ISRba10
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AFAR01000144 | ND | Rhodopirellula baltica | Rhodopirellula baltica WH47 |
DNA section
IS Length : 1449 bp
Ends
IR Length : 28/41
IRL : GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGC
IRR : GGAGATGTCCGATTCGTTGTTGAAACTCTTGATGGTCTCTCTGGTAAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCAGATCGGA | GTTTTTGG | AGCTGGCAGA | 8 |
DNA sequence
GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGCAGAATCTGCCCTTCGCAACTTTCCAATTTTCGTCGGCGGCAACCGACGGG
GAGACCATCATGAATGAAGCTAATCTTTTGGAATCACTGGGGCAAGTTTCGGCAGCTGAAACCGGACAAGTCTTTCGCGACTTCTTGCGGGGGCACGTGC
GAGAGATGATCTGTGAAGTCATGGCCGCAGAGGTGACGCAGCTTTGTGGACCCAAGCACGCCCCATCACCGAGCGATCACTATCGCGCCGGCTCGAGTCC
TGGCCGTGTGCTTTACGAGGGCGAGCGTGAAGACGTCGTTCGGCCTCGAGTGCGTCAGAAGTCCAGTGACGGTTCCAGTCATGAAGTCGATCTGGCTACC
TACCGTGTTGCCAAAGATCCCGGGCTGCTGCAGGCACAGATCGTTCAAGCGATTGTCTCTGGCGTCAGTGCCCGAGGCGTCAAAGAAATCAAGCCAAATT
CTCCTGGTGTCAAAAAAACCAACGTTTCCCGTCTTTGGCAGGAGGCTGGCAGCAAGTTCATCGAACAGTTGCGAGGCAAAGATCTCAGCACAATCACGTG
GTGCGCGTTGATGCTCGATGGCATTCGTTTGAGTAAAGATCAGACGGCGGTGGTGGCACTGGGGATCGACAGTGAAGGACGCAAACATGTCCTGGACTTT
GCACTCGGCAGTAGCGAAAACCTGGAAGCTTCGCGTGAACTGATGAGTCGTATCGTCAACCGCGGATTCAATTGCGACCACCGTTTGTACGTGGTTCTCG
ACGGCAGCGATGCGCTTCGCTCAGCGGTGGCTGAGTTCTTCGCTGATGCGGTCATCCAGCGTTGTTTGGTGCACAAGGAACGAAACATCAAAGGCAAGCT
CTCAAAGCGTCACTGGGGTGAGCTGTCGCGTCTGTTCACACGCCTTCGAAATGTTCAAGGAATCAAAGCTGCGGAAGAGGTCTTTGACGAGCTCAAGGAG
TTCCTGAAACCGATCAATGCCGAGGCGTATCGGAGTCTGCACGAAGCTGGTGACGACCTGTTGGCGCTGCATCGTCTCAATGTTCCCAGCACGCTGCATC
GTTCACTGTTAAGTACCAACGCGATCGAGAACTCGTTCTTGAACACTCGACGCAAGCTTGGCCGTGTGACGCGATTTCGGGCCGAGACCGATCAAGCCAG
TCGTTGGCTTTCTTATGCGTTGCTGGAAGCTGAGAAAGGCTTCCGCAAGATCTCCGGCCACGCTTCGACTGGGCTGCTGATCGCGGCCCTGGCACGCCGA
GAACCCGACCCTGAGTAATCGCCATCGCCCGTCCTGACTTCGCCGTAGGCGAAGTCAGGACGGGCGAGCTTATTGCAAAGCCAAACCCACTCACCTACGT
TTTTACCAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCTCC
GAGACCATCATGAATGAAGCTAATCTTTTGGAATCACTGGGGCAAGTTTCGGCAGCTGAAACCGGACAAGTCTTTCGCGACTTCTTGCGGGGGCACGTGC
GAGAGATGATCTGTGAAGTCATGGCCGCAGAGGTGACGCAGCTTTGTGGACCCAAGCACGCCCCATCACCGAGCGATCACTATCGCGCCGGCTCGAGTCC
TGGCCGTGTGCTTTACGAGGGCGAGCGTGAAGACGTCGTTCGGCCTCGAGTGCGTCAGAAGTCCAGTGACGGTTCCAGTCATGAAGTCGATCTGGCTACC
