ISDsu1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADLT01000001.1 | ND | Dialister succinatiphilus | Dialister succinatiphilus YIT 11850 |
DNA section
IS Length : 1655 bp
Ends
IR Length : 19/24
IRL : CTTAGTGTAAAATTTTACTCGGTAGGGGAATTTTCCAGAAACAATAAAAG
IRR : GTAAGTGTCAAGTTTTCCTCGGTAATTCATTTGACTGTCGATAATTACTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGCCATTT | TTCTCTTTC | TCCCTGCTTT | 9 |
DNA sequence
CTTAGTGTAAAATTTTACTCGGTAGGGGAATTTTCCAGAAACAATAAAAGAGGAAAGCCTCCCCTTGAGTGGAAATGTTATAATTTCCGTGCACAAATAA
AACAAAGAAAGGGCTTTCCTCATGGATATTATAACAAAAACTGGAGAAATTTGGAGTGAAAATGCAATAGGAGCAGTCATTTCTATCATCAAGGAATCTG
ATGATTCTATTGAGTCTGAAAGGAAGTTATCTCATTGGCTCGAAGAAATGAACTGTCAGCTTATAGCTATGGCTCTGGAGCGTATTGACGCGGAGCTGTA
TCAGATTTACAGGTCACAGGGGTGGCGTGTGGCGCGCCGGGACTCCCGGACGATTTACTGTCGCTATGGAGAGCTGACCTATACCCGAAGACTTCTGCAG
AAAGATGGGAAGAGCTTCTATCCCCTGGACCGCAAAATGGGCTTTGAGCCCAGAAAACACTACAGCATGGGAATGATTGAGCGGATTGTCGAGGCTGTCG
CAATTACCACATCTCGAAGTGCCAGCGAACTCCTGCAAAGCCTGGCAGGGATTACCATCTCCCATCAGTCCGTTATCTCACTCAAGAATTATGCCGGTAA
GAAGGCAAAGGCTTACGAAAAAGCATTGGCAGAAGAGGAAAAGGTTGAAAAGCCGACACAGCCGGAAATTATAGCGATTGAAGGAGATGGAATTGTACTC
AAGAACAAGGAGAAAGGCGGCGTTTCGGAAGTGCACCGCCTCCAGGTATATGAGGGAGTCAGGAAAAATGGCAACAGGACAGAACTGGTAGGACTTCGCT
GCTTTGCATCTACCAGCAGGAAAGAACTTTTTGCAATGGTAAGAAGCTATCTGCTTGGGCACTATGACCTGTCTAAGACCACAGTGCTGTCGAATGGGGA
TGGAGGGTCCGGATACCAGTTTCAGGACTTTGAGCGAATGGTAGAAGGCTGCCTGGATCACCAGCACTTCCGCGACTGCTATCATGTGCATGAAAAGATC
CGGAACCGGCTCAGCTTCTGCAACAAGGAACTGGTAGACCACATTATCCGAGAGCTTCACCGGACCGACAATATTATGAAACAGATTCCGGTATGGATGG
ACACTGCCCGGAGCTGCGCCCGAACAGAGGCGGATTTGGAGGAGGTAGACAAGCTGCAGAGCTATCTGGAGAGAAATGCTCCCTATATCCCCAGCCTGAG
TCAGCGCGGCATCCATACAGAGATTCACCTGGGGACTGCAGAAACAAATCACCGGTTCTACAGCTATCGCATGAAGCGGCAGGGACGGAGCTGGTCCAGC
GAGGGAATGGAGTGTATGGTTTGGGTATTAACCGCCCGGAAGAATAAAACACTTACAGCAGCTCTCCTGTACCATGCTAATGGGAAAAGCTACAAAAAGA
TGGATAGAGCCATGCACAAGGCTGCGGTGCAGACAGAGCGTAAAATCGCCCAGAATGTCCGGAGTGAGGCGCAGAAGCGTAAAATGAGAAACTATAGGCC
AGGATGCCTGGAGGGGCGTATAGGCGTTTATGGAGCTTCTTCTTCACCAATGGGGAGACTGGCCAGAGCTATACAGAAATACTGATTAAACCGAAGCCAC
GGAGATAGTAATTATCGACAGTCAAATGAATTACCGAGGAAAACTTGACACTTAC
AACAAAGAAAGGGCTTTCCTCATGGATATTATAACAAAAACTGGAGAAATTTGGAGTGAAAATGCAATAGGAGCAGTCATTTCTATCATCAAGGAATCTG
ATGATTCTATTGAGTCTGAAAGGAAGTTATCTCATTGGCTCGAAGAAATGAACTGTCAGCTTATAGCTATGGCTCTGGAGCGTATTGACGCGGAGCTGTA
TCAGATTTACAGGTCACAGGGGTGGCGTGTGGCGCGCCGGGACTCCCGGACGATTTACTGTCGCTATGGAGAGCTGACCTATACCCGAAGACTTCTGCAG
