ISLcr2
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_GL531739.1 | ND | Lactobacillus crispatus | Lactobacillus crispatus CTV-05 |
DNA section
IS Length : 1599 bp
Ends
IR Length : 18/24
IRL : CTAAGTGTATAATTTTTTACGGTAAGTTGAATAAATAATTAAAAAAGCCC
IRR : GTAAGTGTCAATGTTTTTGCGGTAGCCTTTAAACCATTAGTCTAACCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGGGCGCTA | CCCCTTCAG | CGTGCAGTTT | 9 |
ATTCAAGTCA | TTTATAACA | TAAAATATGT | 9 |
CGTAAAGCTA | AGACTATCA | CTATTGAAGT | 9 |
DNA sequence
CTAAGTGTATAATTTTTTACGGTAAGTTGAATAAATAATTAAAAAAGCCCAAGTCCTTTGAATTTGGACTTGAGCTCAAACAAAAAGACCAGTAGTCTGA
TGTTAAGAACAAAAAACACATTAGAAGCTGGTCTTTTATGAATTCAATTGTAACTGAAATCGCAAATATTATAAAGTCTGAAGATAATTATATTAAGCGT
GAAAGAAAAATAATCTGTTTCTTCTTAAACCTGATTAAGGAAATCATGGCCTTGGCTTTAGCTAAAGTTGATGATGAAATGATTACCAAGGTTAAAGCAC
AGGGCTATCAGATTGATAAGAAGAATGAGCGCTCAATCAATATGGCTTTTGGCGAAGTTAGGTATGTCAGAAGAAGATATGTCTGCCCAGGCAAACAAGC
AAGGTATCCCTTGGATGAATTAATGGGCTTTGACAAATACAAGCGCTACAGTATTTTAGCAGTCAAAAACATCTTAGAAGTAAGCAGCGTTGCCACTTAT
CGCAATACTGCTCTAGCAGTCAATTGCCTGTCTGGCTTTAATATTAGCCATATGCAGGTGGGCAATTTGGTAAAAATGGCCGGGAAAAATATTAAAGCGG
GCCAAGAAGCAGATTCAAGATATGATGCCGCAGGCACTAAGAAAAAGGTCCCAGTTTTGTATCTTGAAGGCGATGGCGTGGTGATCAAAGGCACTAAAAG
CCGGTTGGAATTTCATCGCTATCAGGTCTGTGAAGGCATTGTCAATATAAGCAAGAAACGCAGAAAGCGAATCAATGCCAAGGAATTTGTTTCTTTAAGC
CGACTTGATGCGCTGAACGAAGCCAAGGAGTACCTGGCCAATACTTATGATCTTTCTGATACTGTAATTCTTAGCAACGCCGATGGCGGTGCTGGATATG
CCAAAACAGACTTCGATGACATTGTAGGGCTATGCAAGCGTCATGAGCATTTCTTGGATGTCTTTCACCTAAATAAGAAAATCAAAGAAAGGCTATATTT
TGCGCCTGACCTGCAAGGCAAGCTGATTTCTGCTTTGGAATACAAATACAGCTATGACAAAGTTAAAACTATCCTAACCACTGCAGAAAGCCGACTAATT
GATGAATTGAATACCGAGCTCAATCATGATTATCTGGGGCGCCTAAGGAATTATATTGATCGTCATTGGGACGATATTAAGCCGTTTAAGAAACGAAAAC
TGACTGTGACTAAAGCCATTGGCTGCTGCGAGAGCAACCACCGCAAGTATACCTACCGTGTTAAGGGGCAAGGCAAGAAATGGTCAAAATCTGGAGCAGA
AGGCATGCTTAGGATCTTAAGCTGCATCAAGAATCGAGAGCTGGAATTTTGGCTTAGCAGCGAGTTTGAAGATTCAGAAATAACTGTATTGACTGAACAG
GAATTAAAAGCAGCGGCCCGTGACAGCTTAAAGAAGCGTCATGAAGTTCATTTAGGCATCCAGCATGGCGCATTAACCGCACAGGTAGCTGGCAATAGTT
ATTTAAGCAAGCTAAGCAGAAATTTAAGTCATATAAATATTTAAGAAATTAAGGTTAGACTAATGGTTTAAAGGCTACCGCAAAAACATTGACACTTAC
TGTTAAGAACAAAAAACACATTAGAAGCTGGTCTTTTATGAATTCAATTGTAACTGAAATCGCAAATATTATAAAGTCTGAAGATAATTATATTAAGCGT
GAAAGAAAAATAATCTGTTTCTTCTTAAACCTGATTAAGGAAATCATGGCCTTGGCTTTAGCTAAAGTTGATGATGAAATGATTACCAAGGTTAAAGCAC
