ISTph1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_018870 | ND | Thermacetogenium phaeum | Thermacetogenium phaeum DSM 12270 |
DNA section
IS Length : 1783 bp
Ends
IR Length : 19/24
IRL : GGCCATGTAAAATTTCAGTAGGTAAAAGAAGGGGATCGGCTTCTTAAAAA
IRR : GTCCATGTCAAGATCCAGTAGGTATTTTTAATAAAATTTTTCCCCTTAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATTCCAA | TTTGCTCAA | ACGCTGATTG | 9 |
CATCCTCTAT | AAACCAGTA | CAGGTGCTTG | 9 |
AGGCTTGGTT | GTTCAAGAG | TAAATCCGGC | 9 |
TGTTTTTTAT | GGATATTTA | TCAAAAATGG | 9 |
TCCATAAACC | TCATCTAGA | TATAATCTTG | 9 |
ATCTTCATTA | ACTGAAAAA | GCTTCGACAT | 9 |
DNA sequence
GGCCATGTAAAATTTCAGTAGGTAAAAGAAGGGGATCGGCTTCTTAAAAAGAAAAGAGACCTCGGCACCCAAAATCTATCACCCCAAAAAGGAGTGTGAG
GTCTCATGTTAGATATTCGCCACATAGTGGGGGCAGTCCTTCTTTTTGTCAAAGGTTTAGTCAAATTAATTGGAGAGTGCGAAGACTTTTCTGAGCTTGA
GAAAGGAGTTCACGAACTCTGCCAGGACGTGTGTAACCAGATTTTCACCTGGGCATTAGAAAAGATCGATACCCATCTGATGAATGAACGAGACCGAAGC
ATCTGGGAGGTTGTCGGTTTTCGGACAAAAACAGCCATCAGCACCTTTGGGGAATTTCCCTTAAAAAGGCGCCTGTACAGGAACAAAGAAACCGGGGAAA
CCAAATTCTTTTTAGACGAACTGCTGGGCTGGCCGGAGCGGGCCAGGGTTACTCCTTACCTAAAAGAGTTGGCAATCAAACTAAGCACCGAACTTTCCTT
TGGCCGGGCAGCGGAGATATTGAGTTATCTTGTACCTAAATTAAGCACCATGACCATCTGGCATATCACCCAGGAAGCAGGCGAAATACTGCAGCAAGAA
GGGGAAGAGAAGAGAGCGGCGGTATTTGAAGACGGAGAAGCACCAAGTGGGAAAGAAGTGGTTCGGGAGTTGCATATTGAAGGTGACGGAGTGATAGTCA
ATCTGCAACGGGAAAAAGAGAAGCGAGGAGAAATCAAACACATAGTAACCTACGAAGGGAAGAAACAAGTTAGCCGGAACCGCTTTGCCCTGCAAAACAA
GCTTGTTGTAAGCACCCTAAGTGAAGGACAAGTGGCCTGGGAAGAGAGCTATGCTCGGGCTGGGGGGAAATGGGATTTAGAACAGATCAAAGAGATCTAC
ATAGGTGGCGATGGAGCAAAATGGATCAAAGAGGGGCTGGAATACTTCCCTGGTGCCGTATACTGCTTAGACCCATACCATCTAAACAGGCATTTAACCG
AAGCCCTTTGGTATGACGAAGAAACCTTTCAGAAAGTAGGCGCAGCCATCTCTCATAGCAACTGGCAGGAAACCCAAGCAATACTCACAGAAGCAATCAA
AAAAACCAGAGGCAACCGGAAAAAGAGGCTCATCAAGCTATTGCATTATCTTGAAGAGAACTGGACGGGGATTATTAACTCGGCAGGAGCAAAACGTTTA
GGAACCATCGAAGGGCAGATTCAGCACAACGTAGCACGGCGGATGAAACGCCTGGGGGCCAAGTGGACCACAACCGGAGGAGACCGGATGGCCCGGCTTC
TGGCTGCCAAAGCAAACGGAGAGCTTAGCAATTATGCTTCGCGCTGGCCAGTGGAACATGGAAAGCTGAAGGAGATAGCGCAGATAAAACCGGTAGAAAA
GTCGGTAGAAAAACAAAAAGCCGGAGAAATAGGGGAATGGCTGCAGGCGACAATACCGGCATTAAAAGGGCCTTTTGCGGATCGTCCCTGGATAAAACAT
GTTTTACGGGAACTGACCCGGCCGGAATTTGCTGCTCTTATTTGCTAACCGGTTTCCCGAGTAGCACTGATAGCTTGGCCTCTACATGTGTTAAATGTTT
TGCGACGGGGTGACGTGTTATTGTTGTCTGTTCCTCCTAGCTACCTGGTTGTCAAGTTTATCTCAACAATCTTCAGTTAAATTCAAGGTCAAAGCCATTG
CTTTGAAGCTTAAGGTTTTGAACGTCGAGGTCTCTTAAGGGGAAAAATTTTATTAAAAATACCTACTGGATCTTGACATGGAC
GTCTCATGTTAGATATTCGCCACATAGTGGGGGCAGTCCTTCTTTTTGTCAAAGGTTTAGTCAAATTAATTGGAGAGTGCGAAGACTTTTCTGAGCTTGA
GAAAGGAGTTCACGAACTCTGCCAGGACGTGTGTAACCAGATTTTCACCTGGGCATTAGAAAAGATCGATACCCATCTGATGAATGAACGAGACCGAAGC
ATCTGGGAGGTTGTCGGTTTTCGGACAAAAACAGCCATCAGCACCTTTGGGGAATTTCCCTTAAAAAGGCGCCTGTACAGGAACAAAGAAACCGGGGAAA
