ISBco6

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016023 ND Bacillus coagulans
Bacillus coagulans 36D1
Bacillus coagulans 2-6
DNA section
IS Length : 1823 bp

Ends


IR Length : 22/27

IRL : GTATGTGTAAAATTTTACTCGACGGGGCATATGAGTGGAAAAAAATGGGA
IRR : GTATGTGTCAAGTTTTTCTCGACAAGGTTTAAATATCGGGTATTCCAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
AGCAGCATTCACACGCCGCTCTTGTTTCG9
TTTTTTACAGGAATTGTTATTGAAATTTG9
CATAAGGCTGAATAAATCCTGGGCTCTTT9
AACTTCCCAACAACAAAACAAAATGGTTG9
AACACTTGTTGAAAATCCTTCTCATTTG8
ATGGCAAGCTGGAAAATTGGATGGCTGG8
AAAAGGATTCGGAAATTAGAAATTTTAT8
GAATAACAGACGGTTTTTTAGTCCTCTT8
TTCATCCGCGGCAACCGGGTTCCCCTTT8
CCCTTTCTTTTAAATATAACATAACTGG8
TACAGACATGATCCATCACG0
ATCAACTTTGCCGGGCACGAGGTTTGTTG9
AGAAAATGATCCCCTTCGAT0
TTTTTTTAACATATTTCAGG0

DNA sequence

GTATGTGTAAAATTTTACTCGACGGGGCATATGAGTGGAAAAAAATGGGAAGACGCTCTATCATCTAATTGTACACTTCAAGATGAACATCTAGAGAGAG
AGGTCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAGAGTCTTATCGAATTTGAAGAACAGCTTAAACTTCTGATGCAGAAG
GCTTTTACACAATGGGTTGGGGAAATATTTGAAGAGTTAGATAAAATAATTAAACAGGAGAAGTTAGAGGAGGGCTGGGTGTACTGCCGGAGTGATAACA
GAAACATTCAGTTTCTATTTGGAAGTGTGACCTTTAAACGTTCATTAATGCATGACAAGAGAGGAAATTCCCATTATCCTCTGGATGAATGGTTAGGGCT
GGTACCACACCAACGATACAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAAGTAGCTGATATTTTAAAAGAGTGG
ACAGCAGTGAGTCTTAGTCACACAACTGTAGGGAACATGGTAAAACACGTAGGGAAAACTCAGGCGGAAGCCGATAAGGCACTTGTAGAAGAGCTAGAAA
TAGCTGTTTCCCTGCCTGAGGGGAAGAAGGTAGACTACCTGTTTTCTGAAGCAGATGGTGTATTCGTTCGGGGACTAAAAAAGAAACAGAGTATGGAAGT
CCACCACGCCATTCTCTATGAGGGATGGCAAACCAATGGTAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACAACGGAAGCCATCCAGACATTT
TGGGATGAAGTCCAAGCCACAGCTGCCAACACCTACTCCCTCGAAAAAACGCATGTCATTACAAACAGTGATGGAGGTGCGGGATACACAGCTGAACGGT
TTCAAACAGCTTTCTCACAGTCGGAATTTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAG
CGAGATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAACTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAG
GCTCTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACAGGGTGAAAAACGTGCCGGAAGGTGCGA
GAGGCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAA
AATCAAACAAGGCATACTCAATGGGACATTGAGAGAAGTCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATTCATCAGG
ATGTCTCAACTGCTCAAGCAGCCTGTACGCCCGTCAGTGGGCGTAAAGCACGGATCAGTTGCCCTGCATTCAAGCAGTTCATCGGCAATGGGACATTTAA
GCAAAATATTAGAGCTTTCGTTTTAAGCCTGGCTCAGTGGGGACTGATCGTTGAGGCGCGCGAAATTTACGAGACTCCTGCGGGAAAAGCGAGCCAGGAG
AGACCCCGCAGCGAGGTACGAGCGAGGAGGCTCGCCGGCCGACCGCGGAAAGCGAGTGAATTTCGCGCGCCTCAACATCCCCGTTATCCATCTTTATACG
GAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAGAGTGTCTTGGAATACCCGATATTTAAACCTT
GTCGAGAAAAACTTGACACATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1416 bp471 aa1111526+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIISIIAGLLKDTKSLIEFEEQLKLLMQKAFTQWVGEIFEELDKIIKQEKLEEGWVYCRSDNRNIQFLFGSVTFKRSLMHDKRGNSHYPLDEWLGLVPH
QRYSPLVELKVAELASENTYREVADILKEWTAVSLSHTTVGNMVKHVGKTQAEADKALVEELEIAVSLPEGKKVDYLFSEADGVFVRGLKKKQSMEVHHA
ILYEGWQTNGKRVSLRQPTVIMTTEAIQTFWDEVQATAANTYSLEKTHVITNSDGGAGYTAERFQTAFSQSEFPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQLTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDRVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREVYLKHRSRSERKQRNLKQFIRMSQLLKQPVRPSVGVKHGSVALHSSSSSAMGHLSKILELSF

 

Blast result :
Comments
ISBco6 is 95% aa similar to ISBco5.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References