ISRba9

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005027 ND Rhodopirellula baltica
Rhodopirellula baltica SH 1
DNA section
IS Length : 1450 bp

Ends


IR Length : 27/41

IRL : GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGC
IRR : GGGGATGTCCGATTCGTTGTTGAAACTCTTGATGGTCTCTCTAGTGAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
CCCACCACCGAATCGGACTCTGGCGAAT8

DNA sequence

GGAAGCGTCCCAATAATTGTTGAAAGTTGAAAGATGGTCTCCCGAGGGGCAGAATCTGCCCTTCGCAACTTTTCAATTTTCGTCGGCTGCAACCGACGGG
GAGACCATCATGATTGAAGCTAATCTTTTGGAATCGCTCGGGCAAGTTTCGGCCTCTGAAACCGGTCAAGTCTTCCGCGACTTTCTGCGAGGGCATGTGC
GCGAGATGATCTGTGAGGTCATGGCCGCCGAGGTGACGCAGCTTTGCGGGCCCAAGCACGATCCATCACCAAGCGAACACTACCGCGCCGGCTCGAGTTC
AGGCCGTGTGCTTTACGAGGGTGAGCGCGAAGACGTCGTCCGGCCTCGAGTGCGTCAGAAGTCGGGTGACGGTTCTAGTCGTGAAGTCGAGCTAGCCACC
TACCGTGTCACCAAAGATCCCCAGCAGTTGCAGGAACAGATCGTCCAAGCGATCGTCTCGGGCGTGAGTGCTCGTGGGGTTGAAGAGATCAAACCAAATT
CACCCGGCGTTAAAAAGTCCAATGTTTCGCGTCTATGGCAGGAAGCCGGAAGCAAATTCGTGGAGCAGTTGCGAGACAAGAATCTCCGCTCAGTCATGTG
GTGCGCGTTGATGCTTGACGGCGTTCGTTTGAGCAAGGATCAGACGGCCGTGGTGGCACTTGGAATCGACAGCGAAGGCCGCAAACATGTCTTGGATTTC
GCGTTGGGTAGCAGCGAAAGCCTTGAGGTTTCGCGTGAACTGATGAGCCGAATCGTGCGGCGCGGGTTCACTTGTGAGCATCGATTGTTCGTGGTTCTCG
ATGGCAGTGATGCGCTTCGCGGTGCGGTGGTTGAGTTTTTTGCTGATGCGGTCATTCAACGTTGCCTGGTCCACAAGGAACGAAACATCAAAGGAAAACT
CTCCAAGCGTCATTGGGGTGAAATGTCGCGTCTGTTCACGCGTCTTCGCAGCGTCCAGGGGATCGAAGCTGCCGAGGAAGTCTTCGGCGATTTGAGAGCG
TTCCTGGAACCGATCAATGCCGAAGCATATCGGAGTCTGCACGAAGCCGGTGACGACCTGTTGGCGTTGCATCGTTTGAACGTCCCCAGCACGCTTCATC
GATCGCTGCTGAGCACCAACGCGATCGAGAACTCGTTCTTGAACACACGTCGCAAGCTTGGCCGCGTGACGCGATTTCGTGCTGAGACCGATCAAGCAAC
TCGCTGGCTTTCGTATGCGTTGCTGGAGGCCGAGAAAGGCTTCCGCCGGATCTCAGGCCACTCGTTCTTGCCCACACTGATCGCGGCCCTCGCACGACCA
TCAGCCAATCCCGAATAGACCGTTTTCGCTCCTCCTGACTTCGCCTACGGCGAAGTCAGGAGGAGCGAGCCTGTTGCAAGCTCAAACTCAACCACCTACG
TTTTCACTAGAGAGACCATCAAGAGTTTCAACAACGAATCGGACATCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa171318+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKVERWSPEGQNLPFATFQFSSAATDGETIMIEANLLESLGQVSASETGQVFRDFLRGHVREMICEVMAAEVTQLCGPKHDPSPSEHYRAGSSSGRVLY
EGEREDVVRPRVRQKSGDGSSREVELATYRVTKDPQQLQEQIVQAIVSGVSARGVEEIKPNSPGVKKSNVSRLWQEAGSKFVEQLRDKNLRSVMWCALML
DGVRLSKDQTAVVALGIDSEGRKHVLDFALGSSESLEVSRELMSRIVRRGFTCEHRLFVVLDGSDALRGAVVEFFADAVIQRCLVHKERNIKGKLSKRHW
GEMSRLFTRLRSVQGIEAAEEVFGDLRAFLEPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQATRWLSY
ALLEAEKGFRRISGHSFLPTLIAALARPSANPE

 

Blast result :
Comments
ISRba9 is 50% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Wecker,P., Klockow,C., Ellrott,A., Quast,C., Langhammer,P., Harder,J. and Glockner,F.O. (2009) BMC Genomics 10, 410.
3] Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. (2003) Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303.