ISMyo1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_020275 ND Mycobacterium yongonense
Mycobacterium yongonense 05-1390 plasmid pMyong1
DNA section
IS Length : 1472 bp

Ends


IR Length : 33/41

IRL : GAGGTTGTCCCGGTCTTCGTGGAATTTGAGGTGGCGGTCCCTGACCTGAG
IRR : GAGGGTGTCCCGGGTCTCGTGGATTTTCGGTGACGGTCCCATGGTGAACT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGGGCTGGTGCAGGTCGGCGGTCATC8

DNA sequence

GAGGTTGTCCCGGTCTTCGTGGAATTTGAGGTGGCGGTCCCTGACCTGAGGCCTGCCGGATGGTAGGTCTCGGGTGATCCGACCAAAGAACACCCACCAG
GAAAGGGACCGCTTGTGAAGACCGTACCGACTGTTCGTCTGGCTGACACTGCTGATGCGGTGATGTTGCCTGAGCTGCCGGAGGAGATCGCGTTGGCGAT
GTGCGATATCGCCGGTGCGGCTCGGGAGGGGCTGTTGGCGATGAGCGTGGCCGCCGGGCTTGCGGTGATGCAGGCCATGTTCGAGGCCGAGATCAGCGAG
TCCTGCGGGCCGAAGGGCAAGCATGATCCGGACCGCACTGCGGTGCGCCACGGCACTCAGAAGGGCTCGGTCACGTTGGGTGGGCGGCGCATTGCGGTGG
GCCGGCCGCGGGCACGCACCACCGACGGACACGAGGTTCCCCTGATCAGCTACACCCATTTCGCTGCCGATGACCTGCTCACGCAGGTGGTGATGGAGCG
GATGGCCGCCGGGGTGGCCACCCGCCGCCACGCCCGGGTTGCCGAGCCGGTCGGCGCGCAGGTCACCGCCGCGTCGAAAGCAATGTCGAAGTCGGCGATC
TCGCGCCGATTCGTGCGTCAAACCCAGACCGCGTTGGCCGAGCTGATGGCCCGCGACCTGTCCGGTGAGGACATCGCGGTGCTGCTGCTGGATGGGGAGC
ACATGGTCGAGCGGTGCGTGGTAGTGGCGTTGGCCATCACCGCCGACGGGACGAAAAAGCCGGTCGGGCTCTGGGACGGATCGACGGAGAACAAGACCGT
GGTTCGATCGTTGCTGGCCGATCTGGTTGCGCGTGGTCTGCGCTTTGATGATGGGCTGTTGGTGGTCCTCGACGGCGCTAAAGCCCTGGCCTCCGCGGTG
CGTGAGGTCTTCGGCGACAAGGCTGCGGTGCAGCGCTGCACCCTGCATAAGCGGCGCAATGTCGCTGCGCACCTGCCCGCCAAGGACCAGGCCTGGGTGG
ACGCCAAGCTGGTCAAGGCCTTCAACCATCCCGACCCCGCCCAAGGACTGCATAACGCCAAACACCTTGCCGCTCAACTGGACAAGAACCATCCCGGTGC
AGCCGCCTCGCTGCGGGAGGGGCTTGAGGAGATGTTCACCGTGGCCCGCCTCGGTATCGACGGTCGCCTGGCGGTCACCCTGACCACCAGCAACCCGATC
GAGTCGATGCTGTCCATCGCCCGCACGACCAACCGTAACGTCACCCGCTGGCGCGATGGGCAGATGGTGTTGCGCTGGACCGCGGCGGGCATGCTCAATG
CCGAACGATCCTTCCGCCGCGTCAAGGGCTACAAACAGATGCCCCAGCTCATCGCCGCGCTGCACCGCCATGCCCACCCCCAAACCGCTACCGACACAAA
AACAGTCAGTGCCGCCGCCTAGAGTTCACCATGGGACCGTCACCGAAAATCCACGAGACCCGGGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1151422+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTVPTVRLADTADAVMLPELPEEIALAMCDIAGAAREGLLAMSVAAGLAVMQAMFEAEISESCGPKGKHDPDRTAVRHGTQKGSVTLGGRRIAVGRPRA
RTTDGHEVPLISYTHFAADDLLTQVVMERMAAGVATRRHARVAEPVGAQVTAASKAMSKSAISRRFVRQTQTALAELMARDLSGEDIAVLLLDGEHMVER
CVVVALAITADGTKKPVGLWDGSTENKTVVRSLLADLVARGLRFDDGLLVVLDGAKALASAVREVFGDKAAVQRCTLHKRRNVAAHLPAKDQAWVDAKLV
KAFNHPDPAQGLHNAKHLAAQLDKNHPGAAASLREGLEEMFTVARLGIDGRLAVTLTTSNPIESMLSIARTTNRNVTRWRDGQMVLRWTAAGMLNAERSF
RRVKGYKQMPQLIAALHRHAHPQTATDTKTVSAAA

 

Blast result :
Comments
ISMyo1 is 65% aa similar to IS1295.
References
1] ISfinder annotation (2013)
2] Kim,B.-J., Lee,J.H., Lim,J.-S., Choi,I.-Y., Choi,B.-S. and Lim,J.-S. (2013) Direct submission GenBank.