence

GTGTGAGTAAAATATTTGTGGGGGGCATTCCGGAATGATTCCCCGACGAGGGTTGCGAACTTTTGTTCGCGACGCTCGTCGGGGCCACCAAGCGAAGCGC
GGTAGAACAAGCAAATGTCATGCAAAAAGGACTCTCTCCCTGCTATGATGGTGATTGGCAAACCAACCGAAAACAGGAGGGAGAGAGTCCATGAAACATC
TTACCACAGAATGGCCTTTATTAAAAGAGCTGGAGGAGCAATTAGTCAGAACTCTTCAAAAGGTGTTCGCTGTCTTGTTGGCGGCCCTTTTGGAGGAGAT
CGATCAACAACTGGCGGAAGCGCGGGACAAGCGCCGGCATCAGCTGAAAGACAAACGGCCGACTACGATCCAAACGCTGTTTGGGGAAGTGACGTTCCGA
CGGAACTACTACTATGACCGGCAAACGGGGAACTATACCTTCTTGCTGGATGCCGAACTGGGCTTTGATGGAGCCCAATCGATCAGCCCTTGCCTCGAGG
AAACGGCGGTCGAGTTGGCCGTCGAGTGCTCTTCCTACCGCAAAGCAGCTCGCACACTCGAGTCAATCGTGGGGTATGCGGTTCTCAGCCACGAGGCGAT
TCGCCAGTTGGTGCTCGAGGCCCCTGTCTCGCTGCACCGCCCTGTTTCCAAACGGCATGGCCGAGTGCTGTTTGTGGAGGCCGATGGACTGTTCATTTCC
CGCCAGGGGAAAGGAAAACGGGCGAAAGAAGAGAAAATCCTGGCGGTTCACGAGGGATGGAGACGAAACGGGTCGCAGCTCAAGCTGGTGAACCGACGCC
ACTACCTCCATGAAGGGACAGGGGACGTGTGGGAACGGTTCGAGGAGTGGCTGATGAAGGAATATGCCTATGATCCGTGCCGGGACTTGTTGATCATCAA
CGGCGACGCGGCGTCGTGGATCACGGCCTGCCGGGAGTATTTTGGGAAGCGGGCGTGCTTTCAGCTGGATCGATTTCATGTGGCGCGGGAGCTGCGTCAG
TGTCTGTCCGGCCATCCGCGTTGGCGGGAAGTGCGGAAGAAGCTGGCGAAACAAGACGAAGAAGGGCTTCTCGTGGAGCTGAACAGCGCCATCGGCACGT
TGGAGGACGAAGCGAAAGAGAAGCAGATGGCTGCCATGATCCGCCGGATCGAGTCGATGCCGGGATGCATCCGGGACTACCGGGAGTGGCTGTCGGAGCA
AGGGGTGGAGACGACCGGCATGCGTCCGATGGGCCACGCCGAGAGCGTGATGAGCCGATTTGCGCATCGGGTGAAATCCCGCCGCAGCTGGAAAGACCAA
GGGCTTCGAGCGTTTTTAAAAGCGATGGTGGCCCGAATCGACGGGATCCGGTGGAGAAAGGGGCCGTTGGAGGCAGAAGAGCCCCAGTCGGCCGTCTCGG
CCTCAACAAAGTCCAAGCGGATCGAACAGGCCAAACGGAAGGCAGGACGGTTGTGGGCGGATGTGGTGCGTCAGAATCTACCGTGTCTGCAACAGTCATC
TGGGACGCCGATCCATCAAGCGTTGTCGGCGCTCCGGGATGGTGGTTGGGTGTAAAAAAATGGAATATCGTATCATCGCCTCAAGATGAGGGATGAGAGT
CCGAAAGCGCTTACGATATTAATTCCTGAAAATGGTTCGCTAACTAGTGATTGACAACGCCCGTAGTGAACCGAAAAAATGTTCTCCACAAAGTCTTGAC
TGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1362 bp454 aa1911552+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKHLTTEWPLLKELEEQLVRTLQKVFAVLLAALLEEIDQQLAEARDKRRHQLKDKRPTTIQTLFGEVTFRRNYYYDRQTGNYTFLLDAELGFDGAQSISP
CLEETAVELAVECSSYRKAARTLESIVGYAVLSHEAIRQLVLEAPVSLHRPVSKRHGRVLFVEADGLFISRQGKGKRAKEEKILAVHEGWRRNGSQLKLV
NRRHYLHEGTGDVWERFEEWLMKEYAYDPCRDLLIINGDAASWITACREYFGKRACFQLDRFHVARELRQCLSGHPRWREVRKKLAKQDEEGLLVELNSA
IGTLEDEAKEKQMAAMIRRIESMPGCIRDYREWLSEQGVETTGMRPMGHAESVMSRFAHRVKSRRSWKDQGLRAFLKAMVARIDGIRWRKGPLEAEEPQS
AVSASTKSKRIEQAKRKAGRLWADVVRQNLPCLQQSSGTPIHQALSALRDGGWV

 

Blast result :
Comments
ISGsp5 is 96% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References