ISTco1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AGFE01000053.1 ND Thermobacillus composti
Thermobacillus composti KWC4
DNA section
IS Length : 1591 bp

Ends


IR Length : 14/22

IRL : GTTAGTGTAAAATCTCTGTGGGTGTAAGAATTGGAAAAAGCGGATATAGA
IRR : GTCAGTGTCAAGCTAGCGTGGGCAGTCATTTAAGATGCTTGGAACGCGAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAATTTTTCCTTAGGTAAAATTTTTGTTG9

DNA sequence

GTTAGTGTAAAATCTCTGTGGGTGTAAGAATTGGAAAAAGCGGATATAGAAAAAGAGCTTCTCCCTTGGTAAAGTGATGTTTGCGCACAACACACCAAGA
AGGAGGAAGCTCCTGTGAGCCACTTTACCACAACAATGCCGACGATGAAAGAGATTGAGCAATGGATTTTCCGGAAAATGCAGGAGGAATTCGCTCGTGC
GATGAAGCAGGTGCTGGAGGCGCTGGATCAGCAGATCTTGGAGCAACGGGACCGAGAGCGTTATCGAGTAAAGGACGAGCGTGAAACAAGCGTCAACACA
GTGTTCGGGAATGTGCGCTTTAAGCGGAGATTGTACTGTGACCGTAGAAGCGGCAAACACGTGTATCTGCTGGATCAGCTGTTGCAATTCGAAGGGCGCG
GGAAAGTCAGTCCGCATTTGGAAGAGACAGCCATCGCATTCGCAAGCCAAGGACCGTCGTACCGGGACAGCGCAAAGCGGCTGGAGCAGCTTTTGGGCTA
CCATGTGCTGAGCCACCAAGCGATCAGGGAAAAACTGATGGAGCGTGCGCAACAGCCGATGCCAGCGGTGAAACGGCGCGCTGCCCGCGTGCTGTTCGTG
GAAGTGGATGGGCTGTACACGAAGCTGCAGCGGAGCAAAAAGCGCGGGATGGAGAACGCAATTGCGGTCGTACACGAAGGCTGGGAGAAGAACGGCAAGC
GGGTACAGCTGAAGAACAAACAGCATTACCTGCATACGAGCGGCGGCGACTTCTGGGAAGGGTTCGGGGACTTTCTGGTGGAGCGTTACGAAATCGACGA
GAACACGTGGCTTGTGGTGAACGGAGACGGCGCGGCGTGGATCGGGGAATGTACATCCTACTTTCACCAATGTCTGTACATGCTGGACCGCTTTCATGTG
GCGCGTGATTTGAAACGCTTTGTCGGTCATTTGCCGCAGGTGTGGGAGACCGTGAGACGGTCTTTGGCCAAACAGGATGCAGCCGCGCTTATGGCGGTCC
TGGAAGGCGTGTCGGAGCAAGAGATAGCGGAAGAGAACCGGAAGGATTGGAAGTCGTATAAAAGATTTCTAAAGCGACATGAGAAGCATTTGGACGACTA
CCGAAAAACACTCCAGGTGAAGGGGATCGACACAAGCGGCATGCGCCCGATGGGAAGCGCGGAATCGCAGATGCGTATATTCGCCAAGCGGACAAAGCGT
AGCGGGTACAGTTGGAGTGAGCGAGGCGTCAGGGCGATGCTGAGGACGATGATGAGGATTCAAGAAGCGGGCACGGTGGTAAGAGCGGTTGAAGGACAAG
CGAGTAAGCAGGCAACGCCGCAGCAGTCGATAAACATGCGGCAATTGCTCAAGAACGTGACGCAACCGGTCAAGGGTTGTATCGCTGGAATGATTCGCAT
GCTGCAAGGACCGAAGCAAAGCAGCACAACGGGTATGGCACTCAAAGCACTTCGCGGATAACGGTAAAAAATTCTGACAAATCACTTGTGTTTGATGAAA
GAACGAAGCAAAGCGCTTACAAGGAAGAGGTTCCTTCGGGGTTCGCGTTCCAAGCATCTTAAATGACTGCCCACGCTAGCTTGACACTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1151461+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHFTTTMPTMKEIEQWIFRKMQEEFARAMKQVLEALDQQILEQRDRERYRVKDERETSVNTVFGNVRFKRRLYCDRRSGKHVYLLDQLLQFEGRGKVSP
HLEETAIAFASQGPSYRDSAKRLEQLLGYHVLSHQAIREKLMERAQQPMPAVKRRAARVLFVEVDGLYTKLQRSKKRGMENAIAVVHEGWEKNGKRVQLK
NKQHYLHTSGGDFWEGFGDFLVERYEIDENTWLVVNGDGAAWIGECTSYFHQCLYMLDRFHVARDLKRFVGHLPQVWETVRRSLAKQDAAALMAVLEGVS
EQEIAEENRKDWKSYKRFLKRHEKHLDDYRKTLQVKGIDTSGMRPMGSAESQMRIFAKRTKRSGYSWSERGVRAMLRTMMRIQEAGTVVRAVEGQASKQA
TPQQSINMRQLLKNVTQPVKGCIAGMIRMLQGPKQSSTTGMALKALRG

 

Blast result :
Comments
ISTco1 is 61% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References