ISTco1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGFE01000053.1 | ND | Thermobacillus composti | Thermobacillus composti KWC4 |
DNA section
IS Length : 1591 bp
Ends
IR Length : 14/22
IRL : GTTAGTGTAAAATCTCTGTGGGTGTAAGAATTGGAAAAAGCGGATATAGA
IRR : GTCAGTGTCAAGCTAGCGTGGGCAGTCATTTAAGATGCTTGGAACGCGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATTTTTCC | TTAGGTAAA | ATTTTTGTTG | 9 |
DNA sequence
GTTAGTGTAAAATCTCTGTGGGTGTAAGAATTGGAAAAAGCGGATATAGAAAAAGAGCTTCTCCCTTGGTAAAGTGATGTTTGCGCACAACACACCAAGA
AGGAGGAAGCTCCTGTGAGCCACTTTACCACAACAATGCCGACGATGAAAGAGATTGAGCAATGGATTTTCCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCAAGCCAAGGACCGTCGTACCGGGACAGCGCAAAGCGGCTGGAGCAGCTTTTGGGCTA
CCATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATGGAGCGTGCGCAACAGCCGATGCCAGCGGTGAAACGGCGCGCTGCCCGCGTGCTGTTCGTG
GAAGTGGATGGGCTGTACACGAAGCTGCAGCGGAGCAAAAAGCGCGGGATGGAGAACGCAATTGCGGTCGTACACGAAGGCTGGGAGAAGAACGGCAAGC
GGGTACAGCTGAAGAACAAACAGCATTACCTGCATACGAGCGGCGGCGACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGCGTGGATCGGGGAATGTACATCCTACTTTCACCAATGTCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGCTTTGTCGGTCATTTGCCGCAGGTGTGGGAGACCGTGAGACGGTCTTTGGCCAAACAGGATGCAGCCGCGCTTATGGCGGTCC
TGGAAGGCGTGTCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGTCGTATAAAAGATTTCTAAAGCGACATGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGCATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGTATATTCGCCAAGCGGACAAAGCGT
AGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGAGGACGATGATGAGGATTCAAGAAGCGGGCACGGTGGTAAGAGCGGTTGAAGGACAAG
CGAGTAAGCAGGCAACGCCGCAGCAGTCGATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCGGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCACTTCGCGGATAACGGTAAAAAATTCTGACAAATCACTTGTGTTTGATGAAA
GAACGAAGCAAAGCGCTTACAAGGAAGAGGTTCCTTCGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
AGGAGGAAGCTCCTGTGAGCCACTTTACCACAACAATGCCGACGATGAAAGAGATTGAGCAATGGATTTTCCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCAAGCCAAGGACCGTCGTACCGGGACAGCGCAAAGCGGCTGGAGCAGCTTTTGGGCTA
CCATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATGGAGCGTGCGCAACAGCCGATGCCAGCGGTGAAACGGCGCGCTGCCCGCGTGCTGTTCGTG
GAAGTGGATGGGCTGTACACGAAGCTGCAGCGGAGCAAAAAGCGCGGGATGGAGAACGCAATTGCGGTCGTACACGAAGGCTGGGAGAAGAACGGCAAGC
GGGTACAGCTGAAGAACAAACAGCATTACCTGCATACGAGCGGCGGCGACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGCGTGGATCGGGGAATGTACATCCTACTTTCACCAATGTCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGCTTTGTCGGTCATTTGCCGCAGGTGTGGGAGACCGTGAGACGGTCTTTGGCCAAACAGGATGCAGCCGCGCTTATGGCGGTCC
TGGAAGGCGTGTCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGTCGTATAAAAGATTTCTAAAGCGACATGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGCATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGTATATTCGCCAAGCGGACAAAGCGT
AGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGAGGACGATGATGAGGATTCAAGAAGCGGGCACGGTGGTAAGAGCGGTTGAAGGACAAG
CGAGTAAGCAGGCAACGCCGCAGCAGTCGATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCGGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCACTTCGCGGATAACGGTAAAAAATTCTGACAAATCACTTGTGTTTGATGAAA
GAACGAAGCAAAGCGCTTACAAGGAAGAGGTTCCTTCGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 115 | 1461 | + | No |
Chemistry : DDE
ORF sequence :
MSHFTTTMPTMKEIEQWIFRKMQEEFARAMKQVLEALDQQILEQRDRERYRVKDERETSVNTVFGNVRFKRRLYCDRRSGKHVYLLDQLLQFEGRGKVSP
HLEETAIAFASQGPSYRDSAKRLEQLLGYHVLSHQAIREKLMERAQQPMPAVKRRAARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKNGKRVQLK
NKQHYLHTSGGDFWEGFGDFLVERYEIDENTWLVVNGDGAAWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPQVWETVRRSLAKQDAAALMAVLEGVS
EQEIAEENRKDWKSYKRFLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRSGYSWSERGVRAMLRTMMRIQEAGTVVRAVEGQASKQA
TPQQSINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG
HLEETAIAFASQGPSYRDSAKRLEQLLGYHVLSHQAIREKLMERAQQPMPAVKRRAARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKNGKRVQLK
NKQHYLHTSGGDFWEGFGDFLVERYEIDENTWLVVNGDGAAWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPQVWETVRRSLAKQDAAALMAVLEGVS
EQEIAEENRKDWKSYKRFLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRSGYSWSERGVRAMLRTMMRIQEAGTVVRAVEGQASKQA
TPQQSINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG
Blast result :
Comments
ISTco1 is 61% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References