AAAGATGGGAAGAGCTTCTATCCCCTGGACCGCAAAATGGGCTTTGAGCCCAGAAAACACTACAGCATGGGAATGATTGAGCGGATTGTCGAGGCTGTCG
CAATTACCACATCTCGAAGTGCCAGCGAACTCCTGCAAAGCCTGGCAGGGATTACCATCTCCCATCAGTCCGTTATCTCACTCAAGAATTATGCCGGTAA
GAAGGCAAAGGCTTACGAAAAAGCATTGGCAGAAGAGGAAAAGGTTGAAAAGCCGACACAGCCGGAAATTATAGCGATTGAAGGAGATGGAATTGTACTC
AAGAACAAGGAGAAAGGCGGCGTTTCGGAAGTGCACCGCCTCCAGGTATATGAGGGAGTCAGGAAAAATGGCAACAGGACAGAACTGGTAGGACTTCGCT
GCTTTGCATCTACCAGCAGGAAAGAACTTTTTGCAATGGTAAGAAGCTATCTGCTTGGGCACTATGACCTGTCTAAGACCACAGTGCTGTCGAATGGGGA
TGGAGGGTCCGGATACCAGTTTCAGGACTTTGAGCGAATGGTAGAAGGCTGCCTGGATCACCAGCACTTCCGCGACTGCTATCATGTGCATGAAAAGATC
CGGAACCGGCTCAGCTTCTGCAACAAGGAACTGGTAGACCACATTATCCGAGAGCTTCACCGGACCGACAATATTATGAAACAGATTCCGGTATGGATGG
ACACTGCCCGGAGCTGCGCCCGAACAGAGGCGGATTTGGAGGAGGTAGACAAGCTGCAGAGCTATCTGGAGAGAAATGCTCCCTATATCCCCAGCCTGAG
TCAGCGCGGCATCCATACAGAGATTCACCTGGGGACTGCAGAAACAAATCACCGGTTCTACAGCTATCGCATGAAGCGGCAGGGACGGAGCTGGTCCAGC
GAGGGAATGGAGTGTATGGTTTGGGTATTAACCGCCCGGAAGAATAAAACACTTACAGCAGCTCTCCTGTACCATGCTAATGGGAAAAGCTACAAAAAGA
TGGATAGAGCCATGCACAAGGCTGCGGTGCAGACAGAGCGTAAAATCGCCCAGAATGTCCGGAGTGAGGCGCAGAAGCGTAAAATGAGAAACTATAGGCC
AGGATGCCTGGAGGGGCGTATAGGCGTTTATGGAGCTTCTTCTTCACCAATGGGGAGACTGGCCAGAGCTATACAGAAATACTGATTAAACCGAAGCCAC
GGAGATAGTAATTATCGACAGTCAAATGAATTACCGAGGAAAACTTGACACTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1464 bp | 487 aa | 122 | 1585 | + | No |
Chemistry : DDE
ORF sequence :
MDIITKTGEIWSENAIGAVISIIKESDDSIESERKLSHWLEEMNCQLIAMALERIDAELYQIYRSQGWRVARRDSRTIYCRYGELTYTRRLLQKDGKSFY
PLDRKMGFEPRKHYSMGMIERIVEAVAITTSRSASELLQSLAGITISHQSVISLKNYAGKKAKAYEKALAEEEKVEKPTQPEIIAIEGDGIVLKNKEKGG
VSEVHRLQVYEGVRKNGNRTELVGLRCFASTSRKELFAMVRSYLLGHYDLSKTTVLSNGDGGSGYQFQDFERMVEGCLDHQHFRDCYHVHEKIRNRLSFC
NKELVDHIIRELHRTDNIMKQIPVWMDTARSCARTEADLEEVDKLQSYLERNAPYIPSLSQRGIHTEIHLGTAETNHRFYSYRMKRQGRSWSSEGMECMV
WVLTARKNKTLTAALLYHANGKSYKKMDRAMHKAAVQTERKIAQNVRSEAQKRKMRNYRPGCLEGRIGVYGASSSPMGRLARAIQKY
PLDRKMGFEPRKHYSMGMIERIVEAVAITTSRSASELLQSLAGITISHQSVISLKNYAGKKAKAYEKALAEEEKVEKPTQPEIIAIEGDGIVLKNKEKGG
VSEVHRLQVYEGVRKNGNRTELVGLRCFASTSRKELFAMVRSYLLGHYDLSKTTVLSNGDGGSGYQFQDFERMVEGCLDHQHFRDCYHVHEKIRNRLSFC
NKELVDHIIRELHRTDNIMKQIPVWMDTARSCARTEADLEEVDKLQSYLERNAPYIPSLSQRGIHTEIHLGTAETNHRFYSYRMKRQGRSWSSEGMECMV
WVLTARKNKTLTAALLYHANGKSYKKMDRAMHKAAVQTERKIAQNVRSEAQKRKMRNYRPGCLEGRIGVYGASSSPMGRLARAIQKY
Blast result :
Comments
ISDsu1 is 55% aa similar to ISLhe11.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References