ISDsu1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADLT01000001.1 ND Dialister succinatiphilus
Dialister succinatiphilus YIT 11850
DNA section
IS Length : 1655 bp

Ends


IR Length : 19/24

IRL : CTTAGTGTAAAATTTTACTCGGTAGGGGAATTTTCCAGAAACAATAAAAG
IRR : GTAAGTGTCAAGTTTTCCTCGGTAATTCATTTGACTGTCGATAATTACTA

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGCCATTTTTCTCTTTCTCCCTGCTTT9

DNA sequence

CTTAGTGTAAAATTTTACTCGGTAGGGGAATTTTCCAGAAACAATAAAAGAGGAAAGCCTCCCCTTGAGTGGAAATGTTATAATTTCCGTGCACAAATAA
AACAAAGAAAGGGCTTTCCTCATGGATATTATAACAAAAACTGGAGAAATTTGGAGTGAAAATGCAATAGGAGCAGTCATTTCTATCATCAAGGAATCTG
ATGATTCTATTGAGTCTGAAAGGAAGTTATCTCATTGGCTCGAAGAAATGAACTGTCAGCTTATAGCTATGGCTCTGGAGCGTATTGACGCGGAGCTGTA
TCAGATTTACAGGTCACAGGGGTGGCGTGTGGCGCGCCGGGACTCCCGGACGATTTACTGTCGCTATGGAGAGCTGACCTATACCCGAAGACTTCTGCAG
AAAGATGGGAAGAGCTTCTATCCCCTGGACCGCAAAATGGGCTTTGAGCCCAGAAAACACTACAGCATGGGAATGATTGAGCGGATTGTCGAGGCTGTCG
CAATTACCACATCTCGAAGTGCCAGCGAACTCCTGCAAAGCCTGGCAGGGATTACCATCTCCCATCAGTCCGTTATCTCACTCAAGAATTATGCCGGTAA
GAAGGCAAAGGCTTACGAAAAAGCATTGGCAGAAGAGGAAAAGGTTGAAAAGCCGACACAGCCGGAAATTATAGCGATTGAAGGAGATGGAATTGTACTC
AAGAACAAGGAGAAAGGCGGCGTTTCGGAAGTGCACCGCCTCCAGGTATATGAGGGAGTCAGGAAAAATGGCAACAGGACAGAACTGGTAGGACTTCGCT
GCTTTGCATCTACCAGCAGGAAAGAACTTTTTGCAATGGTAAGAAGCTATCTGCTTGGGCACTATGACCTGTCTAAGACCACAGTGCTGTCGAATGGGGA
TGGAGGGTCCGGATACCAGTTTCAGGACTTTGAGCGAATGGTAGAAGGCTGCCTGGATCACCAGCACTTCCGCGACTGCTATCATGTGCATGAAAAGATC
CGGAACCGGCTCAGCTTCTGCAACAAGGAACTGGTAGACCACATTATCCGAGAGCTTCACCGGACCGACAATATTATGAAACAGATTCCGGTATGGATGG
ACACTGCCCGGAGCTGCGCCCGAACAGAGGCGGATTTGGAGGAGGTAGACAAGCTGCAGAGCTATCTGGAGAGAAATGCTCCCTATATCCCCAGCCTGAG
TCAGCGCGGCATCCATACAGAGATTCACCTGGGGACTGCAGAAACAAATCACCGGTTCTACAGCTATCGCATGAAGCGGCAGGGACGGAGCTGGTCCAGC
GAGGGAATGGAGTGTATGGTTTGGGTATTAACCGCCCGGAAGAATAAAACACTTACAGCAGCTCTCCTGTACCATGCTAATGGGAAAAGCTACAAAAAGA
TGGATAGAGCCATGCACAAGGCTGCGGTGCAGACAGAGCGTAAAATCGCCCAGAATGTCCGGAGTGAGGCGCAGAAGCGTAAAATGAGAAACTATAGGCC
AGGATGCCTGGAGGGGCGTATAGGCGTTTATGGAGCTTCTTCTTCACCAATGGGGAGACTGGCCAGAGCTATACAGAAATACTGATTAAACCGAAGCCAC
GGAGATAGTAATTATCGACAGTCAAATGAATTACCGAGGAAAACTTGACACTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1464 bp487 aa1221585+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIITKTGEIWSENAIGAVISIIKESDDSIESERKLSHWLEEMNCQLIAMALERIDAELYQIYRSQGWRVARRDSRTIYCRYGELTYTRRLLQKDGKSFY
PLDRKMGFEPRKHYSMGMIERIVEAVAITTSRSASELLQSLAGITISHQSVISLKNYAGKKAKAYEKALAEEEKVEKPTQPEIIAIEGDGIVLKNKEKGG
VSEVHRLQVYEGVRKNGNRTELVGLRCFASTSRKELFAMVRSYLLGHYDLSKTTVLSNGDGGSGYQFQDFERMVEGCLDHQHFRDCYHVHEKIRNRLSFC
NKELVDHIIRELHRTDNIMKQIPVWMDTARSCARTEADLEEVDKLQSYLERNAPYIPSLSQRGIHTEIHLGTAETNHRFYSYRMKRQGRSWSSEGMECMV
WVLTARKNKTLTAALLYHANGKSYKKMDRAMHKAAVQTERKIAQNVRSEAQKRKMRNYRPGCLEGRIGVYGASSSPMGRLARAIQKY

 

Blast result :
Comments
ISDsu1 is 55% aa similar to ISLhe11.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References