ISStin1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_JH930418 ND Streptococcus iniae
Streptococcus iniae 9117
DNA section
IS Length : 1315 bp

Ends


IR Length : 25/31

IRL : GGTAGTGTAAAATATCTTGTGTAAACACAAAAAAGGAATAAATCCTGTAT
IRR : GGATACTGTCAATAATTTTGTGTAAACACAAGAGTAGAGTTTTTGAATAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTTATGTCCAATGATTGTTTGTTAT7

DNA sequence

GGTAGTGTAAAATATCTTGTGTAAACACAAAAAAGGAATAAATCCTGTATAGTAGAGTTACGACACTTCACTAGAAAGAGATTTATTCCCATGACTCAGT
TTACCACAGAATTACTTAACTTCCTAGCGCAAAAACAAGATATTGATGAATTCTTTCGATCCTCTTTAGAAATAGCTATGAATGATCTCTTGCAGGTTGA
ACTATCAGCTTTCCTTGGATATGAGCCATATAAAAAAGAAGGTTACAATACAGGTAATAGCCGTAATGGGACCTACTCTCGACAGTTTGAAACGAAGTAT
GGCTTAGTCAATTTAATCATTCCAAGAGATCGAAACGGCGAGTTTTCACCAGTTTTATTACCATCTTATGCTAGACGAGATGACCACTTGGAAGAGATGG
TGATTAAACTCTATCAAACTGGCGTTACGACACGCGAAATCAGTGACATTATTGAGCGCATGTATGGTCACCACTACAGTCCAGCAACGGTGTCAAATAT
CACAAAAGTGACTCAAGAAAGTGTCACTGCCTTTCATGAGCGTTCCTTTCAAACTAACTACTCAGTCTTGTATCTAGACGGAACTTACTTACCCTTGCGA
CGAGGTACGGTCAGTAAAGAATGTATTCACATTGCACTTGGTATCACGCCTGAAGGGTATAAATCAGTTCTTGGCTATGAGATTGCCCCTAATGAAAATA
ATGTCTCTTGGTCAGATCTTCTTAAGAGGCTACAAAATCAAGGACTTAAGCAAGTTTCTCTAGTTGTTACAGACGGGCTTAACGGTGTGGATCAAATCAT
CCAACAAGCCTATCCAATGGCTAAACAGCAACGGTGTCTGGTTCACATTGGTCGCAATATCTCCAGTAAGGTCAAACGAGTAGATAGGGCACCTATTCTA
AATCAGTTCAAGCAGATTTATCGTGCCACAAATTTACAGGAGGCTATTAAATTATTGGAACAATTTGTTTCTGAGTGGAAACCTCGTTACAAAAAGGTTA
TGACATCACTTGAAACAACTGAAAATCTCCTAACTTTCTATCAATTTCCACATCACATTTGGTCTAGTATTTACTCTACAAACTTGATTGAATCACTCAA
TAAAGAAATCAAGCGACAAAGCAAGAAGAGGGTGGTTTTTCCAAATGAAGAAGCCTTAGAACGATGCCTTGTAAGTATTTTCGAAGACTATAACATTAAG
TTCGGAGCTCGTATTCATAAAGGATTCGGAGTATGTTTTGACACACTTGATAGCTTATTTGACTAATATTCAAAAACTCTACTCTTGTGTTTACACAAAA
TTATTGACAGTATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1176 bp391 aa911266+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
ISStin1 is 89% aa similar to IS905.
References
1] ISfinder annotation (2013)
2] Highlander,S.K., Weinstock,G.M., Nizet,V., de Azavedo,J., Qin,X., Buhay,C., Ding,Y., Gibbs,R.A., Kovar,C. and Muzny,D. (2012) Direct submission GenBank.