ISRba9
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005027 | ND | Rhodopirellula baltica | Rhodopirellula baltica SH 1 |
DNA section
IS Length : 1450 bp
Ends
IR Length : 27/41
IRL : GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGC
IRR : GGGGATGTCCGATTCGTTGTTGAAACTCTTGATGGTCTCTCTAGTGAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCACCACCG | AATCGGAC | TCTGGCGAAT | 8 |
DNA sequence
GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGCAGAATCTGCCCTTCGCAACTTTTCAATTTTCGTCGGCTGCAACCGACGGG
GAGACCATCATGATTGAAGCTAATCTTTTGGAATCGCTCGGGCAAGTTTCGGCCTCTGAAACCGGTCAAGTCTTCCGCGACTTTCTGCGAGGGCATGTGC
GCGAGATGATCTGTGAGGTCATGGCCGCCGAGGTGACGCAGCTTTGCGGGCCCAAGCACGATCCATCACCAAGCGAACACTACCGCGCCGGCTCGAGTTC
AGGCCGTGTGCTTTACGAGGGTGAGCGCGAAGACGTCGTCCGGCCTCGAGTGCGTCAGAAGTCGGGTGACGGTTCTAGTCGTGAAGTCGAGCTAGCCACC
TACCGTGTCACCAAAGATCCCCAGCAGTTGCAGGAACAGATCGTCCAAGCGATCGTCTCGGGCGTGAGTGCTCGTGGGGTTGAAGAGATCAAACCAAATT
CACCCGGCGTTAAAAAGTCCAATGTTTCGCGTCTATGGCAGGAAGCCGGAAGCAAATTCGTGGAGCAGTTGCGAGACAAGAATCTCCGCTCAGTCATGTG
GTGCGCGTTGATGCTTGACGGCGTTCGTTTGAGCAAGGATCAGACGGCCGTGGTGGCACTTGGAATCGACAGCGAAGGCCGCAAACATGTCTTGGATTTC
GCGTTGGGTAGCAGCGAAAGCCTTGAGGTTTCGCGTGAACTGATGAGCCGAATCGTGCGGCGCGGGTTCACTTGTGAGCATCGATTGTTCGTGGTTCTCG
ATGGCAGTGATGCGCTTCGCGGTGCGGTGGTTGAGTTTTTTGCTGATGCGGTCATTCAACGTTGCCTGGTCCACAAGGAACGAAACATCAAAGGAAAACT
CTCCAAGCGTCATTGGGGTGAAATGTCGCGTCTGTTCACGCGTCTTCGCAGCGTCCAGGGGATCGAAGCTGCCGAGGAAGTCTTCGGCGATTTGAGAGCG
TTCCTGGAACCGATCAATGCCGAAGCATATCGGAGTCTGCACGAAGCCGGTGACGACCTGTTGGCGTTGCATCGTTTGAACGTCCCCAGCACGCTTCATC
GATCGCTGCTGAGCACCAACGCGATCGAGAACTCGTTCTTGAACACACGTCGCAAGCTTGGCCGCGTGACGCGATTTCGTGCTGAGACCGATCAAGCAAC
TCGCTGGCTTTCGTATGCGTTGCTGGAGGCCGAGAAAGGCTTCCGCCGGATCTCAGGCCACTCGTTCTTGCCCACACTGATCGCGGCCCTCGCACGACCA
TCAGCCAATCCCGAATAGACCGTTTTCGCTCCTCCTGACTTCGCCTACGGCGAAGTCAGGAGGAGCGAGCCTGTTGCAAGCTCAAACTCAACCACCTACG
TTTTCACTAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCCCC
GAGACCATCATGATTGAAGCTAATCTTTTGGAATCGCTCGGGCAAGTTTCGGCCTCTGAAACCGGTCAAGTCTTCCGCGACTTTCTGCGAGGGCATGTGC
GCGAGATGATCTGTGAGGTCATGGCCGCCGAGGTGACGCAGCTTTGCGGGCCCAAGCACGATCCATCACCAAGCGAACACTACCGCGCCGGCTCGAGTTC
AGGCCGTGTGCTTTACGAGGGTGAGCGCGAAGACGTCGTCCGGCCTCGAGTGCGTCAGAAGTCGGGTGACGGTTCTAGTCGTGAAGTCGAGCTAGCCACC
TACCGTGTCACCAAAGATCCCCAGCAGTTGCAGGAACAGATCGTCCAAGCGATCGTCTCGGGCGTGAGTGCTCGTGGGGTTGAAGAGATCAAACCAAATT
