ISGsp4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012793 | ND | Geobacillus sp. | Geobacillus sp. WCH70 |
DNA section
IS Length : 1707 bp
Ends
IR Length : 17/23
IRL : GTGTGAGTAAAATGTTTGTGGGAGAAATTCTTAGAATTCCCCGATGAGGG
IRR : GAGTCAGTCAAGACTTTGTGGGAACTTTTTTGATTCCTGAAAACAGATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTTGTCTCT | TATTTCTAA | TTTTCTATTGC | 9 |
GGGAGATGAA | TCGCCTTAA | TTATATTTTGC | 9 |
TTGCAAAAAA | GAACGTAAACA | 0 | |
GTGGTTTTTA | TGTCGTTGGGA | 0 | |
TTAGGTATAG | ACCAACTCACG | 0 |
DNA sequence
GTGTGAGTAAAATGTTTGTGGGAGAAATTCTTAGAATTCCCCGATGAGGGGGTTGGGAACGTAGGTTCGCAATCCCCCTCATCGGGGCCACCAAGCGAAG
CGCGGTAGGATCCCAAGCAGGAAACATGAAAAAAGGACTCTCTCCCTGGTAAGATGATCATTGCCACACCATCAAACAGGAGGAGAGAGTCCCATGAATA
TTCAACAACATCTTACCACAAATTCGTTGACATGGAAAGAGATCGAACTTGATTTGTTTCGAGCCCTGCAAAACGCCTTCGCTGAGCTGTTTACGGCTCT
GTTGGAGGACATCGACCGACAATTGGCGGAAACCCGGGACAAGCGCCGATACCACTTGAAAGACAAACGACGCACCACGATTCAAACCCTGTTTGGCGAA
GTCACCTTTGAGCGGAACTACTATTTAGACCGGGAACAAAACCGTTACACGTTTTTGCTTGATTCCTTTTTAGCGTTTGATGGATCGCAGTCAATCAGCC
CTTGTCTAGAAGAAACGGCGGTGGGATTGGCGGTGGAGTGCTCTTCCTATCGCAAAGCGGCTCGTACGCTTGCCCAGATGGTCGGGTATCCGGTGATGAG
CCATGAGGCGATCCGCCAGTTGGTGCTCGAAGCTGAAGCTCCGCTGCACTGCCCGGTGGACCAGCGATATGGACGGGTGCTGTTTGTGGAGGCCGATGGA
CTGTTTGTTTCTCGCCAAGGGAAGGGAAAACGGGCCAAGGAAGACAAAATCCTGACCGTTCACGAAGGGTGGAAGCGCAACGGCTCACGGATCGAATTTG
TCAATCAGCGCCATTACGTCCATGAGGGCAAGAGGGAGGTGTGGGAAGGCTTCGAGGAATTTTTGATGAACGAATATGCCTATGATCCGTGTCGGGATCT
TCTTGTCATCAACGGGGACGGCGCTCCATGGATTACCGCGTGCCGGGAGTATTTCAAGGGACGGGTCTGCTTCCAATTGGATCGATTCCACGTGGCGCGT
GAGTTGCGCCAATGCCTCTCGGGCCATCCACGGTGGCAGGCGATTCGGCAAAAGCTGGCGAAGCAGGATGAAGAGGGGTTGCTTGTGGAACGGAACAGCG
CCCTCGGCACGCTGGGGGACGAAGCGAAAGAACAACAGCTGGCTGCCTTGATCCACCGGATCGAATCGATGCCGGGATGCATCCGTGATTACCGGGAATG
GCTGAAGGAGCAAGGAGTGGACACAACGGGCATGTATCCGATGGGGAGGGCTGAAAGCGTGATGAGCCAGTTGGCGTATCGGGTGAAATACCGCCGCAGT
TGGACAGACAAGGGACTCAGGGCGTTTTTCAAGGCAATGATTGCCCGGATGGATGGGATTCGTCTTTTCGGACGTCGTTTAGGAGAAGAATCGTCGCAGC
CGGCGGAGGAAACGGCATCCACCAAACAGACGATCGTGAACAAGGCGAAACAACGCGTCCGCCGTCTTCTTCCGGAGGTAACGCGGAATAACGTGCCATA
TTTACAGCAATCGTCCGGGACACCGATCTATCATGCCCTGTCTGAACTCAAGGGATGGTAAAAAAAGGTATACATATCGGTCTGTCATGGCAAGGGATGA
GAGTCCGAAAGCGCTTACGGATGAAATTCAAAAAAATGGTTCGCTGACCTATGACTTACATCTGTTTTCAGGAATCAAAAAAGTTCCCACAAAGTCTTGA
CTGACTC
CGCGGTAGGATCCCAAGCAGGAAACATGAAAAAAGGACTCTCTCCCTGGTAAGATGATCATTGCCACACCATCAAACAGGAGGAGAGAGTCCCATGAATA
TTCAACAACATCTTACCACAAATTCGTTGACATGGAAAGAGATCGAACTTGATTTGTTTCGAGCCCTGCAAAACGCCTTCGCTGAGCTGTTTACGGCTCT