TACCGTGTTGCCAAAGATCCCGGGCTGCTGCAGGCACAGATCGTTCAAGCGATTGTCTCTGGCGTCAGTGCCCGAGGCGTCAAAGAAATCAAGCCAAATT
CTCCTGGTGTCAAAAAAACCAACGTTTCCCGTCTTTGGCAGGAGGCTGGCAGCAAGTTCATCGAACAGTTGCGAGGCAAAGATCTCAGCACAATCACGTG
GTGCGCGTTGATGCTCGATGGCATTCGTTTGAGTAAAGATCAGACGGCGGTGGTGGCACTGGGGATCGACAGTGAAGGACGCAAACATGTCCTGGACTTT
GCACTCGGCAGTAGCGAAAACCTGGAAGCTTCGCGTGAACTGATGAGTCGTATCGTCAACCGCGGATTCAATTGCGACCACCGTTTGTACGTGGTTCTCG
ACGGCAGCGATGCGCTTCGCTCAGCGGTGGCTGAGTTCTTCGCTGATGCGGTCATCCAGCGTTGTTTGGTGCACAAGGAACGAAACATCAAAGGCAAGCT
CTCAAAGCGTCACTGGGGTGAGCTGTCGCGTCTGTTCACACGCCTTCGAAATGTTCAAGGAATCAAAGCTGCGGAAGAGGTCTTTGACGAGCTCAAGGAG
TTCCTGAAACCGATCAATGCCGAGGCGTATCGGAGTCTGCACGAAGCTGGTGACGACCTGTTGGCGCTGCATCGTCTCAATGTTCCCAGCACGCTGCATC
GTTCACTGTTAAGTACCAACGCGATCGAGAACTCGTTCTTGAACACTCGACGCAAGCTTGGCCGTGTGACGCGATTTCGGGCCGAGACCGATCAAGCCAG
TCGTTGGCTTTCTTATGCGTTGCTGGAAGCTGAGAAAGGCTTCCGCAAGATCTCCGGCCACGCTTCGACTGGGCTGCTGATCGCGGCCCTGGCACGCCGA
GAACCCGACCCTGAGTAATCGCCATCGCCCGTCCTGACTTCGCCGTAGGCGAAGTCAGGACGGGCGAGCTTATTGCAAAGCCAAACCCACTCACCTACGT
TTTTACCAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 17 | 1318 | + | No |
Chemistry : DDE
ORF sequence :
MLKVERWSPEGQNLPFATFQFSSAATDGETIMNEANLLESLGQVSAAETGQVFRDFLRGHVREMICEVMAAEVTQLCGPKHAPSPSDHYRAGSSPGRVLY
EGEREDVVRPRVRQKSSDGSSHEVDLATYRVAKDPGLLQAQIVQAIVSGVSARGVKEIKPNSPGVKKTNVSRLWQEAGSKFIEQLRGKDLSTITWCALML
DGIRLSKDQTAVVALGIDSEGRKHVLDFALGSSENLEASRELMSRIVNRGFNCDHRLYVVLDGSDALRSAVAEFFADAVIQRCLVHKERNIKGKLSKRHW
GELSRLFTRLRNVQGIKAAEEVFDELKEFLKPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQASRWLSY
ALLEAEKGFRKISGHASTGLLIAALARREPDPE
EGEREDVVRPRVRQKSSDGSSHEVDLATYRVAKDPGLLQAQIVQAIVSGVSARGVKEIKPNSPGVKKTNVSRLWQEAGSKFIEQLRGKDLSTITWCALML
DGIRLSKDQTAVVALGIDSEGRKHVLDFALGSSENLEASRELMSRIVNRGFNCDHRLYVVLDGSDALRSAVAEFFADAVIQRCLVHKERNIKGKLSKRHW
GELSRLFTRLRNVQGIKAAEEVFDELKEFLKPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQASRWLSY
ALLEAEKGFRKISGHASTGLLIAALARREPDPE
Blast result :
Comments
ISRba10 is 50% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Richter,M., Richter-Heitmann,T., Frank,C., Harder,J. and Gloeckner,F.O. (2011) Direct submission GenBank.
2] Richter,M., Richter-Heitmann,T., Frank,C., Harder,J. and Gloeckner,F.O. (2011) Direct submission GenBank.