ISBco5
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016023 | ND | Bacillus coagulans | Bacillus coagulans 36D1 Bacillus coagulans 2-6 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 19/22
IRL : GTATGTGTAAAATTTTACTCGAGGGGGCAAATGAGTGAAAAAAAATGGGA
IRR : GTATGTGTCAAGTTTTTCTCGACAAGGTTTAAATATCGGGTATTCCAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTTGCAGC | AATATTTT | CCAAAACTTG | 8 |
TTGGTGGAAA | CAGTGATCCA | 0 |
DNA sequence
GTATGTGTAAAATTTTACTCGAGGGGGCAAATGAGTGAAAAAAAATGGGAAGACACTCTATCATCTAAATGTACACCTTGAATGAACATCTAGAGAGAGG
TCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAAAGTCTTATGGAATTTGAAGAACAAATTAAAATTCTGATGCAGAAGGTT
TTTACACAATGGGTTGGGGATGTATTTGAGGAGTTAGATAAAACAATTAAACAAAAGAAGTTGGAGGAAGGCTGGGAGTACTGCCGTAGTGATAACAGAA
GCGTTCAGTTTCTATTTGGAAGTGTGACTTTTAAACGTTCATTAATGCGTGATAAGAGAGGGAACTCACATTATCCCTTGGATGAATGCTTGGGGCTGGT
ACCCCACCGGAGATATAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAGGTGGCGAATATTTTAAAAGAATGGACA
GCCGTGAGTCTTAGTCATACAACTGTAGGGGAAATGGTGAAACGCGTAGGAAAAACGCAGGTGGAAGCCGACAAGGCCCTTGTAGAAGAGATGGAAATAG
CTGCTTCACTGCCTGATGGGAAGAAGGTAGACTACCTGTTTTCCGAAGCAGATGGCGTATTCATCCGGGGACTGGAAAAGAAACAGGGTATGGAAGTCCG
CCATGCCATTCTCTATGAAGGTTGGGAAACCAATGGAAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACGACGGAAGACATTCAGACATTTTGG
GATGAAGTCCAAGCCACAGCTGCCAACACCTATTCCCTCGAAAAAGCGCAAGTCATTACAAACAGTGATGGAGGTGCTGGGTACACAGCTGAACGGTTTC
AAACAGCATTCTCACAGTCGGAAATTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAGCGA
GATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAATTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAGGCT
CTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACGGGGTGAAAAACGTGCCGGAAGGTGCGAGAG
GCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAAAAT
CAAACAAGGCATACTCAATGGGACATTGAGAGAAGCCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATCCATCAGGATG
TCTCAACATCCCCGTTATCCATCTTTATACGGAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAG
AGTGTCTTGGAATACCCGATATTTAAACCTTGTCGAGAAAAACTTGACACATAC
TCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAAAGTCTTATGGAATTTGAAGAACAAATTAAAATTCTGATGCAGAAGGTT
TTTACACAATGGGTTGGGGATGTATTTGAGGAGTTAGATAAAACAATTAAACAAAAGAAGTTGGAGGAAGGCTGGGAGTACTGCCGTAGTGATAACAGAA
GCGTTCAGTTTCTATTTGGAAGTGTGACTTTTAAACGTTCATTAATGCGTGATAAGAGAGGGAACTCACATTATCCCTTGGATGAATGCTTGGGGCTGGT
ACCCCACCGGAGATATAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAGGTGGCGAATATTTTAAAAGAATGGACA
GCCGTGAGTCTTAGTCATACAACTGTAGGGGAAATGGTGAAACGCGTAGGAAAAACGCAGGTGGAAGCCGACAAGGCCCTTGTAGAAGAGATGGAAATAG
CTGCTTCACTGCCTGATGGGAAGAAGGTAGACTACCTGTTTTCCGAAGCAGATGGCGTATTCATCCGGGGACTGGAAAAGAAACAGGGTATGGAAGTCCG
CCATGCCATTCTCTATGAAGGTTGGGAAACCAATGGAAAAAGGGTCTCCCTGCGTCAGCCCACAGTCATCATGACGACGGAAGACATTCAGACATTTTGG
GATGAAGTCCAAGCCACAGCTGCCAACACCTATTCCCTCGAAAAAGCGCAAGTCATTACAAACAGTGATGGAGGTGCTGGGTACACAGCTGAACGGTTTC
AAACAGCATTCTCACAGTCGGAAATTCCGGTGCTCAACCAGCTGGATACCTACCACGTTGCACAAGCCATCATAAGGACATTTGGGGGCGGAAAGAGCGA
GATCAAGGAGCAAATTAGAAAAGCGATTAGAACGCATGACCTGGACCAATTCACGTTATATTTGGATACGCACGAAAGCACCTTGACGGATAAAAAGGCT
CTCAAGAAAATCAAGGAATTCCGTTCGTATATCTTGAAAAACTGGGACCGCATTTTTGACTGGAGAGACGGGGTGAAAAACGTGCCGGAAGGTGCGAGAG
GCCTAGGAGCGATGGAATCGAATCAAAGGCATATCTCCTTCAGGATGAAAAAAAGGGGCATGCATTGGAGTGAACTTGGCGCAGAAGCCATGGTGAAAAT
CAAACAAGGCATACTCAATGGGACATTGAGAGAAGCCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATCCATCAGGATG
TCTCAACATCCCCGTTATCCATCTTTATACGGAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAG
AGTGTCTTGGAATACCCGATATTTAAACCTTGTCGAGAAAAACTTGACACATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 108 | 1472 | + | No |
Chemistry : DDE
ORF sequence :
MDIISIIAGLLKDTKSLMEFEEQIKILMQKVFTQWVGDVFEELDKTIKQKKLEEGWEYCRSDNRSVQFLFGSVTFKRSLMRDKRGNSHYPLDECLGLVPH
RRYSPLVELKVAELASENTYREVANILKEWTAVSLSHTTVGEMVKRVGKTQVEADKALVEEMEIAASLPDGKKVDYLFSEADGVFIRGLEKKQGMEVRHA
ILYEGWETNGKRVSLRQPTVIMTTEDIQTFWDEVQATAANTYSLEKAQVITNSDGGAGYTAERFQTAFSQSEIPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQFTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDGVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREAYLKHRSRSERKQRNLKQSIRMSQHPRYPSLYGNITSFPKITPSK
RRYSPLVELKVAELASENTYREVANILKEWTAVSLSHTTVGEMVKRVGKTQVEADKALVEEMEIAASLPDGKKVDYLFSEADGVFIRGLEKKQGMEVRHA
ILYEGWETNGKRVSLRQPTVIMTTEDIQTFWDEVQATAANTYSLEKAQVITNSDGGAGYTAERFQTAFSQSEIPVLNQLDTYHVAQAIIRTFGGGKSEIK
EQIRKAIRTHDLDQFTLYLDTHESTLTDKKALKKIKEFRSYILKNWDRIFDWRDGVKNVPEGARGLGAMESNQRHISFRMKKRGMHWSELGAEAMVKIKQ
GILNGTLREAYLKHRSRSERKQRNLKQSIRMSQHPRYPSLYGNITSFPKITPSK
Blast result :
Comments
ISBco5 is 46% aa similar to ISLca4.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References