CCAAATTCTTTTTAGACGAACTGCTGGGCTGGCCGGAGCGGGCCAGGGTTACTCCTTACCTAAAAGAGTTGGCAATCAAACTAAGCACCGAACTTTCCTT
TGGCCGGGCAGCGGAGATATTGAGTTATCTTGTACCTAAATTAAGCACCATGACCATCTGGCATATCACCCAGGAAGCAGGCGAAATACTGCAGCAAGAA
GGGGAAGAGAAGAGAGCGGCGGTATTTGAAGACGGAGAAGCACCAAGTGGGAAAGAAGTGGTTCGGGAGTTGCATATTGAAGGTGACGGAGTGATAGTCA
ATCTGCAACGGGAAAAAGAGAAGCGAGGAGAAATCAAACACATAGTAACCTACGAAGGGAAGAAACAAGTTAGCCGGAACCGCTTTGCCCTGCAAAACAA
GCTTGTTGTAAGCACCCTAAGTGAAGGACAAGTGGCCTGGGAAGAGAGCTATGCTCGGGCTGGGGGGAAATGGGATTTAGAACAGATCAAAGAGATCTAC
ATAGGTGGCGATGGAGCAAAATGGATCAAAGAGGGGCTGGAATACTTCCCTGGTGCCGTATACTGCTTAGACCCATACCATCTAAACAGGCATTTAACCG
AAGCCCTTTGGTATGACGAAGAAACCTTTCAGAAAGTAGGCGCAGCCATCTCTCATAGCAACTGGCAGGAAACCCAAGCAATACTCACAGAAGCAATCAA
AAAAACCAGAGGCAACCGGAAAAAGAGGCTCATCAAGCTATTGCATTATCTTGAAGAGAACTGGACGGGGATTATTAACTCGGCAGGAGCAAAACGTTTA
GGAACCATCGAAGGGCAGATTCAGCACAACGTAGCACGGCGGATGAAACGCCTGGGGGCCAAGTGGACCACAACCGGAGGAGACCGGATGGCCCGGCTTC
TGGCTGCCAAAGCAAACGGAGAGCTTAGCAATTATGCTTCGCGCTGGCCAGTGGAACATGGAAAGCTGAAGGAGATAGCGCAGATAAAACCGGTAGAAAA
GTCGGTAGAAAAACAAAAAGCCGGAGAAATAGGGGAATGGCTGCAGGCGACAATACCGGCATTAAAAGGGCCTTTTGCGGATCGTCCCTGGATAAAACAT
GTTTTACGGGAACTGACCCGGCCGGAATTTGCTGCTCTTATTTGCTAACCGGTTTCCCGAGTAGCACTGATAGCTTGGCCTCTACATGTGTTAAATGTTT
TGCGACGGGGTGACGTGTTATTGTTGTCTGTTCCTCCTAGCTACCTGGTTGTCAAGTTTATCTCAACAATCTTCAGTTAAATTCAAGGTCAAAGCCATTG
CTTTGAAGCTTAAGGTTTTGAACGTCGAGGTCTCTTAAGGGGAAAAATTTTATTAAAAATACCTACTGGATCTTGACATGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1443 bp | 480 aa | 106 | 1548 | + | No |
Chemistry : DDE
ORF sequence :
MLDIRHIVGAVLLFVKGLVKLIGECEDFSELEKGVHELCQDVCNQIFTWALEKIDTRLMNERDRSIWEVVGFRTKTAISTFGEFPLKRRLYRNKETGETK
FFLDELLGWPERARVTPYLKELAIKLSTELSFGRAAEILSYLVPKLSTMTIWHITQEAGEILQREGEEKRAAVFEDGGAPGGKEVVGELHIEGDGVIVNL
QREKEKRGEIKHIVTYEGKKQVSRNRFALQNKLVVSTLSEGQVAWEESYARAGGKWDLEQIKEIYIGGDGAKWIKEGLEYFPGAVYCLDPYHLNRHLTEA
LWYDEETFQKVGAAISHSNWQETQAILTEAIKKTRGNRKKRLIKLLHYLEENWTGIINSAGAKRLGTIEGQIQHNVARRMKRLGAKWTTTGGDRMARLLA
AKANGELSNYASRWPVEHGKLKEIAQIKPVEKSVEKQKAGEIGEWLQATIPALKGPFADRPWIKHVLRELTRPEFAALIC
FFLDELLGWPERARVTPYLKELAIKLSTELSFGRAAEILSYLVPKLSTMTIWHITQEAGEILQREGEEKRAAVFEDGGAPGGKEVVGELHIEGDGVIVNL
QREKEKRGEIKHIVTYEGKKQVSRNRFALQNKLVVSTLSEGQVAWEESYARAGGKWDLEQIKEIYIGGDGAKWIKEGLEYFPGAVYCLDPYHLNRHLTEA
LWYDEETFQKVGAAISHSNWQETQAILTEAIKKTRGNRKKRLIKLLHYLEENWTGIINSAGAKRLGTIEGQIQHNVARRMKRLGAKWTTTGGDRMARLLA
AKANGELSNYASRWPVEHGKLKEIAQIKPVEKSVEKQKAGEIGEWLQATIPALKGPFADRPWIKHVLRELTRPEFAALIC
Blast result :
Comments
ISTph1 is 61% aa similar to ISCde3.
References
1] ISfinder annotation (2013)
2] Oehler,D., Poehlein,A., Leimbach,A., Muller,N., Daniel,R., Gottschalk,G. and Schink,B. (2012) BMC Genomics 13 (1), 723.
2] Oehler,D., Poehlein,A., Leimbach,A., Muller,N., Daniel,R., Gottschalk,G. and Schink,B. (2012) BMC Genomics 13 (1), 723.