ISTph1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_018870 ND Thermacetogenium phaeum
Thermacetogenium phaeum DSM 12270
DNA section
IS Length : 1783 bp

Ends


IR Length : 19/24

IRL : GGCCATGTAAAATTTCAGTAGGTAAAAGAAGGGGATCGGCTTCTTAAAAA
IRR : GTCCATGTCAAGATCCAGTAGGTATTTTTAATAAAATTTTTCCCCTTAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATTCCAATTTGCTCAAACGCTGATTG9
CATCCTCTATAAACCAGTACAGGTGCTTG9
AGGCTTGGTTGTTCAAGAGTAAATCCGGC9
TGTTTTTTATGGATATTTATCAAAAATGG9
TCCATAAACCTCATCTAGATATAATCTTG9
ATCTTCATTAACTGAAAAAGCTTCGACAT9

DNA sequence

GGCCATGTAAAATTTCAGTAGGTAAAAGAAGGGGATCGGCTTCTTAAAAAGAAAAGAGACCTCGGCACCCAAAATCTATCACCCCAAAAAGGAGTGTGAG
GTCTCATGTTAGATATTCGCCACATAGTGGGGGCAGTCCTTCTTTTTGTCAAAGGTTTAGTCAAATTAATTGGAGAGTGCGAAGACTTTTCTGAGCTTGA
GAAAGGAGTTCACGAACTCTGCCAGGACGTGTGTAACCAGATTTTCACCTGGGCATTAGAAAAGATCGATACCCATCTGATGAATGAACGAGACCGAAGC
ATCTGGGAGGTTGTCGGTTTTCGGACAAAAACAGCCATCAGCACCTTTGGGGAATTTCCCTTAAAAAGGCGCCTGTACAGGAACAAAGAAACCGGGGAAA
CCAAATTCTTTTTAGACGAACTGCTGGGCTGGCCGGAGCGGGCCAGGGTTACTCCTTACCTAAAAGAGTTGGCAATCAAACTAAGCACCGAACTTTCCTT
TGGCCGGGCAGCGGAGATATTGAGTTATCTTGTACCTAAATTAAGCACCATGACCATCTGGCATATCACCCAGGAAGCAGGCGAAATACTGCAGCAAGAA
GGGGAAGAGAAGAGAGCGGCGGTATTTGAAGACGGAGAAGCACCAAGTGGGAAAGAAGTGGTTCGGGAGTTGCATATTGAAGGTGACGGAGTGATAGTCA
ATCTGCAACGGGAAAAAGAGAAGCGAGGAGAAATCAAACACATAGTAACCTACGAAGGGAAGAAACAAGTTAGCCGGAACCGCTTTGCCCTGCAAAACAA
GCTTGTTGTAAGCACCCTAAGTGAAGGACAAGTGGCCTGGGAAGAGAGCTATGCTCGGGCTGGGGGGAAATGGGATTTAGAACAGATCAAAGAGATCTAC
ATAGGTGGCGATGGAGCAAAATGGATCAAAGAGGGGCTGGAATACTTCCCTGGTGCCGTATACTGCTTAGACCCATACCATCTAAACAGGCATTTAACCG
AAGCCCTTTGGTATGACGAAGAAACCTTTCAGAAAGTAGGCGCAGCCATCTCTCATAGCAACTGGCAGGAAACCCAAGCAATACTCACAGAAGCAATCAA
AAAAACCAGAGGCAACCGGAAAAAGAGGCTCATCAAGCTATTGCATTATCTTGAAGAGAACTGGACGGGGATTATTAACTCGGCAGGAGCAAAACGTTTA
GGAACCATCGAAGGGCAGATTCAGCACAACGTAGCACGGCGGATGAAACGCCTGGGGGCCAAGTGGACCACAACCGGAGGAGACCGGATGGCCCGGCTTC
TGGCTGCCAAAGCAAACGGAGAGCTTAGCAATTATGCTTCGCGCTGGCCAGTGGAACATGGAAAGCTGAAGGAGATAGCGCAGATAAAACCGGTAGAAAA
GTCGGTAGAAAAACAAAAAGCCGGAGAAATAGGGGAATGGCTGCAGGCGACAATACCGGCATTAAAAGGGCCTTTTGCGGATCGTCCCTGGATAAAACAT
GTTTTACGGGAACTGACCCGGCCGGAATTTGCTGCTCTTATTTGCTAACCGGTTTCCCGAGTAGCACTGATAGCTTGGCCTCTACATGTGTTAAATGTTT
TGCGACGGGGTGACGTGTTATTGTTGTCTGTTCCTCCTAGCTACCTGGTTGTCAAGTTTATCTCAACAATCTTCAGTTAAATTCAAGGTCAAAGCCATTG
CTTTGAAGCTTAAGGTTTTGAACGTCGAGGTCTCTTAAGGGGAAAAATTTTATTAAAAATACCTACTGGATCTTGACATGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1443 bp480 aa1061548+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLDIRHIVGAVLLFVKGLVKLIGECEDFSELEKGVHELCQDVCNQIFTWALEKIDTRLMNERDRSIWEVVGFRTKTAISTFGEFPLKRRLYRNKETGETK
FFLDELLGWPERARVTPYLKELAIKLSTELSFGRAAEILSYLVPKLSTMTIWHITQEAGEILQREGEEKRAAVFEDGGAPGGKEVVGELHIEGDGVIVNL
QREKEKRGEIKHIVTYEGKKQVSRNRFALQNKLVVSTLSEGQVAWEESYARAGGKWDLEQIKEIYIGGDGAKWIKEGLEYFPGAVYCLDPYHLNRHLTEA
LWYDEETFQKVGAAISHSNWQETQAILTEAIKKTRGNRKKRLIKLLHYLEENWTGIINSAGAKRLGTIEGQIQHNVARRMKRLGAKWTTTGGDRMARLLA
AKANGELSNYASRWPVEHGKLKEIAQIKPVEKSVEKQKAGEIGEWLQATIPALKGPFADRPWIKHVLRELTRPEFAALIC

 

Blast result :
Comments
ISTph1 is 61% aa similar to ISCde3.
References
1] ISfinder annotation (2013)
2] Oehler,D., Poehlein,A., Leimbach,A., Muller,N., Daniel,R., Gottschalk,G. and Schink,B. (2012) BMC Genomics 13 (1), 723.