ISCysp27
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011884 | ND | Cyanothece sp. | Cyanothece sp. PCC 7425 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 21/30
IRL : GAGCTATGTTTATTTGTGGTGTATGAGCAAAGGAGAGGAAAGGGCGTATC
IRR : GAGTTATTGTCAAATCTGGTGTATGAAGAAGAATTAAGCGGCGTTCCTAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGTAATAGC | GCAGTTTGAT | 0 | |
| CCTTCGATAC | GATCGCG | TGGTGGAAGC | 7 |
DNA sequence
GAGCTATGTTTATTTGTGGTGTATGAGCAAAGGAGAGGAAAGGGCGTATCCTGCTGGATAAGCAAAAGTAAAAACCAGACGAGGATACACCATGAGTAAC
GACAATCTTATTGCATTTCAAGCGCCAGACCCTCCCGCATCGTTTAGTGATGCCCTGACAGAACTGGTCCGTAACGGTGCTCGCCAAATCATTGCTCAAG
CTGTGGAGGCGGAATTGCAGGGGTTTTTAGCTCAGTACGAATCGCTTCAAGATGACCAGGGACGCCAAGCGGTGGTGCGCAATGGGTATCTGCCTGAACG
CACGATTGTGACTGGCGTGGGGGAGGTTGCCATTCAAGTGCCTAAGGTGCGCGACCGCAGTGGTAGGGGGATCAAGTTCAATTCGACGCTGTTACCTCCG
TACCTCAAACGGGTCCAGAGTGTGGAGGAGGTGCTGCCCTGGCTGTATCTCAAGGGCATTTCAACCGGGGATTTTTCCGAAGCCTTGGCATCCTTGCTGG
GAGCCCAAGCGGCAGGACTTTCGGCCAGCACCATCAGCCGCCTGAAAGCCAAATGGATCAAAGAGCACCAGCAATGGCAACAACGATCACTACTGGGGAA
ACGGTACGTGTATCTGTGGGCGGATGGAATCTACTTCAACATCCGCAACGAGGACGACCGCCAATGCATCCTTGTCGTCATCGGCGTCACTGACACAGGC
AGCAAGGAACTGCTGGGATTGGAAGCCGGATTTCGAGAGTCTGAACTGAGTTGGAAGCCGTTGCTGTTACGCCTACAAGACCAGGGGCTCAAACAGACCC
CAGAACTGGCGGTTGGAGATGGTGCCTTAGGGTTTTGGAAGGCGCTCGCGCAAGTGTTCCCGACCACTCGTGTCCAACGCTGCTGGGTGCACAAAACCGC
TAACGTCCTCAACCACTTACCCAAGAGCCAGCAACCCAAAGCCAAATCAGCCCTGCATGAGATCTACATGGCAGAGACTCAAGATGAAGCACAGACAGCG
TTTGACCGATTTATCAAGACCTATGATGCCAAATACCCCAAGGCGGTGGCGTGTTTATCCAAGGACCGTGAAGCCTTGTTAGCCTTTTATGATTTTCCGG
CTGAACATTGGGTGCATCTTCGCACCACCAATCCCATTGAATCCACCTTTGCGACGGTGCGCTTAAGGACGGATAAAACGCGAGGCTGTGTTTCACAGGA
GAGCATTTTGTCCTTGGTGTTCAAACTGGTACAAAGTGCTCAGAAACGGTGGTTACGCATTCGAGGCTTCAAACATTTAGCAGAGGTAATTGAAGGAGTG
AAATTCAAGGATGGCCTTCGAGCAGACCAGCAACTCGATTTCAAGGACAGTAGGAACGCCGCTTAATTCTTCTTCATACACCAGATTTGACAATAACTC
GACAATCTTATTGCATTTCAAGCGCCAGACCCTCCCGCATCGTTTAGTGATGCCCTGACAGAACTGGTCCGTAACGGTGCTCGCCAAATCATTGCTCAAG
CTGTGGAGGCGGAATTGCAGGGGTTTTTAGCTCAGTACGAATCGCTTCAAGATGACCAGGGACGCCAAGCGGTGGTGCGCAATGGGTATCTGCCTGAACG
CACGATTGTGACTGGCGTGGGGGAGGTTGCCATTCAAGTGCCTAAGGTGCGCGACCGCAGTGGTAGGGGGATCAAGTTCAATTCGACGCTGTTACCTCCG
