ISCla2
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015949 | ND | Caldicellulosiruptor lactoaceticus | Caldicellulosiruptor lactoaceticus 6A |
DNA section
IS Length : 1610 bp
Ends
IR Length : 16/23
IRL : CTTAGTGTAAAATATTTATAGGACTTTAGATGGAAAAACAGCTCCCTCCT
IRR : GATAGTGTCAAGAGTTTGTAGGAAAAATTTTTTATTAAAATACAACTGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTGATTTG | TTAGGTCGT | TTAGTTATTG | 9 |
AACAAACTCT | ACATAACCG | TTTGCTTTTG | 9 |
TGAAAATCTA | CCAGCAAAT | TTTTTCCTTG | 9 |
AACCTTGCCC | TTTTTCTTT | TGACAAAATT | 9 |
TTAAAACCAG | CAGCCAAAG | AACAGATTTG | 9 |
ATTTTATATA | AAGTTTCTA | AGGTAATTTG | 9 |
TCTGCCTTTA | GCACCTCTT | AATCGTGTGG | 9 |
TTATTTTAGA | TGAATGGCA | AAAATAAAAG | 9 |
ATAGCTTTTC | AGATGCCAA | AAAGGTCTTT | 9 |
CAATCCTTTA | TAAAGAAAA | TTAATCCTTG | 9 |
AATATAACTC | TATTTTTAA | TTTTCCCTTT | 9 |
TAAAATGAGA | CTATACAAA | AGTGTAATGG | 9 |
ATGGTGGTGC | TGACACTGT | AATTGGAGTT | 9 |
ACTGGACGGG | ACTACTGG | CATACCACTTG | 8 |
TCAAAAAGCA | AAGGGGTT | TATTTTTTTTG | 8 |
TTATTCAAAA | ATCCTTGT | CCAAGCAATT | 8 |
CTACAACTAA | AGTTTTCT | CTGTCACTTG | 8 |
AAAAACAGCT | ATTTTTTTAT | 0 | |
TTTTTTATTT | ACAATTTTGT | 0 | |
AAAAACAGCT | TGTAGTTTGC | 0 | |
ATTTATAAAT | ATAGAAAGAG | 0 |
DNA sequence
CTTAGTGTAAAATATTTATAGGACTTTAGATGGAAAAACAGCTCCCTCCTCTTGGCAAAAAATTAAAGAATGATATAAAATAATGAGTAAAAAAGTGAAA
AGCAAAAAGGAAAAACAAACCAAGGGAGGGAGCGAAATGTTTGATAATATTATAGCAAAAATAGAAGAACTTTTAAATAGGTTTGGAGAAGGGATAGTGG
AAATATTAAGAGGTGAGAAAGATATAGCGAAGTATTCAATGGAATTGAAGGTAAAGATGGATGAGATAGGGAAGGAGATGATAAAAGAGGTATGCGGGCT
TGTAGATGAGATTGTAAGGAATGAAAAGGAGAGGAAGGCAAGGTATGATGTTGTAAGGAAAGATAGGAGGAACATAAAGACAATATTTGGAGATGTGGAA
TATATAAGGACATACTACAAGAATAAAGGAGATGGAGGGTATGTATATTTAGCAGACGAAATTTTGGGGATAGAGAAATACCAAAGGATAGACAAAGCAG
TCAAAGCAGCAATAGTTGAGAAGGTAGTGGAGATGTCATATGAGAAAGCGGCCAAAGAAGTATTAGGAGAAGAGAAAATTACAAGACAAAGTGTAATGAA
TATTTTGAAAAGGATAGAGGCAGCTCAGTTAGATAGAATCGAGGATAATAAGAAAGGAGTTGCGGGCAGTAAGAAAGTAGTAAAAGAACTTTATATAGAG
GCAGATGAAGATCATATTTCATTACAAAGTGGGGAGGGAAAGATAGCGAAACTTGCATACATAAATGAGGGATATAAAGAAGAGGAAGGGATTGTCAAGA
GGAAGGAATTAAAAGGAGTGCATTATTTTAGTAGTATTAAAGAGAAACCAGAAGATATTTGGTCAAAAGTAAGTGAATATATAGAGGAGCGCTATGAAAC
TGAGAAGATAGAGAAGATATATTTGTTAGGGGATGGAGCGGCATGGATAAAGGAAGGGCTTGAATGGATACCGAGGGCAGAATTTGTATTAGACAGATTT
CACCTAATGAGGGAAGTGATAAGGATAAGTAGGGGGAATAAGAAGATATTTGCTGGGATAATAGAAGCATTGAAAGGTAGGGATAGAGAGAAGTTTGAGA
AGTTAGTAGCCGAGGCAATGGAGAAAGCTGAAGGTGATGAGAAAGCGAAGAAGAGGATAAGGGATAGCAGGAGATATATAGCCAATCACTGGGATAATAT
AGTATTAGAGTTAGATAATAGGATTATAAAAGGATGCAGTGCAGAAGGGCATGTAAGCCATGTATTGGCAGATAGGATGAGTTCAAGACCAAGGGGATGG
AGCGAAGAAGGAGCAGAGGTAATGGTAAAGCTATTGAGCTTGAAGTATAATGGAGTAAACTTGAGAGAAGCGTATTTAAAAGAGATTTGTAGTAAGGAAG
AGAAAAAAGAAAAAATATTGAAAGAGATTGTGAGAAAAAATATTAAGAAGATAAAGAAACAGATTGAGGAGACGAGGAATAATGTGCCAATTTTAGCAAG
