ISTco2
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003255 | ND | Thermobacillus composti | Thermobacillus composti KWC4 |
DNA section
IS Length : 1593 bp
Ends
IR Length : 15/22
IRL : GTTAGTGTAAAATCTTCGTGGGTGTAGGAATTGGAAAAAGCGGACATAGA
IRR : GTCAGTGTCAAGCTAGCGTGGGCAGTCATTTAAGATGCTTGGAACGCGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACAACAACA | CCTCGAAAA | AAAACACTTG | 9 |
CCTTGGCGTG | TTTGAAGGC | ACCGGCGTTG | 9 |
GCCAAGGCTG | CCGGGCTGA | ATGAAATATG | 9 |
TTGATTCAAG | TATAATGGG | GGTTCCTTTG | 9 |
CAACAATAAA | ATAATTTGC | TGATTAAATT | 9 |
TTTCCTGTCA | AAACGGTTC | CACTTTCTTG | 9 |
GTTTCGCCGG | ACCGGTCCC | TGTACATTTG | 9 |
CCTTCGGAGG | GCCGAATTA | CGTTTAATTG | 9 |
CCATGCTGTA | TCGCCTCAA | ATTCTGCTTT | 9 |
DNA sequence
GTTAGTGTAAAATCTTCGTGGGTGTAGGAATTGGAAAAAGCGGACATAGAAAAAGAGCTTCTCCCTTGGTAAAGTGATGTTTGTCCACAACACACCAAGA
AGGAGGAAGCTCCTGTGAGCAACATTACCACAACAATGCCGACAATGAAAGAGATTGAGCAATGGATATTTCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCCAGCCAAGGACCGTCGTACCGGGACAGCGCTAAGCGGCTGGAGCAGCTCCTGGGATA
CAATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATTGAGCGTGCGGAACAGCCGATGTCTGAGGTGAAGCGACGCCCAGCGCGAGTATTGTTCGTG
GAAGTGGATGGGCTATACACGAAGCTGCAGCGGAGCAAGAAGCGTGGGATGGAGAACGCAATCGCTGTCGTACACGAAGGCTGGGAGAAGAGCGGCAAGC
GAGTGCGGCTGAAGAATAAACAGCATTACCTGCATACGAGCGGCGGCAACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGGGTGGATCGGGGAATGTACATCCTACTTTCACCAATGCCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGTTTTGTCGGACATTTACCGAAGGTGTGGGAGACCGTGAGACGGTCGCTGGCCAAACAGGACGCAGCCGCGCTTATAGCGGCCT
TAGAAAGCGTAGCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGCAGTATAAAAGCTATCTGAAGCGGCACGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGTATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGCATATTCGCCAAGCGGACGAAGCGT
GGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGCGGACAATGATGAGGATTAAAGAAGCCGGCATGGTTGTAAGAACGGTTGAAGGACATG
CGAGTATGCAAGCAACGTCACAACAGCCAATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCAGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCTCTTCGCGGATAATGGCAAAAAAATTCTGACAAATCACTTTTATTTGATGAA
AGAACGAAGCAAAGCGCTTACAAGGAAGAGGTTTCCTTTGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
AGGAGGAAGCTCCTGTGAGCAACATTACCACAACAATGCCGACAATGAAAGAGATTGAGCAATGGATATTTCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCCAGCCAAGGACCGTCGTACCGGGACAGCGCTAAGCGGCTGGAGCAGCTCCTGGGATA
CAATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATTGAGCGTGCGGAACAGCCGATGTCTGAGGTGAAGCGACGCCCAGCGCGAGTATTGTTCGTG
GAAGTGGATGGGCTATACACGAAGCTGCAGCGGAGCAAGAAGCGTGGGATGGAGAACGCAATCGCTGTCGTACACGAAGGCTGGGAGAAGAGCGGCAAGC
GAGTGCGGCTGAAGAATAAACAGCATTACCTGCATACGAGCGGCGGCAACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGGGTGGATCGGGGAATGTACATCCTACTTTCACCAATGCCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGTTTTGTCGGACATTTACCGAAGGTGTGGGAGACCGTGAGACGGTCGCTGGCCAAACAGGACGCAGCCGCGCTTATAGCGGCCT
TAGAAAGCGTAGCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGCAGTATAAAAGCTATCTGAAGCGGCACGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGTATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGCATATTCGCCAAGCGGACGAAGCGT
GGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGCGGACAATGATGAGGATTAAAGAAGCCGGCATGGTTGTAAGAACGGTTGAAGGACATG
CGAGTATGCAAGCAACGTCACAACAGCCAATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCAGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCTCTTCGCGGATAATGGCAAAAAAATTCTGACAAATCACTTTTATTTGATGAA
AGAACGAAGCAAAGCGCTTACAAGGAAGAGGTTTCCTTTGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 115 | 1461 | + | No |
Chemistry : DDE
ORF sequence :
MSNITTTMPTMKEIEQWIFRKMQEEFARAMKQVLEALDQQILEQRDRERYRVKDERETSVNTVFGNVRFKRRLYCDRRSGKHVYLLDQLLQFEGRGKVSP
HLEETAIAFASQGPSYRDSAKRLEQLLGYNVLSHQAIREKLIERAEQPMSEVKRRPARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKSGKRVRLK
NKQHYLHTSGGNFWEGFGDFLVERYEIDENTWLVVNGDGAGWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPKVWETVRRSLAKQDAAALIAALESVA
EQEIAEENRKDWKQYKSYLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRGGYSWSERGVRAMLRTMMRIKEAGMVVRTVEGHASMQA
TSQQPINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG
HLEETAIAFASQGPSYRDSAKRLEQLLGYNVLSHQAIREKLIERAEQPMSEVKRRPARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKSGKRVRLK
NKQHYLHTSGGNFWEGFGDFLVERYEIDENTWLVVNGDGAGWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPKVWETVRRSLAKQDAAALIAALESVA
EQEIAEENRKDWKQYKSYLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRGGYSWSERGVRAMLRTMMRIKEAGMVVRTVEGHASMQA
TSQQPINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG
Blast result :
Comments
ISTco2 is 96% aa similar to ISTco1.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References