ISNisp4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMY01000004 | ND | Nitrobacter sp. | Nitrobacter sp. Nb-311A |
DNA section
IS Length : 1417 bp
Ends
IR Length : 19/24
IRL : GGAGCTATCGCTGAAAGTTGGTGACATCGGGCCTTGGGAAGGCGGCATAT
IRR : GAGCTATCGCCAATTTTTGGTGACGGCCGGGCCGATCAGGCGGCGGCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCACAAGGT | AAATCGATG | ACCCTGCGAC | 9 |
DNA sequence
GGAGCTATCGCTGAAAGTTGGTGACATCGGGCCTTGGGAAGGCGGCATATCATGGGGGTGCTTGCCGCCTCCACTTCTCCACCGAAGGAGCGATATGCCG
TGTCCAAAGATAACGTCATCGAGCTGATTCATCCAGGAAACGTCGACGATCAACTCACGGAAATCTTTCGCGATGGGGCGCGTGCTCTGTTGGCGCAGGC
GGTCGAGGCCGAGGTCACGGACTTTCTCGGCAAGCATGCCGATTTGAAGACTGCGGACGGCCACCAGCGCGTCGTGCGCCATGGTCACCTGCCGGAACGC
GAGGTGATGACCGGCATCGGTCCAGTTGCCGTACGCCAGCCGCGTGTACGCGATCGCGAGGCGGATGCTGCCAACCCCGACCGCATCCGGTTCTCTCCGT
CGATCCTGCCGCCCTACATGCGCCGCTCGAAATCGATCGAGACGCTGCTGCCGATCCTTTACCTGAAGGGTATCTCTACCGGCGACTTCTCCGAGGTTCT
GGCGGCGCTGCTCGGCAAGGATGCTGCCGGGCTGTCGGCATCCGCCATCGGCCGGCTGAAGGACGGTTGGCTTGATGAACACACCGCGTGGCAGAGGCGC
GATCTGTCGGCGAAGCGCTACGTCTATATCTGGGCCGATGGCATCCATCTCCAGGCGCGCCTCGAAGACGAAAAGCAGTGCATCCTGGTGCTGATCGGCG
CGACGCCGGAAGGCCGCAAGGAACTGGTCGGCTTCACCGATGGCGCCCGCGAGAGCGCGCAAGACTGGCGCGATCTGCTGCTTGACCTGAAGCGGCGCGG
GCTCGACGTGCCGCCGCAGCTTGCCATCGCCGATGGCGCGCTCGGGTTCTGGAAGGCCGCGGGTGAGGTCTGGCCGAAAACGCGCGAGCAGCGCTGCTGG
GTGCACAAGACCGCGAACGTGCTCGCCAAGTTGCCGAAGAGCCAGCAGCCGAAAGCCAAACGCGCGTTGCAGGAGATCTGGATGGCTGAAACCAAGGTCG
CCGCCAAGTTGGCGTTCGACGCCTTCATCGAGAGCTACACGCCCAAATACGCGAAGGCGGCCGACTGCCTGAGCAAGGATCGAGACACGCTACTAGCGTT
CTACGACTTCCCGGCCGAGCATTGGAAACATCTGCGGACGACCAATCCCATTGAAAGCACCTTCGCTACCGTGCGCCACCGCACGATCCGATCGAAGGGT
TGCCTGTCCAACAGGACGGCGCTCGCAATGGTTTTCAAGCTGCTTGAGGCCGCGCAGAAAAGCTGGCGTCGTCTCGATGGTCACAACCAGTTGTCAAAAC
TCGTCCTCGGTGTGACATTCAACGACGGGATCGAGGTCATCGCCAAACCGACTGACCGTCAGTCCTCAACCGCCGCCGCCTGATCGGCCCGGCCGTCACC
AAAAATTGGCGATAGCTC
TGTCCAAAGATAACGTCATCGAGCTGATTCATCCAGGAAACGTCGACGATCAACTCACGGAAATCTTTCGCGATGGGGCGCGTGCTCTGTTGGCGCAGGC
GGTCGAGGCCGAGGTCACGGACTTTCTCGGCAAGCATGCCGATTTGAAGACTGCGGACGGCCACCAGCGCGTCGTGCGCCATGGTCACCTGCCGGAACGC
GAGGTGATGACCGGCATCGGTCCAGTTGCCGTACGCCAGCCGCGTGTACGCGATCGCGAGGCGGATGCTGCCAACCCCGACCGCATCCGGTTCTCTCCGT