AGGAAAAGTTGATTTAATGTTTAGGGTATTGAAAGGACTAAGTACTAGAGATTTCTTAAATGCAGTTGTATTTTAATAAAAAATTTTTCCTACAAACTCT
TGACACTATC
AGCAAAAAGGAAAAACAAACCAAGGGAGGGAGCGAAATGTTTGATAATATTATAGCAAAAATAGAAGAACTTTTAAATAGGTTTGGAGAAGGGATAGTGG
AAATATTAAGAGGTGAGAAAGATATAGCGAAGTATTCAATGGAATTGAAGGTAAAGATGGATGAGATAGGGAAGGAGATGATAAAAGAGGTATGCGGGCT
TGTAGATGAGATTGTAAGGAATGAAAAGGAGAGGAAGGCAAGGTATGATGTTGTAAGGAAAGATAGGAGGAACATAAAGACAATATTTGGAGATGTGGAA
TATATAAGGACATACTACAAGAATAAAGGAGATGGAGGGTATGTATATTTAGCAGACGAAATTTTGGGGATAGAGAAATACCAAAGGATAGACAAAGCAG
TCAAAGCAGCAATAGTTGAGAAGGTAGTGGAGATGTCATATGAGAAAGCGGCCAAAGAAGTATTAGGAGAAGAGAAAATTACAAGACAAAGTGTAATGAA
TATTTTGAAAAGGATAGAGGCAGCTCAGTTAGATAGAATCGAGGATAATAAGAAAGGAGTTGCGGGCAGTAAGAAAGTAGTAAAAGAACTTTATATAGAG
GCAGATGAAGATCATATTTCATTACAAAGTGGGGAGGGAAAGATAGCGAAACTTGCATACATAAATGAGGGATATAAAGAAGAGGAAGGGATTGTCAAGA
GGAAGGAATTAAAAGGAGTGCATTATTTTAGTAGTATTAAAGAGAAACCAGAAGATATTTGGTCAAAAGTAAGTGAATATATAGAGGAGCGCTATGAAAC
TGAGAAGATAGAGAAGATATATTTGTTAGGGGATGGAGCGGCATGGATAAAGGAAGGGCTTGAATGGATACCGAGGGCAGAATTTGTATTAGACAGATTT
CACCTAATGAGGGAAGTGATAAGGATAAGTAGGGGGAATAAGAAGATATTTGCTGGGATAATAGAAGCATTGAAAGGTAGGGATAGAGAGAAGTTTGAGA
AGTTAGTAGCCGAGGCAATGGAGAAAGCTGAAGGTGATGAGAAAGCGAAGAAGAGGATAAGGGATAGCAGGAGATATATAGCCAATCACTGGGATAATAT
AGTATTAGAGTTAGATAATAGGATTATAAAAGGATGCAGTGCAGAAGGGCATGTAAGCCATGTATTGGCAGATAGGATGAGTTCAAGACCAAGGGGATGG
AGCGAAGAAGGAGCAGAGGTAATGGTAAAGCTATTGAGCTTGAAGTATAATGGAGTAAACTTGAGAGAAGCGTATTTAAAAGAGATTTGTAGTAAGGAAG
AGAAAAAAGAAAAAATATTGAAAGAGATTGTGAGAAAAAATATTAAGAAGATAAAGAAACAGATTGAGGAGACGAGGAATAATGTGCCAATTTTAGCAAG
AGGAAAAGTTGATTTAATGTTTAGGGTATTGAAAGGACTAAGTACTAGAGATTTCTTAAATGCAGTTGTATTTTAATAAAAAATTTTTCCTACAAACTCT
TGACACTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1440 bp | 479 aa | 137 | 1576 | + | No |
Chemistry : DDE
ORF sequence :
MFDNIIAKIEELLNRFGEGIVEILRGEKDIAKYSMELKVKMDEIGKEMIKEVCGLVDEIVRNEKERKARYDVVRKDRRNIKTIFGDVEYIRTYYKNKGDG
GYVYLADEILGIEKYQRIDKAVKAAIVEKVVEMSYEKAAKEVLGEEKITRQSVMNILKRIEAAQLDRIEDNKKGVAGSKKVVKELYIEADEDHISLQSGE
GKIAKLAYINEGYKEEEGIVKRKELKGVHYFSSIKEKPEDIWSKVSEYIEERYETEKIEKIYLLGDGAAWIKEGLEWIPRAEFVLDRFHLMREVIRISRG
NKKIFAGIIEALKGRDREKFEKLVAEAMEKAEGDEKAKKRIRDSRRYIANHWDNIVLELDNRIIKGCSAEGHVSHVLADRMSSRPRGWSEEGAEVMVKLL
SLKYNGVNLREAYLKEICSKEEKKEKILKEIVRKNIKKIKKQIEETRNNVPILARGKVDLMFRVLKGLSTRDFLNAVVF
GYVYLADEILGIEKYQRIDKAVKAAIVEKVVEMSYEKAAKEVLGEEKITRQSVMNILKRIEAAQLDRIEDNKKGVAGSKKVVKELYIEADEDHISLQSGE
GKIAKLAYINEGYKEEEGIVKRKELKGVHYFSSIKEKPEDIWSKVSEYIEERYETEKIEKIYLLGDGAAWIKEGLEWIPRAEFVLDRFHLMREVIRISRG
NKKIFAGIIEALKGRDREKFEKLVAEAMEKAEGDEKAKKRIRDSRRYIANHWDNIVLELDNRIIKGCSAEGHVSHVLADRMSSRPRGWSEEGAEVMVKLL
SLKYNGVNLREAYLKEICSKEEKKEKILKEIVRKNIKKIKKQIEETRNNVPILARGKVDLMFRVLKGLSTRDFLNAVVF
Blast result :
Comments
ISCla2 is 80% aa similar to ISCbe4.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References