ISNisp4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMY01000004 ND Nitrobacter sp.
Nitrobacter sp. Nb-311A
DNA section
IS Length : 1417 bp

Ends


IR Length : 19/24

IRL : GGAGCTATCGCTGAAAGTTGGTGACATCGGGCCTTGGGAAGGCGGCATAT
IRR : GAGCTATCGCCAATTTTTGGTGACGGCCGGGCCGATCAGGCGGCGGCGGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACCACAAGGTAAATCGATGACCCTGCGAC9

DNA sequence

GGAGCTATCGCTGAAAGTTGGTGACATCGGGCCTTGGGAAGGCGGCATATCATGGGGGTGCTTGCCGCCTCCACTTCTCCACCGAAGGAGCGATATGCCG
TGTCCAAAGATAACGTCATCGAGCTGATTCATCCAGGAAACGTCGACGATCAACTCACGGAAATCTTTCGCGATGGGGCGCGTGCTCTGTTGGCGCAGGC
GGTCGAGGCCGAGGTCACGGACTTTCTCGGCAAGCATGCCGATTTGAAGACTGCGGACGGCCACCAGCGCGTCGTGCGCCATGGTCACCTGCCGGAACGC
GAGGTGATGACCGGCATCGGTCCAGTTGCCGTACGCCAGCCGCGTGTACGCGATCGCGAGGCGGATGCTGCCAACCCCGACCGCATCCGGTTCTCTCCGT
CGATCCTGCCGCCCTACATGCGCCGCTCGAAATCGATCGAGACGCTGCTGCCGATCCTTTACCTGAAGGGTATCTCTACCGGCGACTTCTCCGAGGTTCT
GGCGGCGCTGCTCGGCAAGGATGCTGCCGGGCTGTCGGCATCCGCCATCGGCCGGCTGAAGGACGGTTGGCTTGATGAACACACCGCGTGGCAGAGGCGC
GATCTGTCGGCGAAGCGCTACGTCTATATCTGGGCCGATGGCATCCATCTCCAGGCGCGCCTCGAAGACGAAAAGCAGTGCATCCTGGTGCTGATCGGCG
CGACGCCGGAAGGCCGCAAGGAACTGGTCGGCTTCACCGATGGCGCCCGCGAGAGCGCGCAAGACTGGCGCGATCTGCTGCTTGACCTGAAGCGGCGCGG
GCTCGACGTGCCGCCGCAGCTTGCCATCGCCGATGGCGCGCTCGGGTTCTGGAAGGCCGCGGGTGAGGTCTGGCCGAAAACGCGCGAGCAGCGCTGCTGG
GTGCACAAGACCGCGAACGTGCTCGCCAAGTTGCCGAAGAGCCAGCAGCCGAAAGCCAAACGCGCGTTGCAGGAGATCTGGATGGCTGAAACCAAGGTCG
CCGCCAAGTTGGCGTTCGACGCCTTCATCGAGAGCTACACGCCCAAATACGCGAAGGCGGCCGACTGCCTGAGCAAGGATCGAGACACGCTACTAGCGTT
CTACGACTTCCCGGCCGAGCATTGGAAACATCTGCGGACGACCAATCCCATTGAAAGCACCTTCGCTACCGTGCGCCACCGCACGATCCGATCGAAGGGT
TGCCTGTCCAACAGGACGGCGCTCGCAATGGTTTTCAAGCTGCTTGAGGCCGCGCAGAAAAGCTGGCGTCGTCTCGATGGTCACAACCAGTTGTCAAAAC
TCGTCCTCGGTGTGACATTCAACGACGGGATCGAGGTCATCGCCAAACCGACTGACCGTCAGTCCTCAACCGCCGCCGCCTGATCGGCCCGGCCGTCACC
AAAAATTGGCGATAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1332 bp443 aa511382+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGVLAASTSPPKERYAVSKDNVIELIHPGNVDDQLTEIFRDGARALLAQAVEAEVTDFLGKHADLKTADGHQRVVRHGHLPEREVMTGIGPVAVRQPRVR
DREADAANPDRIRFSPSILPPYMRRSKSIETLLPILYLKGISTGDFSEVLAALLGKDAAGLSASAIGRLKDGWLDEHTAWQRRDLSAKRYVYIWADGIHL
QARLEDEKQCILVLIGATPEGRKELVGFTDGARESAQDWRDLLLDLKRRGLDVPPQLAIADGALGFWKAAGEVWPKTREQRCWVHKTANVLAKLPKSQQP
KAKRALQEIWMAETKVAAKLAFDAFIESYTPKYAKAADCLSKDRDTLLAFYDFPAEHWKHLRTTNPIESTFATVRHRTIRSKGCLSNRTALAMVFKLLEA
AQKSWRRLDGHNQLSKLVLGVTFNDGIEVIAKPTDRQSSTAAA

 

Blast result :
Comments
ISNisp4 is 96% aa similar to ISMdi13.
References
1] ISfinder annotation (2013)
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.