ISRba10

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AFAR01000144 ND Rhodopirellula baltica
Rhodopirellula baltica WH47
DNA section
IS Length : 1449 bp

Ends


IR Length : 28/41

IRL : GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGC
IRR : GGAGATGTCCGATTCGTTGTTGAAACTCTTGATGGTCTCTCTGGTAAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
GACCAGATCGGAGTTTTTGGAGCTGGCAGA8

DNA sequence

GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGCAGAATCTGCCCTTCGCAACTTTCCAATTTTCGTCGGCGGCAACCGACGGG
GAGACCATCATGAATGAAGCTAATCTTTTGGAATCACTGGGGCAAGTTTCGGCAGCTGAAACCGGACAAGTCTTTCGCGACTTCTTGCGGGGGCACGTGC
GAGAGATGATCTGTGAAGTCATGGCCGCAGAGGTGACGCAGCTTTGTGGACCCAAGCACGCCCCATCACCGAGCGATCACTATCGCGCCGGCTCGAGTCC
TGGCCGTGTGCTTTACGAGGGCGAGCGTGAAGACGTCGTTCGGCCTCGAGTGCGTCAGAAGTCCAGTGACGGTTCCAGTCATGAAGTCGATCTGGCTACC
TACCGTGTTGCCAAAGATCCCGGGCTGCTGCAGGCACAGATCGTTCAAGCGATTGTCTCTGGCGTCAGTGCCCGAGGCGTCAAAGAAATCAAGCCAAATT
CTCCTGGTGTCAAAAAAACCAACGTTTCCCGTCTTTGGCAGGAGGCTGGCAGCAAGTTCATCGAACAGTTGCGAGGCAAAGATCTCAGCACAATCACGTG
GTGCGCGTTGATGCTCGATGGCATTCGTTTGAGTAAAGATCAGACGGCGGTGGTGGCACTGGGGATCGACAGTGAAGGACGCAAACATGTCCTGGACTTT
GCACTCGGCAGTAGCGAAAACCTGGAAGCTTCGCGTGAACTGATGAGTCGTATCGTCAACCGCGGATTCAATTGCGACCACCGTTTGTACGTGGTTCTCG
ACGGCAGCGATGCGCTTCGCTCAGCGGTGGCTGAGTTCTTCGCTGATGCGGTCATCCAGCGTTGTTTGGTGCACAAGGAACGAAACATCAAAGGCAAGCT
CTCAAAGCGTCACTGGGGTGAGCTGTCGCGTCTGTTCACACGCCTTCGAAATGTTCAAGGAATCAAAGCTGCGGAAGAGGTCTTTGACGAGCTCAAGGAG
TTCCTGAAACCGATCAATGCCGAGGCGTATCGGAGTCTGCACGAAGCTGGTGACGACCTGTTGGCGCTGCATCGTCTCAATGTTCCCAGCACGCTGCATC
GTTCACTGTTAAGTACCAACGCGATCGAGAACTCGTTCTTGAACACTCGACGCAAGCTTGGCCGTGTGACGCGATTTCGGGCCGAGACCGATCAAGCCAG
TCGTTGGCTTTCTTATGCGTTGCTGGAAGCTGAGAAAGGCTTCCGCAAGATCTCCGGCCACGCTTCGACTGGGCTGCTGATCGCGGCCCTGGCACGCCGA
GAACCCGACCCTGAGTAATCGCCATCGCCCGTCCTGACTTCGCCGTAGGCGAAGTCAGGACGGGCGAGCTTATTGCAAAGCCAAACCCACTCACCTACGT
TTTTACCAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa171318+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKVERWSPEGQNLPFATFQFSSAATDGETIMNEANLLESLGQVSAAETGQVFRDFLRGHVREMICEVMAAEVTQLCGPKHAPSPSDHYRAGSSPGRVLY
EGEREDVVRPRVRQKSSDGSSHEVDLATYRVAKDPGLLQAQIVQAIVSGVSARGVKEIKPNSPGVKKTNVSRLWQEAGSKFIEQLRGKDLSTITWCALML
DGIRLSKDQTAVVALGIDSEGRKHVLDFALGSSENLEASRELMSRIVNRGFNCDHRLYVVLDGSDALRSAVAEFFADAVIQRCLVHKERNIKGKLSKRHW
GELSRLFTRLRNVQGIKAAEEVFDELKEFLKPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQASRWLSY
ALLEAEKGFRKISGHASTGLLIAALARREPDPE

 

Blast result :
Comments
ISRba10 is 50% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Richter,M., Richter-Heitmann,T., Frank,C., Harder,J. and Gloeckner,F.O. (2011) Direct submission GenBank.