ISStin1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_JH930418 | ND | Streptococcus iniae | Streptococcus iniae 9117 |
DNA section
IS Length : 1315 bp
Ends
IR Length : 25/31
IRL : GGTAGTGTAAAATATCTTGTGTAAACACAAAAAAGGAATAAATCCTGTAT
IRR : GGATACTGTCAATAATTTTGTGTAAACACAAGAGTAGAGTTTTTGAATAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTTATGTC | CAATGAT | TGTTTGTTAT | 7 |
DNA sequence
GGTAGTGTAAAATATCTTGTGTAAACACAAAAAAGGAATAAATCCTGTATAGTAGAGTTACGACACTTCACTAGAAAGAGATTTATTCCCATGACTCAGT
TTACCACAGAATTACTTAACTTCCTAGCGCAAAAACAAGATATTGATGAATTCTTTCGATCCTCTTTAGAAATAGCTATGAATGATCTCTTGCAGGTTGA
ACTATCAGCTTTCCTTGGATATGAGCCATATAAAAAAGAAGGTTACAATACAGGTAATAGCCGTAATGGGACCTACTCTCGACAGTTTGAAACGAAGTAT
GGCTTAGTCAATTTAATCATTCCAAGAGATCGAAACGGCGAGTTTTCACCAGTTTTATTACCATCTTATGCTAGACGAGATGACCACTTGGAAGAGATGG
TGATTAAACTCTATCAAACTGGCGTTACGACACGCGAAATCAGTGACATTATTGAGCGCATGTATGGTCACCACTACAGTCCAGCAACGGTGTCAAATAT
CACAAAAGTGACTCAAGAAAGTGTCACTGCCTTTCATGAGCGTTCCTTTCAAACTAACTACTCAGTCTTGTATCTAGACGGAACTTACTTACCCTTGCGA
CGAGGTACGGTCAGTAAAGAATGTATTCACATTGCACTTGGTATCACGCCTGAAGGGTATAAATCAGTTCTTGGCTATGAGATTGCCCCTAATGAAAATA
ATGTCTCTTGGTCAGATCTTCTTAAGAGGCTACAAAATCAAGGACTTAAGCAAGTTTCTCTAGTTGTTACAGACGGGCTTAACGGTGTGGATCAAATCAT
CCAACAAGCCTATCCAATGGCTAAACAGCAACGGTGTCTGGTTCACATTGGTCGCAATATCTCCAGTAAGGTCAAACGAGTAGATAGGGCACCTATTCTA
AATCAGTTCAAGCAGATTTATCGTGCCACAAATTTACAGGAGGCTATTAAATTATTGGAACAATTTGTTTCTGAGTGGAAACCTCGTTACAAAAAGGTTA
TGACATCACTTGAAACAACTGAAAATCTCCTAACTTTCTATCAATTTCCACATCACATTTGGTCTAGTATTTACTCTACAAACTTGATTGAATCACTCAA
TAAAGAAATCAAGCGACAAAGCAAGAAGAGGGTGGTTTTTCCAAATGAAGAAGCCTTAGAACGATGCCTTGTAAGTATTTTCGAAGACTATAACATTAAG
TTCGGAGCTCGTATTCATAAAGGATTCGGAGTATGTTTTGACACACTTGATAGCTTATTTGACTAATATTCAAAAACTCTACTCTTGTGTTTACACAAAA
TTATTGACAGTATCC
TTACCACAGAATTACTTAACTTCCTAGCGCAAAAACAAGATATTGATGAATTCTTTCGATCCTCTTTAGAAATAGCTATGAATGATCTCTTGCAGGTTGA
ACTATCAGCTTTCCTTGGATATGAGCCATATAAAAAAGAAGGTTACAATACAGGTAATAGCCGTAATGGGACCTACTCTCGACAGTTTGAAACGAAGTAT
GGCTTAGTCAATTTAATCATTCCAAGAGATCGAAACGGCGAGTTTTCACCAGTTTTATTACCATCTTATGCTAGACGAGATGACCACTTGGAAGAGATGG
TGATTAAACTCTATCAAACTGGCGTTACGACACGCGAAATCAGTGACATTATTGAGCGCATGTATGGTCACCACTACAGTCCAGCAACGGTGTCAAATAT
CACAAAAGTGACTCAAGAAAGTGTCACTGCCTTTCATGAGCGTTCCTTTCAAACTAACTACTCAGTCTTGTATCTAGACGGAACTTACTTACCCTTGCGA
CGAGGTACGGTCAGTAAAGAATGTATTCACATTGCACTTGGTATCACGCCTGAAGGGTATAAATCAGTTCTTGGCTATGAGATTGCCCCTAATGAAAATA
ATGTCTCTTGGTCAGATCTTCTTAAGAGGCTACAAAATCAAGGACTTAAGCAAGTTTCTCTAGTTGTTACAGACGGGCTTAACGGTGTGGATCAAATCAT
CCAACAAGCCTATCCAATGGCTAAACAGCAACGGTGTCTGGTTCACATTGGTCGCAATATCTCCAGTAAGGTCAAACGAGTAGATAGGGCACCTATTCTA
AATCAGTTCAAGCAGATTTATCGTGCCACAAATTTACAGGAGGCTATTAAATTATTGGAACAATTTGTTTCTGAGTGGAAACCTCGTTACAAAAAGGTTA
TGACATCACTTGAAACAACTGAAAATCTCCTAACTTTCTATCAATTTCCACATCACATTTGGTCTAGTATTTACTCTACAAACTTGATTGAATCACTCAA
TAAAGAAATCAAGCGACAAAGCAAGAAGAGGGTGGTTTTTCCAAATGAAGAAGCCTTAGAACGATGCCTTGTAAGTATTTTCGAAGACTATAACATTAAG
TTCGGAGCTCGTATTCATAAAGGATTCGGAGTATGTTTTGACACACTTGATAGCTTATTTGACTAATATTCAAAAACTCTACTCTTGTGTTTACACAAAA
TTATTGACAGTATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1176 bp | 391 aa | 91 | 1266 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
ISStin1 is 89% aa similar to IS905.
References
1] ISfinder annotation (2013)
2] Highlander,S.K., Weinstock,G.M., Nizet,V., de Azavedo,J., Qin,X., Buhay,C., Ding,Y., Gibbs,R.A., Kovar,C. and Muzny,D. (2012) Direct submission GenBank.
2] Highlander,S.K., Weinstock,G.M., Nizet,V., de Azavedo,J., Qin,X., Buhay,C., Ding,Y., Gibbs,R.A., Kovar,C. and Muzny,D. (2012) Direct submission GenBank.