ISBco5

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016023 ND Bacillus coagulans
Bacillus coagulans 36D1
Bacillus coagulans 2-6
DNA section
IS Length : 1554 bp

Ends


IR Length : 19/22

IRL : GTATGTGTAAAATTTTACTCGAGGGGGCAAATGAGTGAAAAAAAATGGGA
IRR : GTATGTGTCAAGTTTTTCTCGACAAGGTTTAAATATCGGGTATTCCAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTTGCAGCAATATTTTCCAAAACTTG8
TTGGTGGAAACAGTGATCCA0

DNA sequence

GTATGTGTAAAATTTTACTCGAGGGGGCAAATGAGTGAAAAAAAATGGGAAGACACTCTATCATCTAAATGTACACCTTGAATGAACATCTAGAGAGAGG
TCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAAAGTCTTATGGAATTTGAAGAACAAATTAAAATTCTGATGCAGAAGGTT
TTTACACAATGGGTTGGGGATGTATTTGAGGAGTTAGATAAAACAATTAAACAAAAGAAGTTGGAGGAAGGCTGGGAGTACTGCCGTAGTGATAACAGAA
GCGTTCAGTTTCTATTTGGAAGTGTGACTTTTAAACGTTCATTAATGCGTGATAAGAGAGGGAACTCACATTATCCCTTGGATGAATGCTTGGGGCTGGT
ACCCCACCGGAGATATAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAGGTGGCGAATATTTTAAAAGAATGGACA
GCCGTGAGTCTTAGTCATACAACTGTAGGGGAAATGGTGAAACGCGTAGGAAAAACGCAGGTGGAAGCCGACAAGGCCCTTGTAGAAGAGATGGAAATAG
CTGCTTCACTGCCTGATGGGAAGAAGGTAGACTACCTGTTTTCCGAAGCAGATGGCGTATTCATCCGGGGACTGGAAAAGAAACAGGGTATGGAAGTCCG
CCATGCCATTCTCTATGAAGGTTGGGAAACCAATGGAAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACGACGGAAGACATTCAGACATTTTGG
GATGAAGTCCAAGCCACAGCTGCCAACACCTATTCCCTCGAAAAAGCGCAAGTCATTACAAACAGTGATGGAGGTGCTGGGTACACAGCTGAACGGTTTC
AAACAGCATTCTCACAGTCGGAAATTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAGCGA
GATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAATTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAGGCT
CTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACGGGGTGAAAAACGTGCCGGAAGGTGCGAGAG
GCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAAAAT
CAAACAAGGCATACTCAATGGGACATTGAGAGAAGCCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATCCATCAGGATG
TCTCAACATCCCCGTTATCCATCTTTATACGGAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAG
AGTGTCTTGGAATACCCGATATTTAAACCTTGTCGAGAAAAACTTGACACATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa1081472+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIISIIAGLLKDTKSLMEFEEQIKILMQKVFTQWVGDVFEELDKTIKQKKLEEGWEYCRSDNRSVQFLFGSVTFKRSLMRDKRGNSHYPLDECLGLVPH
RRYSPLVELKVAELASENTYREVANILKEWTAVSLSHTTVGEMVKRVGKTQVEADKALVEEMEIAASLPDGKKVDYLFSEADGVFIRGLEKKQGMEVRHA
ILYEGWETNGKRVSLRQPTVIMTTEDIQTFWDEVQATAANTYSLEKAQVITNSDGGAGYTAERFQTAFSQSEIPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQFTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDGVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREAYLKHRSRSERKQRNLKQSIRMSQHPRYPSLYGNITSFPKITPSK

 

Blast result :
Comments
ISBco5 is 46% aa similar to ISLca4.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References