TACCTCAAACGGGTCCAGAGTGTGGAGGAGGTGCTGCCCTGGCTGTATCTCAAGGGCATTTCAACCGGGGATTTTTCCGAAGCCTTGGCATCCTTGCTGG
GAGCCCAAGCGGCAGGACTTTCGGCCAGCACCATCAGCCGCCTGAAAGCCAAATGGATCAAAGAGCACCAGCAATGGCAACAACGATCACTACTGGGGAA
ACGGTACGTGTATCTGTGGGCGGATGGAATCTACTTCAACATCCGCAACGAGGACGACCGCCAATGCATCCTTGTCGTCATCGGCGTCACTGACACAGGC
AGCAAGGAACTGCTGGGATTGGAAGCCGGATTTCGAGAGTCTGAACTGAGTTGGAAGCCGTTGCTGTTACGCCTACAAGACCAGGGGCTCAAACAGACCC
CAGAACTGGCGGTTGGAGATGGTGCCTTAGGGTTTTGGAAGGCGCTCGCGCAAGTGTTCCCGACCACTCGTGTCCAACGCTGCTGGGTGCACAAAACCGC
TAACGTCCTCAACCACTTACCCAAGAGCCAGCAACCCAAAGCCAAATCAGCCCTGCATGAGATCTACATGGCAGAGACTCAAGATGAAGCACAGACAGCG
TTTGACCGATTTATCAAGACCTATGATGCCAAATACCCCAAGGCGGTGGCGTGTTTATCCAAGGACCGTGAAGCCTTGTTAGCCTTTTATGATTTTCCGG
CTGAACATTGGGTGCATCTTCGCACCACCAATCCCATTGAATCCACCTTTGCGACGGTGCGCTTAAGGACGGATAAAACGCGAGGCTGTGTTTCACAGGA
GAGCATTTTGTCCTTGGTGTTCAAACTGGTACAAAGTGCTCAGAAACGGTGGTTACGCATTCGAGGCTTCAAACATTTAGCAGAGGTAATTGAAGGAGTG
AAATTCAAGGATGGCCTTCGAGCAGACCAGCAACTCGATTTCAAGGACAGTAGGAACGCCGCTTAATTCTTCTTCATACACCAGATTTGACAATAACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1275 bp | 424 aa | 92 | 1366 | + | No |
Chemistry : DDE
ORF sequence :
MSNDNLIAFQAPDPPASFSDALTELVRNGARQIIAQAVEAELQGFLAQYESLQDDQGRQAVVRNGYLPERTIVTGVGEVAIQVPKVRDRSGRGIKFNSTL
LPPYLKRVQSVEEVLPWLYLKGISTGDFSEALASLLGAQAAGLSASTISRLKAKWIKEHQQWQQRSLLGKRYVYLWADGIYFNIRNEDDRQCILVVIGVT
DTGSKELLGLEAGFRESELSWKPLLLRLQDQGLKQTPELAVGDGALGFWKALAQVFPTTRVQRCWVHKTANVLNHLPKSQQPKAKSALHEIYMAETQDEA
QTAFDRFIKTYDAKYPKAVACLSKDREALLAFYDFPAEHWVHLRTTNPIESTFATVRLRTDKTRGCVSQESILSLVFKLVQSAQKRWLRIRGFKHLAEVI
EGVKFKDGLRADQQLDFKDSRNAA
LPPYLKRVQSVEEVLPWLYLKGISTGDFSEALASLLGAQAAGLSASTISRLKAKWIKEHQQWQQRSLLGKRYVYLWADGIYFNIRNEDDRQCILVVIGVT
DTGSKELLGLEAGFRESELSWKPLLLRLQDQGLKQTPELAVGDGALGFWKALAQVFPTTRVQRCWVHKTANVLNHLPKSQQPKAKSALHEIYMAETQDEA
QTAFDRFIKTYDAKYPKAVACLSKDREALLAFYDFPAEHWVHLRTTNPIESTFATVRLRTDKTRGCVSQESILSLVFKLVQSAQKRWLRIRGFKHLAEVI
EGVKFKDGLRADQQLDFKDSRNAA
Blast result :
Comments
ISCysp27 is 79% aa similar to ISTdr1.
References
1] ISfinder annotation (2013)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2009) Direct submission GenBank.