ISLil1
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_JH597773 | ND | Leptonema illini | Leptonema illini DSM 21528 |
DNA section
IS Length : 1378 bp
Ends
IR Length : 23/30
IRL : GATTATGTCCCGAATTTAGTTAGAGTTTGAAAAGGCGGAACCCTGGCCCA
IRR : GACTATGTCCCAGTGATAGTTAGACTTTGAGGCGGGACCCACTGAATGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TACCACCAGT | CTGAAATCT | TCTCATCATG | 9 |
| TACCACCAGT | CTGAAATCT | TCTCATCATG | 9 |
| CCTTTCTGTC | AAGAATTC | ACCGCAACATC | 8 |
| TCAGGTAGAT | TTGGAAAT | CTCTGCATTGC | 8 |
DNA sequence
GATTATGTCCCGAATTTAGTTAGAGTTTGAAAAGGCGGAACCCTGGCCCAAAGTGGGCCGAACACCACATTCCCTTACGGAGGGTTCCAGATGAAGAAGA
ACGAACGGGCAGAAACCAGTCAAACACAAAGCCTTACGGCCGAAGGTTTTCGGGATTATATTCGAACCAGCCTCGATGCTCGAGTGCGCGAATTTGCACT
CGGTTACGTAGGAGCTTTGATTCTCGAAGAAATCGAAACGTTATGCGGCAAGACAGGGGAGCATAAGAGAGGCCGTGGTCTTGCCCATCGAGGCGGCAGC
CAGCGTGGTTCCATTGTGCTCGATGGTGAAAGGGTGGCCATCCAGAGGCCCAGAGCTCGAAGCAATGGCAAGGAAGTGAAGCTGGAGCGATATGAGATCC
TTCAGGATCGCTCTGATCTTCGCGAGCATGTTGAGCGCCTGATGCTGGCAGGCATCAGCACCCGGAACTATGAAAAGACGCTGAGAAAGACAGAAGCCTC
TCTCGGCCTTTCGCGGAGTGCGGTTTCGCGGGAGTTTGTGAAGTCCAGCCGTGAGTCGCTCAATCATTTGAATTCACGCAGGTTTCCTGATCAGACATTC
TGGTGTATTGTTCTTGATGGCATCGTATTCGGCGGCTCTGTCGTAATCGTTGCTCTCGGGGTCGATACGGCCGGAAACAAGCATTTTCTGGGCATTTCTG
AGGGGTCTACAGAGAATGCTGATAGCGCACTCAGTGTCCTTCAATCAATCGAGAGCCGTGATATCCGCTTCACAGATCGTGTGCTTGTCGTCATGGATGG
ATCAAAGGCTCTTGAAAAAGCGGCCAGAGAGTTCTTCGGAAAGAAGGCAGAGATCCAACTCTGCTACCTTCATAAACAGAGAAATGTTCTTGCCAAGCTC
CCACGAAAGTATCATACAGAATTCTGCAAGAGATACAAGCAGGCATTCAGTGCAAACAGTTACGAAGATGTCGCAAGCGAGATGCGGTCCGTTCTATCAT
GGCTCGAATCCATCAGCTACAGTGCCTCCCAGAGCCTTCAGGAGGGCTTAGAGACGCTGTTAACGCTGCATCGCATCAATATGCCGCCGAAGTTGAGAAC
ATCCTTCTACACAACCAATCTGATCGATTCGGCATTTTCGAATCCCAGGTCTCAGCTTAACCGGGTTAAACGGTCAAGGCCGCAGACAGACCAGGTGCTC
CGATGGGTCGGTAGTCTCCTGCTATCACAGGAGGAACAATTCCGTAAGGTGCGGTCATACACTCACATCCATGAGTTCTTAAACACCTTCCTGGATAAAA
AGATTGACGAGCGGATCTCGGCATAGGATGCATTCAGTGGGTCCCGCCTCAAAGTCTAACTATCACTGGGACATAGTC
ACGAACGGGCAGAAACCAGTCAAACACAAAGCCTTACGGCCGAAGGTTTTCGGGATTATATTCGAACCAGCCTCGATGCTCGAGTGCGCGAATTTGCACT
CGGTTACGTAGGAGCTTTGATTCTCGAAGAAATCGAAACGTTATGCGGCAAGACAGGGGAGCATAAGAGAGGCCGTGGTCTTGCCCATCGAGGCGGCAGC
CAGCGTGGTTCCATTGTGCTCGATGGTGAAAGGGTGGCCATCCAGAGGCCCAGAGCTCGAAGCAATGGCAAGGAAGTGAAGCTGGAGCGATATGAGATCC
