ISGsp4

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012793 ND Geobacillus sp.
Geobacillus sp. WCH70
DNA section
IS Length : 1707 bp

Ends


IR Length : 17/23

IRL : GTGTGAGTAAAATGTTTGTGGGAGAAATTCTTAGAATTCCCCGATGAGGG
IRR : GAGTCAGTCAAGACTTTGTGGGAACTTTTTTGATTCCTGAAAACAGATGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTGTCTCTTATTTCTAATTTTCTATTGC9
GGGAGATGAATCGCCTTAATTATATTTTGC9
TTGCAAAAAAGAACGTAAACA0
GTGGTTTTTATGTCGTTGGGA0
TTAGGTATAGACCAACTCACG0

DNA sequence

GTGTGAGTAAAATGTTTGTGGGAGAAATTCTTAGAATTCCCCGATGAGGGGGTTGGGAACGTAGGTTCGCAATCCCCCTCATCGGGGCCACCAAGCGAAG
CGCGGTAGGATCCCAAGCAGGAAACATGAAAAAAGGACTCTCTCCCTGGTAAGATGATCATTGCCACACCATCAAACAGGAGGAGAGAGTCCCATGAATA
TTCAACAACATCTTACCACAAATTCGTTGACATGGAAAGAGATCGAACTTGATTTGTTTCGAGCCCTGCAAAACGCCTTCGCTGAGCTGTTTACGGCTCT
GTTGGAGGACATCGACCGACAATTGGCGGAAACCCGGGACAAGCGCCGATACCACTTGAAAGACAAACGACGCACCACGATTCAAACCCTGTTTGGCGAA
GTCACCTTTGAGCGGAACTACTATTTAGACCGGGAACAAAACCGTTACACGTTTTTGCTTGATTCCTTTTTAGCGTTTGATGGATCGCAGTCAATCAGCC
CTTGTCTAGAAGAAACGGCGGTGGGATTGGCGGTGGAGTGCTCTTCCTATCGCAAAGCGGCTCGTACGCTTGCCCAGATGGTCGGGTATCCGGTGATGAG
CCATGAGGCGATCCGCCAGTTGGTGCTCGAAGCTGAAGCTCCGCTGCACTGCCCGGTGGACCAGCGATATGGACGGGTGCTGTTTGTGGAGGCCGATGGA
CTGTTTGTTTCTCGCCAAGGGAAGGGAAAACGGGCCAAGGAAGACAAAATCCTGACCGTTCACGAAGGGTGGAAGCGCAACGGCTCACGGATCGAATTTG
TCAATCAGCGCCATTACGTCCATGAGGGCAAGAGGGAGGTGTGGGAAGGCTTCGAGGAATTTTTGATGAACGAATATGCCTATGATCCGTGTCGGGATCT
TCTTGTCATCAACGGGGACGGCGCTCCATGGATTACCGCGTGCCGGGAGTATTTCAAGGGACGGGTCTGCTTCCAATTGGATCGATTCCACGTGGCGCGT
GAGTTGCGCCAATGCCTCTCGGGCCATCCACGGTGGCAGGCGATTCGGCAAAAGCTGGCGAAGCAGGATGAAGAGGGGTTGCTTGTGGAACGGAACAGCG
CCCTCGGCACGCTGGGGGACGAAGCGAAAGAACAACAGCTGGCTGCCTTGATCCACCGGATCGAATCGATGCCGGGATGCATCCGTGATTACCGGGAATG
GCTGAAGGAGCAAGGAGTGGACACAACGGGCATGTATCCGATGGGGAGGGCTGAAAGCGTGATGAGCCAGTTGGCGTATCGGGTGAAATACCGCCGCAGT
TGGACAGACAAGGGACTCAGGGCGTTTTTCAAGGCAATGATTGCCCGGATGGATGGGATTCGTCTTTTCGGACGTCGTTTAGGAGAAGAATCGTCGCAGC
CGGCGGAGGAAACGGCATCCACCAAACAGACGATCGTGAACAAGGCGAAACAACGCGTCCGCCGTCTTCTTCCGGAGGTAACGCGGAATAACGTGCCATA
TTTACAGCAATCGTCCGGGACACCGATCTATCATGCCCTGTCTGAACTCAAGGGATGGTAAAAAAAGGTATACATATCGGTCTGTCATGGCAAGGGATGA
GAGTCCGAAAGCGCTTACGGATGAAATTCAAAAAAATGGTTCGCTGACCTATGACTTACATCTGTTTTCAGGAATCAAAAAAGTTCCCACAAAGTCTTGA
CTGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1368 bp455 aa1941561+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIQQHLTTNSLTWKEIELDLFRALQNAFAELFTALLEDIDRQLAETRDKRRYHLKDKRRTTIQTLFGEVTFERNYYLDREQNRYTFLLDSFLAFDGSQS
ISPCLEETAVGLAVECSSYRKAARTLAQMVGYPVMSHEAIRQLVLEAEAPLHCPVDQRYGRVLFVEADGLFVSRQGKGKRAKEDKILTVHEGWKRNGSRI
EFVNQRHYVHEGKREVWEGFEEFLMNEYAYDPCRDLLVINGDGAPWITACREYFKGRVCFQLDRFHVARELRQCLSGHPRWQAIRQKLAKQDEEGLLVER
NSALGTLGDEAKEQQLAALIHRIESMPGCIRDYREWLKEQGVDTTGMYPMGRAESVMSQLAYRVKYRRSWTDKGLRAFFKAMIARMDGIRLFGRRLGEES
SQPAEETASTKQTIVNKAKQRVRRLLPEVTRNNVPYLQQSSGTPIYHALSELKGW

 

Blast result :
Comments
ISGsp4 is 81% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References