ISBco6
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016023 | ND | Bacillus coagulans | Bacillus coagulans 36D1 Bacillus coagulans 2-6 |
DNA section
IS Length : 1823 bp
Ends
IR Length : 22/27
IRL : GTATGTGTAAAATTTTACTCGACGGGGCATATGAGTGGAAAAAAATGGGA
IRR : GTATGTGTCAAGTTTTTCTCGACAAGGTTTAAATATCGGGTATTCCAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCAGCATTC | ACACGCCGC | TCTTGTTTCG | 9 |
TTTTTTACAG | GAATTGTTA | TTGAAATTTG | 9 |
CATAAGGCTG | AATAAATCC | TGGGCTCTTT | 9 |
AACTTCCCAA | CAACAAAAC | AAAATGGTTG | 9 |
AACACTTGTT | GAAAATCC | TTCTCATTTG | 8 |
ATGGCAAGCT | GGAAAATT | GGATGGCTGG | 8 |
AAAAGGATTC | GGAAATTA | GAAATTTTAT | 8 |
GAATAACAGA | CGGTTTTT | TAGTCCTCTT | 8 |
TTCATCCGCG | GCAACCGG | GTTCCCCTTT | 8 |
CCCTTTCTTT | TAAATATA | ACATAACTGG | 8 |
TACAGACATG | ATCCATCACG | 0 | |
ATCAACTTTG | CCGGGCACG | AGGTTTGTTG | 9 |
AGAAAATGAT | CCCCTTCGAT | 0 | |
TTTTTTTAAC | ATATTTCAGG | 0 |
DNA sequence
GTATGTGTAAAATTTTACTCGACGGGGCATATGAGTGGAAAAAAATGGGAAGACGCTCTATCATCTAATTGTACACTTCAAGATGAACATCTAGAGAGAG
AGGTCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAGAGTCTTATCGAATTTGAAGAACAGCTTAAACTTCTGATGCAGAAG
GCTTTTACACAATGGGTTGGGGAAATATTTGAAGAGTTAGATAAAATAATTAAACAGGAGAAGTTAGAGGAGGGCTGGGTGTACTGCCGGAGTGATAACA
GAAACATTCAGTTTCTATTTGGAAGTGTGACCTTTAAACGTTCATTAATGCATGACAAGAGAGGAAATTCCCATTATCCTCTGGATGAATGGTTAGGGCT
GGTACCACACCAACGATACAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAAGTAGCTGATATTTTAAAAGAGTGG
ACAGCAGTGAGTCTTAGTCACACAACTGTAGGGAACATGGTAAAACACGTAGGGAAAACTCAGGCGGAAGCCGATAAGGCACTTGTAGAAGAGCTAGAAA
TAGCTGTTTCCCTGCCTGAGGGGAAGAAGGTAGACTACCTGTTTTCTGAAGCAGATGGTGTATTCGTTCGGGGACTAAAAAAGAAACAGAGTATGGAAGT
CCACCACGCCATTCTCTATGAGGGATGGCAAACCAATGGTAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACAACGGAAGCCATCCAGACATTT
TGGGATGAAGTCCAAGCCACAGCTGCCAACACCTACTCCCTCGAAAAAACGCATGTCATTACAAACAGTGATGGAGGTGCGGGATACACAGCTGAACGGT
TTCAAACAGCTTTCTCACAGTCGGAATTTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAG
CGAGATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAACTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAG
GCTCTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACAGGGTGAAAAACGTGCCGGAAGGTGCGA
GAGGCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAA
AATCAAACAAGGCATACTCAATGGGACATTGAGAGAAGTCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATTCATCAGG
ATGTCTCAACTGCTCAAGCAGCCTGTACGCCCGTCAGTGGGCGTAAAGCACGGATCAGTTGCCCTGCATTCAAGCAGTTCATCGGCAATGGGACATTTAA
GCAAAATATTAGAGCTTTCGTTTTAAGCCTGGCTCAGTGGGGACTGATCGTTGAGGCGCGCGAAATTTACGAGACTCCTGCGGGAAAAGCGAGCCAGGAG
AGACCCCGCAGCGAGGTACGAGCGAGGAGGCTCGCCGGCCGACCGCGGAAAGCGAGTGAATTTCGCGCGCCTCAACATCCCCGTTATCCATCTTTATACG
GAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAGAGTGTCTTGGAATACCCGATATTTAAACCTT
GTCGAGAAAAACTTGACACATAC
AGGTCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAGAGTCTTATCGAATTTGAAGAACAGCTTAAACTTCTGATGCAGAAG