GTTGGAGGACATCGACCGACAATTGGCGGAAACCCGGGACAAGCGCCGATACCACTTGAAAGACAAACGACGCACCACGATTCAAACCCTGTTTGGCGAA
GTCACCTTTGAGCGGAACTACTATTTAGACCGGGAACAAAACCGTTACACGTTTTTGCTTGATTCCTTTTTAGCGTTTGATGGATCGCAGTCAATCAGCC
CTTGTCTAGAAGAAACGGCGGTGGGATTGGCGGTGGAGTGCTCTTCCTATCGCAAAGCGGCTCGTACGCTTGCCCAGATGGTCGGGTATCCGGTGATGAG
CCATGAGGCGATCCGCCAGTTGGTGCTCGAAGCTGAAGCTCCGCTGCACTGCCCGGTGGACCAGCGATATGGACGGGTGCTGTTTGTGGAGGCCGATGGA
CTGTTTGTTTCTCGCCAAGGGAAGGGAAAACGGGCCAAGGAAGACAAAATCCTGACCGTTCACGAAGGGTGGAAGCGCAACGGCTCACGGATCGAATTTG
TCAATCAGCGCCATTACGTCCATGAGGGCAAGAGGGAGGTGTGGGAAGGCTTCGAGGAATTTTTGATGAACGAATATGCCTATGATCCGTGTCGGGATCT
TCTTGTCATCAACGGGGACGGCGCTCCATGGATTACCGCGTGCCGGGAGTATTTCAAGGGACGGGTCTGCTTCCAATTGGATCGATTCCACGTGGCGCGT
GAGTTGCGCCAATGCCTCTCGGGCCATCCACGGTGGCAGGCGATTCGGCAAAAGCTGGCGAAGCAGGATGAAGAGGGGTTGCTTGTGGAACGGAACAGCG
CCCTCGGCACGCTGGGGGACGAAGCGAAAGAACAACAGCTGGCTGCCTTGATCCACCGGATCGAATCGATGCCGGGATGCATCCGTGATTACCGGGAATG
GCTGAAGGAGCAAGGAGTGGACACAACGGGCATGTATCCGATGGGGAGGGCTGAAAGCGTGATGAGCCAGTTGGCGTATCGGGTGAAATACCGCCGCAGT
TGGACAGACAAGGGACTCAGGGCGTTTTTCAAGGCAATGATTGCCCGGATGGATGGGATTCGTCTTTTCGGACGTCGTTTAGGAGAAGAATCGTCGCAGC
CGGCGGAGGAAACGGCATCCACCAAACAGACGATCGTGAACAAGGCGAAACAACGCGTCCGCCGTCTTCTTCCGGAGGTAACGCGGAATAACGTGCCATA
TTTACAGCAATCGTCCGGGACACCGATCTATCATGCCCTGTCTGAACTCAAGGGATGGTAAAAAAAGGTATACATATCGGTCTGTCATGGCAAGGGATGA
GAGTCCGAAAGCGCTTACGGATGAAATTCAAAAAAATGGTTCGCTGACCTATGACTTACATCTGTTTTCAGGAATCAAAAAAGTTCCCACAAAGTCTTGA
CTGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1368 bp | 455 aa | 194 | 1561 | + | No |
Chemistry : DDE
ORF sequence :
MNIQQHLTTNSLTWKEIELDLFRALQNAFAELFTALLEDIDRQLAETRDKRRYHLKDKRRTTIQTLFGEVTFERNYYLDREQNRYTFLLDSFLAFDGSQS
ISPCLEETAVGLAVECSSYRKAARTLAQMVGYPVMSHEAIRQLVLEAEAPLHCPVDQRYGRVLFVEADGLFVSRQGKGKRAKEDKILTVHEGWKRNGSRI
EFVNQRHYVHEGKREVWEGFEEFLMNEYAYDPCRDLLVINGDGAPWITACREYFKGRVCFQLDRFHVARELRQCLSGHPRWQAIRQKLAKQDEEGLLVER
NSALGTLGDEAKEQQLAALIHRIESMPGCIRDYREWLKEQGVDTTGMYPMGRAESVMSQLAYRVKYRRSWTDKGLRAFFKAMIARMDGIRLFGRRLGEES
SQPAEETASTKQTIVNKAKQRVRRLLPEVTRNNVPYLQQSSGTPIYHALSELKGW
ISPCLEETAVGLAVECSSYRKAARTLAQMVGYPVMSHEAIRQLVLEAEAPLHCPVDQRYGRVLFVEADGLFVSRQGKGKRAKEDKILTVHEGWKRNGSRI
EFVNQRHYVHEGKREVWEGFEEFLMNEYAYDPCRDLLVINGDGAPWITACREYFKGRVCFQLDRFHVARELRQCLSGHPRWQAIRQKLAKQDEEGLLVER
NSALGTLGDEAKEQQLAALIHRIESMPGCIRDYREWLKEQGVDTTGMYPMGRAESVMSQLAYRVKYRRSWTDKGLRAFFKAMIARMDGIRLFGRRLGEES
SQPAEETASTKQTIVNKAKQRVRRLLPEVTRNNVPYLQQSSGTPIYHALSELKGW
Blast result :
Comments
ISGsp4 is 81% aa similar to ISGsp3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References