CACCCGGCGTTAAAAAGTCCAATGTTTCGCGTCTATGGCAGGAAGCCGGAAGCAAATTCGTGGAGCAGTTGCGAGACAAGAATCTCCGCTCAGTCATGTG
GTGCGCGTTGATGCTTGACGGCGTTCGTTTGAGCAAGGATCAGACGGCCGTGGTGGCACTTGGAATCGACAGCGAAGGCCGCAAACATGTCTTGGATTTC
GCGTTGGGTAGCAGCGAAAGCCTTGAGGTTTCGCGTGAACTGATGAGCCGAATCGTGCGGCGCGGGTTCACTTGTGAGCATCGATTGTTCGTGGTTCTCG
ATGGCAGTGATGCGCTTCGCGGTGCGGTGGTTGAGTTTTTTGCTGATGCGGTCATTCAACGTTGCCTGGTCCACAAGGAACGAAACATCAAAGGAAAACT
CTCCAAGCGTCATTGGGGTGAAATGTCGCGTCTGTTCACGCGTCTTCGCAGCGTCCAGGGGATCGAAGCTGCCGAGGAAGTCTTCGGCGATTTGAGAGCG
TTCCTGGAACCGATCAATGCCGAAGCATATCGGAGTCTGCACGAAGCCGGTGACGACCTGTTGGCGTTGCATCGTTTGAACGTCCCCAGCACGCTTCATC
GATCGCTGCTGAGCACCAACGCGATCGAGAACTCGTTCTTGAACACACGTCGCAAGCTTGGCCGCGTGACGCGATTTCGTGCTGAGACCGATCAAGCAAC
TCGCTGGCTTTCGTATGCGTTGCTGGAGGCCGAGAAAGGCTTCCGCCGGATCTCAGGCCACTCGTTCTTGCCCACACTGATCGCGGCCCTCGCACGACCA
TCAGCCAATCCCGAATAGACCGTTTTCGCTCCTCCTGACTTCGCCTACGGCGAAGTCAGGAGGAGCGAGCCTGTTGCAAGCTCAAACTCAACCACCTACG
TTTTCACTAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 17 | 1318 | + | No |
Chemistry : DDE
ORF sequence :
MLKVERWSPEGQNLPFATFQFSSAATDGETIMIEANLLESLGQVSASETGQVFRDFLRGHVREMICEVMAAEVTQLCGPKHDPSPSEHYRAGSSSGRVLY
EGEREDVVRPRVRQKSGDGSSREVELATYRVTKDPQQLQEQIVQAIVSGVSARGVEEIKPNSPGVKKSNVSRLWQEAGSKFVEQLRDKNLRSVMWCALML
DGVRLSKDQTAVVALGIDSEGRKHVLDFALGSSESLEVSRELMSRIVRRGFTCEHRLFVVLDGSDALRGAVVEFFADAVIQRCLVHKERNIKGKLSKRHW
GEMSRLFTRLRSVQGIEAAEEVFGDLRAFLEPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQATRWLSY
ALLEAEKGFRRISGHSFLPTLIAALARPSANPE
EGEREDVVRPRVRQKSGDGSSREVELATYRVTKDPQQLQEQIVQAIVSGVSARGVEEIKPNSPGVKKSNVSRLWQEAGSKFVEQLRDKNLRSVMWCALML
DGVRLSKDQTAVVALGIDSEGRKHVLDFALGSSESLEVSRELMSRIVRRGFTCEHRLFVVLDGSDALRGAVVEFFADAVIQRCLVHKERNIKGKLSKRHW
GEMSRLFTRLRSVQGIEAAEEVFGDLRAFLEPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQATRWLSY
ALLEAEKGFRRISGHSFLPTLIAALARPSANPE
Blast result :
Comments
ISRba9 is 50% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Wecker,P., Klockow,C., Ellrott,A., Quast,C., Langhammer,P., Harder,J. and Glockner,F.O. (2009) BMC Genomics 10, 410.
3] Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303.
2] Wecker,P., Klockow,C., Ellrott,A., Quast,C., Langhammer,P., Harder,J. and Glockner,F.O. (2009) BMC Genomics 10, 410.
3] Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303.