ISTco2

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003255 ND Thermobacillus composti
Thermobacillus composti KWC4
DNA section
IS Length : 1593 bp

Ends


IR Length : 15/22

IRL : GTTAGTGTAAAATCTTCGTGGGTGTAGGAATTGGAAAAAGCGGACATAGA
IRR : GTCAGTGTCAAGCTAGCGTGGGCAGTCATTTAAGATGCTTGGAACGCGAA

Insertion site


Left flankDirect repeatRight flankDR Length
AACAACAACACCTCGAAAAAAAACACTTG9
CCTTGGCGTGTTTGAAGGCACCGGCGTTG9
GCCAAGGCTGCCGGGCTGAATGAAATATG9
TTGATTCAAGTATAATGGGGGTTCCTTTG9
CAACAATAAAATAATTTGCTGATTAAATT9
TTTCCTGTCAAAACGGTTCCACTTTCTTG9
GTTTCGCCGGACCGGTCCCTGTACATTTG9
CCTTCGGAGGGCCGAATTACGTTTAATTG9
CCATGCTGTATCGCCTCAAATTCTGCTTT9

DNA sequence

GTTAGTGTAAAATCTTCGTGGGTGTAGGAATTGGAAAAAGCGGACATAGAAAAAGAGCTTCTCCCTTGGTAAAGTGATGTTTGTCCACAACACACCAAGA
AGGAGGAAGCTCCTGTGAGCAACATTACCACAACAATGCCGACAATGAAAGAGATTGAGCAATGGATATTTCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCCAGCCAAGGACCGTCGTACCGGGACAGCGCTAAGCGGCTGGAGCAGCTCCTGGGATA
CAATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATTGAGCGTGCGGAACAGCCGATGTCTGAGGTGAAGCGACGCCCAGCGCGAGTATTGTTCGTG
GAAGTGGATGGGCTATACACGAAGCTGCAGCGGAGCAAGAAGCGTGGGATGGAGAACGCAATCGCTGTCGTACACGAAGGCTGGGAGAAGAGCGGCAAGC
GAGTGCGGCTGAAGAATAAACAGCATTACCTGCATACGAGCGGCGGCAACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGGGTGGATCGGGGAATGTACATCCTACTTTCACCAATGCCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGTTTTGTCGGACATTTACCGAAGGTGTGGGAGACCGTGAGACGGTCGCTGGCCAAACAGGACGCAGCCGCGCTTATAGCGGCCT
TAGAAAGCGTAGCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGCAGTATAAAAGCTATCTGAAGCGGCACGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGTATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGCATATTCGCCAAGCGGACGAAGCGT
GGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGCGGACAATGATGAGGATTAAAGAAGCCGGCATGGTTGTAAGAACGGTTGAAGGACATG
CGAGTATGCAAGCAACGTCACAACAGCCAATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCAGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCTCTTCGCGGATAATGGCAAAAAAATTCTGACAAATCACTTTTATTTGATGAA
AGAACGAAGCAAAGCGCTTACAAGGAAGAGGTTTCCTTTGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1151461+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNITTTMPTMKEIEQWIFRKMQEEFARAMKQVLEALDQQILEQRDRERYRVKDERETSVNTVFGNVRFKRRLYCDRRSGKHVYLLDQLLQFEGRGKVSP
HLEETAIAFASQGPSYRDSAKRLEQLLGYNVLSHQAIREKLIERAEQPMSEVKRRPARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKSGKRVRLK
NKQHYLHTSGGNFWEGFGDFLVERYEIDENTWLVVNGDGAGWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPKVWETVRRSLAKQDAAALIAALESVA
EQEIAEENRKDWKQYKSYLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRGGYSWSERGVRAMLRTMMRIKEAGMVVRTVEGHASMQA
TSQQPINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG

 

Blast result :
Comments
ISTco2 is 96% aa similar to ISTco1.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References