ISCla2

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015949 ND Caldicellulosiruptor lactoaceticus
Caldicellulosiruptor lactoaceticus 6A
DNA section
IS Length : 1610 bp

Ends


IR Length : 16/23

IRL : CTTAGTGTAAAATATTTATAGGACTTTAGATGGAAAAACAGCTCCCTCCT
IRR : GATAGTGTCAAGAGTTTGTAGGAAAAATTTTTTATTAAAATACAACTGCA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTGATTTGTTAGGTCGTTTAGTTATTG9
AACAAACTCTACATAACCGTTTGCTTTTG9
TGAAAATCTACCAGCAAATTTTTTCCTTG9
AACCTTGCCCTTTTTCTTTTGACAAAATT9
TTAAAACCAGCAGCCAAAGAACAGATTTG9
ATTTTATATAAAGTTTCTAAGGTAATTTG9
TCTGCCTTTAGCACCTCTTAATCGTGTGG9
TTATTTTAGATGAATGGCAAAAATAAAAG9
ATAGCTTTTCAGATGCCAAAAAGGTCTTT9
CAATCCTTTATAAAGAAAATTAATCCTTG9
AATATAACTCTATTTTTAATTTTCCCTTT9
TAAAATGAGACTATACAAAAGTGTAATGG9
ATGGTGGTGCTGACACTGTAATTGGAGTT9
ACTGGACGGGACTACTGGCATACCACTTG8
TCAAAAAGCAAAGGGGTTTATTTTTTTTG8
TTATTCAAAAATCCTTGTCCAAGCAATT8
CTACAACTAAAGTTTTCTCTGTCACTTG8
AAAAACAGCTATTTTTTTAT0
TTTTTTATTTACAATTTTGT0
AAAAACAGCTTGTAGTTTGC0
ATTTATAAATATAGAAAGAG0

DNA sequence

CTTAGTGTAAAATATTTATAGGACTTTAGATGGAAAAACAGCTCCCTCCTCTTGGCAAAAAATTAAAGAATGATATAAAATAATGAGTAAAAAAGTGAAA
AGCAAAAAGGAAAAACAAACCAAGGGAGGGAGCGAAATGTTTGATAATATTATAGCAAAAATAGAAGAACTTTTAAATAGGTTTGGAGAAGGGATAGTGG
AAATATTAAGAGGTGAGAAAGATATAGCGAAGTATTCAATGGAATTGAAGGTAAAGATGGATGAGATAGGGAAGGAGATGATAAAAGAGGTATGCGGGCT
TGTAGATGAGATTGTAAGGAATGAAAAGGAGAGGAAGGCAAGGTATGATGTTGTAAGGAAAGATAGGAGGAACATAAAGACAATATTTGGAGATGTGGAA
TATATAAGGACATACTACAAGAATAAAGGAGATGGAGGGTATGTATATTTAGCAGACGAAATTTTGGGGATAGAGAAATACCAAAGGATAGACAAAGCAG
TCAAAGCAGCAATAGTTGAGAAGGTAGTGGAGATGTCATATGAGAAAGCGGCCAAAGAAGTATTAGGAGAAGAGAAAATTACAAGACAAAGTGTAATGAA
TATTTTGAAAAGGATAGAGGCAGCTCAGTTAGATAGAATCGAGGATAATAAGAAAGGAGTTGCGGGCAGTAAGAAAGTAGTAAAAGAACTTTATATAGAG
GCAGATGAAGATCATATTTCATTACAAAGTGGGGAGGGAAAGATAGCGAAACTTGCATACATAAATGAGGGATATAAAGAAGAGGAAGGGATTGTCAAGA
GGAAGGAATTAAAAGGAGTGCATTATTTTAGTAGTATTAAAGAGAAACCAGAAGATATTTGGTCAAAAGTAAGTGAATATATAGAGGAGCGCTATGAAAC
TGAGAAGATAGAGAAGATATATTTGTTAGGGGATGGAGCGGCATGGATAAAGGAAGGGCTTGAATGGATACCGAGGGCAGAATTTGTATTAGACAGATTT
CACCTAATGAGGGAAGTGATAAGGATAAGTAGGGGGAATAAGAAGATATTTGCTGGGATAATAGAAGCATTGAAAGGTAGGGATAGAGAGAAGTTTGAGA
AGTTAGTAGCCGAGGCAATGGAGAAAGCTGAAGGTGATGAGAAAGCGAAGAAGAGGATAAGGGATAGCAGGAGATATATAGCCAATCACTGGGATAATAT
AGTATTAGAGTTAGATAATAGGATTATAAAAGGATGCAGTGCAGAAGGGCATGTAAGCCATGTATTGGCAGATAGGATGAGTTCAAGACCAAGGGGATGG
AGCGAAGAAGGAGCAGAGGTAATGGTAAAGCTATTGAGCTTGAAGTATAATGGAGTAAACTTGAGAGAAGCGTATTTAAAAGAGATTTGTAGTAAGGAAG
AGAAAAAAGAAAAAATATTGAAAGAGATTGTGAGAAAAAATATTAAGAAGATAAAGAAACAGATTGAGGAGACGAGGAATAATGTGCCAATTTTAGCAAG
AGGAAAAGTTGATTTAATGTTTAGGGTATTGAAAGGACTAAGTACTAGAGATTTCTTAAATGCAGTTGTATTTTAATAAAAAATTTTTCCTACAAACTCT
TGACACTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1440 bp479 aa1371576+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFDNIIAKIEELLNRFGEGIVEILRGEKDIAKYSMELKVKMDEIGKEMIKEVCGLVDEIVRNEKERKARYDVVRKDRRNIKTIFGDVEYIRTYYKNKGDG
GYVYLADEILGIEKYQRIDKAVKAAIVEKVVEMSYEKAAKEVLGEEKITRQSVMNILKRIEAAQLDRIEDNKKGVAGSKKVVKELYIEADEDHISLQSGE
GKIAKLAYINEGYKEEEGIVKRKELKGVHYFSSIKEKPEDIWSKVSEYIEERYETEKIEKIYLLGDGAAWIKEGLEWIPRAEFVLDRFHLMREVIRISRG
NKKIFAGIIEALKGRDREKFEKLVAEAMEKAEGDEKAKKRIRDSRRYIANHWDNIVLELDNRIIKGCSAEGHVSHVLADRMSSRPRGWSEEGAEVMVKLL
SLKYNGVNLREAYLKEICSKEEKKEKILKEIVRKNIKKIKKQIEETRNNVPILARGKVDLMFRVLKGLSTRDFLNAVVF

 

Blast result :
Comments
ISCla2 is 80% aa similar to ISCbe4.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References