CGATCCTGCCGCCCTACATGCGCCGCTCGAAATCGATCGAGACGCTGCTGCCGATCCTTTACCTGAAGGGTATCTCTACCGGCGACTTCTCCGAGGTTCT
GGCGGCGCTGCTCGGCAAGGATGCTGCCGGGCTGTCGGCATCCGCCATCGGCCGGCTGAAGGACGGTTGGCTTGATGAACACACCGCGTGGCAGAGGCGC
GATCTGTCGGCGAAGCGCTACGTCTATATCTGGGCCGATGGCATCCATCTCCAGGCGCGCCTCGAAGACGAAAAGCAGTGCATCCTGGTGCTGATCGGCG
CGACGCCGGAAGGCCGCAAGGAACTGGTCGGCTTCACCGATGGCGCCCGCGAGAGCGCGCAAGACTGGCGCGATCTGCTGCTTGACCTGAAGCGGCGCGG
GCTCGACGTGCCGCCGCAGCTTGCCATCGCCGATGGCGCGCTCGGGTTCTGGAAGGCCGCGGGTGAGGTCTGGCCGAAAACGCGCGAGCAGCGCTGCTGG
GTGCACAAGACCGCGAACGTGCTCGCCAAGTTGCCGAAGAGCCAGCAGCCGAAAGCCAAACGCGCGTTGCAGGAGATCTGGATGGCTGAAACCAAGGTCG
CCGCCAAGTTGGCGTTCGACGCCTTCATCGAGAGCTACACGCCCAAATACGCGAAGGCGGCCGACTGCCTGAGCAAGGATCGAGACACGCTACTAGCGTT
CTACGACTTCCCGGCCGAGCATTGGAAACATCTGCGGACGACCAATCCCATTGAAAGCACCTTCGCTACCGTGCGCCACCGCACGATCCGATCGAAGGGT
TGCCTGTCCAACAGGACGGCGCTCGCAATGGTTTTCAAGCTGCTTGAGGCCGCGCAGAAAAGCTGGCGTCGTCTCGATGGTCACAACCAGTTGTCAAAAC
TCGTCCTCGGTGTGACATTCAACGACGGGATCGAGGTCATCGCCAAACCGACTGACCGTCAGTCCTCAACCGCCGCCGCCTGATCGGCCCGGCCGTCACC
AAAAATTGGCGATAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1332 bp | 443 aa | 51 | 1382 | + | No |
Chemistry : DDE
ORF sequence :
MGVLAASTSPPKERYAVSKDNVIELIHPGNVDDQLTEIFRDGARALLAQAVEAEVTDFLGKHADLKTADGHQRVVRHGHLPEREVMTGIGPVAVRQPRVR
DREADAANPDRIRFSPSILPPYMRRSKSIETLLPILYLKGISTGDFSEVLAALLGKDAAGLSASAIGRLKDGWLDEHTAWQRRDLSAKRYVYIWADGIHL
QARLEDEKQCILVLIGATPEGRKELVGFTDGARESAQDWRDLLLDLKRRGLDVPPQLAIADGALGFWKAAGEVWPKTREQRCWVHKTANVLAKLPKSQQP
KAKRALQEIWMAETKVAAKLAFDAFIESYTPKYAKAADCLSKDRDTLLAFYDFPAEHWKHLRTTNPIESTFATVRHRTIRSKGCLSNRTALAMVFKLLEA
AQKSWRRLDGHNQLSKLVLGVTFNDGIEVIAKPTDRQSSTAAA
DREADAANPDRIRFSPSILPPYMRRSKSIETLLPILYLKGISTGDFSEVLAALLGKDAAGLSASAIGRLKDGWLDEHTAWQRRDLSAKRYVYIWADGIHL
QARLEDEKQCILVLIGATPEGRKELVGFTDGARESAQDWRDLLLDLKRRGLDVPPQLAIADGALGFWKAAGEVWPKTREQRCWVHKTANVLAKLPKSQQP
KAKRALQEIWMAETKVAAKLAFDAFIESYTPKYAKAADCLSKDRDTLLAFYDFPAEHWKHLRTTNPIESTFATVRHRTIRSKGCLSNRTALAMVFKLLEA
AQKSWRRLDGHNQLSKLVLGVTFNDGIEVIAKPTDRQSSTAAA
Blast result :
Comments
ISNisp4 is 96% aa similar to ISMdi13.
References
1] ISfinder annotation (2013)
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.