TTCAGGATCGCTCTGATCTTCGCGAGCATGTTGAGCGCCTGATGCTGGCAGGCATCAGCACCCGGAACTATGAAAAGACGCTGAGAAAGACAGAAGCCTC
TCTCGGCCTTTCGCGGAGTGCGGTTTCGCGGGAGTTTGTGAAGTCCAGCCGTGAGTCGCTCAATCATTTGAATTCACGCAGGTTTCCTGATCAGACATTC
TGGTGTATTGTTCTTGATGGCATCGTATTCGGCGGCTCTGTCGTAATCGTTGCTCTCGGGGTCGATACGGCCGGAAACAAGCATTTTCTGGGCATTTCTG
AGGGGTCTACAGAGAATGCTGATAGCGCACTCAGTGTCCTTCAATCAATCGAGAGCCGTGATATCCGCTTCACAGATCGTGTGCTTGTCGTCATGGATGG
ATCAAAGGCTCTTGAAAAAGCGGCCAGAGAGTTCTTCGGAAAGAAGGCAGAGATCCAACTCTGCTACCTTCATAAACAGAGAAATGTTCTTGCCAAGCTC
CCACGAAAGTATCATACAGAATTCTGCAAGAGATACAAGCAGGCATTCAGTGCAAACAGTTACGAAGATGTCGCAAGCGAGATGCGGTCCGTTCTATCAT
GGCTCGAATCCATCAGCTACAGTGCCTCCCAGAGCCTTCAGGAGGGCTTAGAGACGCTGTTAACGCTGCATCGCATCAATATGCCGCCGAAGTTGAGAAC
ATCCTTCTACACAACCAATCTGATCGATTCGGCATTTTCGAATCCCAGGTCTCAGCTTAACCGGGTTAAACGGTCAAGGCCGCAGACAGACCAGGTGCTC
CGATGGGTCGGTAGTCTCCTGCTATCACAGGAGGAACAATTCCGTAAGGTGCGGTCATACACTCACATCCATGAGTTCTTAAACACCTTCCTGGATAAAA
AGATTGACGAGCGGATCTCGGCATAGGATGCATTCAGTGGGTCCCGCCTCAAAGTCTAACTATCACTGGGACATAGTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1236 bp | 411 aa | 91 | 1326 | + | No |
Chemistry : DDE
ORF sequence :
MKKNERAETSQTQSLTAEGFRDYIRTSLDARVREFALGYVGALILEEIETLCGKTGEHKRGRGLAHRGGSQRGSIVLDGERVAIQRPRARSNGKEVKLER
YEILQDRSDLREHVERLMLAGISTRNYEKTLRKTEASLGLSRSAVSREFVKSSRESLNHLNSRRFPDQTFWCIVLDGIVFGGSVVIVALGVDTAGNKHFL
GISEGSTENADSALSVLQSIESRDIRFTDRVLVVMDGSKALEKAAREFFGKKAEIQLCYLHKQRNVLAKLPRKYHTEFCKRYKQAFSANSYEDVASEMRS
VLSWLESISYSASQSLQEGLETLLTLHRINMPPKLRTSFYTTNLIDSAFSNPRSQLNRVKRSRPQTDQVLRWVGSLLLSQEEQFRKVRSYTHIHEFLNTF
LDKKIDERISA
YEILQDRSDLREHVERLMLAGISTRNYEKTLRKTEASLGLSRSAVSREFVKSSRESLNHLNSRRFPDQTFWCIVLDGIVFGGSVVIVALGVDTAGNKHFL
GISEGSTENADSALSVLQSIESRDIRFTDRVLVVMDGSKALEKAAREFFGKKAEIQLCYLHKQRNVLAKLPRKYHTEFCKRYKQAFSANSYEDVASEMRS
VLSWLESISYSASQSLQEGLETLLTLHRINMPPKLRTSFYTTNLIDSAFSNPRSQLNRVKRSRPQTDQVLRWVGSLLLSQEEQFRKVRSYTHIHEFLNTF
LDKKIDERISA
Blast result :
Comments
ISLil1 is 56% aa similar to IS931.
References
1] ISfinder annotation (2013)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Held,B., Kyrpides,N., Mavromatis,K., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Held,B., Kyrpides,N., Mavromatis,K., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Gronow,S., Wellnitz,S., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.