AGGGCTATCAGATTGATAAGAAGAATGAGCGCTCAATCAATATGGCTTTTGGCGAAGTTAGGTATGTCAGAAGAAGATATGTCTGCCCAGGCAAACAAGC
AAGGTATCCCTTGGATGAATTAATGGGCTTTGACAAATACAAGCGCTACAGTATTTTAGCAGTCAAAAACATCTTAGAAGTAAGCAGCGTTGCCACTTAT
CGCAATACTGCTCTAGCAGTCAATTGCCTGTCTGGCTTTAATATTAGCCATATGCAGGTGGGCAATTTGGTAAAAATGGCCGGGAAAAATATTAAAGCGG
GCCAAGAAGCAGATTCAAGATATGATGCCGCAGGCACTAAGAAAAAGGTCCCAGTTTTGTATCTTGAAGGCGATGGCGTGGTGATCAAAGGCACTAAAAG
CCGGTTGGAATTTCATCGCTATCAGGTCTGTGAAGGCATTGTCAATATAAGCAAGAAACGCAGAAAGCGAATCAATGCCAAGGAATTTGTTTCTTTAAGC
CGACTTGATGCGCTGAACGAAGCCAAGGAGTACCTGGCCAATACTTATGATCTTTCTGATACTGTAATTCTTAGCAACGCCGATGGCGGTGCTGGATATG
CCAAAACAGACTTCGATGACATTGTAGGGCTATGCAAGCGTCATGAGCATTTCTTGGATGTCTTTCACCTAAATAAGAAAATCAAAGAAAGGCTATATTT
TGCGCCTGACCTGCAAGGCAAGCTGATTTCTGCTTTGGAATACAAATACAGCTATGACAAAGTTAAAACTATCCTAACCACTGCAGAAAGCCGACTAATT
GATGAATTGAATACCGAGCTCAATCATGATTATCTGGGGCGCCTAAGGAATTATATTGATCGTCATTGGGACGATATTAAGCCGTTTAAGAAACGAAAAC
TGACTGTGACTAAAGCCATTGGCTGCTGCGAGAGCAACCACCGCAAGTATACCTACCGTGTTAAGGGGCAAGGCAAGAAATGGTCAAAATCTGGAGCAGA
AGGCATGCTTAGGATCTTAAGCTGCATCAAGAATCGAGAGCTGGAATTTTGGCTTAGCAGCGAGTTTGAAGATTCAGAAATAACTGTATTGACTGAACAG
GAATTAAAAGCAGCGGCCCGTGACAGCTTAAAGAAGCGTCATGAAGTTCATTTAGGCATCCAGCATGGCGCATTAACCGCACAGGTAGCTGGCAATAGTT
ATTTAAGCAAGCTAAGCAGAAATTTAAGTCATATAAATATTTAAGAAATTAAGGTTAGACTAATGGTTTAAAGGCTACCGCAAAAACATTGACACTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 138 | 1544 | + | No |
Chemistry : DDE
ORF sequence :
MNSIVTEIANIIKSEDNYIKRERKIICFFLNLIKEIMALALAKVDDEMITKVKAQGYQIDKKNERSINMAFGEVRYVRRRYVCPGKQARYPLDELMGFDK
YKRYSILAVKNILEVSSVATYRNTALAVNCLSGFNISHMQVGNLVKMAGKNIKAGQEADSRYDAAGTKKKVPVLYLEGDGVVIKGTKSRLEFHRYQVCEG
IVNISKKRRKRINAKEFVSLSRLDALNEAKEYLANTYDLSDTVILSNADGGAGYAKTDFDDIVGLCKRHEHFLDVFHLNKKIKERLYFAPDLQGKLISAL
EYKYSYDKVKTILTTAESRLIDELNTELNHDYLGRLRNYIDRHWDDIKPFKKRKLTVTKAIGCCESNHRKYTYRVKGQGKKWSKSGAEGMLRILSCIKNR
ELEFWLSSEFEDSEITVLTEQELKAAARDSLKKRHEVHLGIQHGALTAQVAGNSYLSKLSRNLSHINI
YKRYSILAVKNILEVSSVATYRNTALAVNCLSGFNISHMQVGNLVKMAGKNIKAGQEADSRYDAAGTKKKVPVLYLEGDGVVIKGTKSRLEFHRYQVCEG
IVNISKKRRKRINAKEFVSLSRLDALNEAKEYLANTYDLSDTVILSNADGGAGYAKTDFDDIVGLCKRHEHFLDVFHLNKKIKERLYFAPDLQGKLISAL
EYKYSYDKVKTILTTAESRLIDELNTELNHDYLGRLRNYIDRHWDDIKPFKKRKLTVTKAIGCCESNHRKYTYRVKGQGKKWSKSGAEGMLRILSCIKNR
ELEFWLSSEFEDSEITVLTEQELKAAARDSLKKRHEVHLGIQHGALTAQVAGNSYLSKLSRNLSHINI
Blast result :
Comments
ISLcr2 is 80% aa similar to ISLcr1.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References