GCTTTTACACAATGGGTTGGGGAAATATTTGAAGAGTTAGATAAAATAATTAAACAGGAGAAGTTAGAGGAGGGCTGGGTGTACTGCCGGAGTGATAACA
GAAACATTCAGTTTCTATTTGGAAGTGTGACCTTTAAACGTTCATTAATGCATGACAAGAGAGGAAATTCCCATTATCCTCTGGATGAATGGTTAGGGCT
GGTACCACACCAACGATACAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAAGTAGCTGATATTTTAAAAGAGTGG
ACAGCAGTGAGTCTTAGTCACACAACTGTAGGGAACATGGTAAAACACGTAGGGAAAACTCAGGCGGAAGCCGATAAGGCACTTGTAGAAGAGCTAGAAA
TAGCTGTTTCCCTGCCTGAGGGGAAGAAGGTAGACTACCTGTTTTCTGAAGCAGATGGTGTATTCGTTCGGGGACTAAAAAAGAAACAGAGTATGGAAGT
CCACCACGCCATTCTCTATGAGGGATGGCAAACCAATGGTAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACAACGGAAGCCATCCAGACATTT
TGGGATGAAGTCCAAGCCACAGCTGCCAACACCTACTCCCTCGAAAAAACGCATGTCATTACAAACAGTGATGGAGGTGCGGGATACACAGCTGAACGGT
TTCAAACAGCTTTCTCACAGTCGGAATTTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAG
CGAGATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAACTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAG
GCTCTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACAGGGTGAAAAACGTGCCGGAAGGTGCGA
GAGGCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAA
AATCAAACAAGGCATACTCAATGGGACATTGAGAGAAGTCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATTCATCAGG
ATGTCTCAACTGCTCAAGCAGCCTGTACGCCCGTCAGTGGGCGTAAAGCACGGATCAGTTGCCCTGCATTCAAGCAGTTCATCGGCAATGGGACATTTAA
GCAAAATATTAGAGCTTTCGTTTTAAGCCTGGCTCAGTGGGGACTGATCGTTGAGGCGCGCGAAATTTACGAGACTCCTGCGGGAAAAGCGAGCCAGGAG
AGACCCCGCAGCGAGGTACGAGCGAGGAGGCTCGCCGGCCGACCGCGGAAAGCGAGTGAATTTCGCGCGCCTCAACATCCCCGTTATCCATCTTTATACG
GAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAGAGTGTCTTGGAATACCCGATATTTAAACCTT
GTCGAGAAAAACTTGACACATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1416 bp | 471 aa | 111 | 1526 | + | No |
Chemistry : DDE
ORF sequence :
MDIISIIAGLLKDTKSLIEFEEQLKLLMQKAFTQWVGEIFEELDKIIKQEKLEEGWVYCRSDNRNIQFLFGSVTFKRSLMHDKRGNSHYPLDEWLGLVPH
QRYSPLVELKVAELASENTYREVADILKEWTAVSLSHTTVGNMVKHVGKTQAEADKALVEELEIAVSLPEGKKVDYLFSEADGVFVRGLKKKQSMEVHHA
ILYEGWQTNGKRVSLRQPTVIMTTEAIQTFWDEVQATAANTYSLEKTHVITNSDGGAGYTAERFQTAFSQSEFPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQLTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDRVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREVYLKHRSRSERKQRNLKQFIRMSQLLKQPVRPSVGVKHGSVALHSSSSSAMGHLSKILELSF
QRYSPLVELKVAELASENTYREVADILKEWTAVSLSHTTVGNMVKHVGKTQAEADKALVEELEIAVSLPEGKKVDYLFSEADGVFVRGLKKKQSMEVHHA
ILYEGWQTNGKRVSLRQPTVIMTTEAIQTFWDEVQATAANTYSLEKTHVITNSDGGAGYTAERFQTAFSQSEFPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQLTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDRVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREVYLKHRSRSERKQRNLKQFIRMSQLLKQPVRPSVGVKHGSVALHSSSSSAMGHLSKILELSF
Blast result :
Comments
ISBco6 is 95% aa similar to ISBco5.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References