ISSdy3

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012891 ND Streptococcus dysgalactiae
Streptococcus dysgalactiae subsp. equisimilis GGS_124
DNA section
IS Length : 1312 bp

Ends


IR Length : 23/28

IRL : GGTAATGTAAAATATCTTGTGTAAACACAAAAAGGAATAAATCCTGTATA
IRR : GGTACTGTCAATAATTTTGTGTAAACACCTAGTCGAGTTTCTAAATGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
AATCTTTTTGGAAAACGATC0

DNA sequence

GGTAATGTAAAATATCTTGTGTAAACACAAAAAGGAATAAATCCTGTATAGTAGAGTTGCGACACTTCACTAGAAAGAGATTTATTCCCATGACCCAGTT
TACCACAGAATTGCTAAACTTCCTAGCCCAAAAGCAAGATATCGATGACTTCTTTCGTCAATCTCTAGAGACAGCCATGAATGAGCTCTTGCAAGCTGAA
TTATCAGCTTTTCTCGGATATGAACCCTATGAGAAAAGTGGTTATAACACAGGTAATAGTCGCAATGGCACCTATTCTCGTCAATTTGAAACCAAATATG
GAACTGTGAGTTTAGCAATACCAAGAGATCGAAATGGTGAGTTTTCACCAGCTATCTTGCCGTCCTATACTAGACGTGATGACCATCTAGAAGAAATGGT
TATCAAACTCTACCAAACTGGCGTAACAACTCGTGAAATCAGCGAGATTATCGAACGAATGTATGGTCATCACTATAGTCCGACGACTGTGTCAAATATC
ACAAAAGTAACACAAGAGAACGTCACTGCTTTTCACGAGCGCACACTTAAGGAAAACTATTCCGTGCTTTATCTTGACGGGACATACTTACCTTTGCGCC
GAGGAACGGTTAGTAAAGAATGCGTTCATATTGCTCTTGGGATTACTCCTGAGGGCTATAAATCCGTTTTAGGATATGAGATTGCACCAAATGAGAATAA
TACTTCTTGGAGTGACCTTCTCAATCGACTTCAAAGGCAAGGAGTCCAGCAAGTGTCGCTAGTTGTCACTGATGGATTCAATGGCTTGGAGCGAGTCATC
CAACAAGTTTATCCTTTAGCAAAACAGCAACGTTGCTTAGTTCATATTGCTCGCAATATGTCGAGTAAAGTCAAACGTGTAGACAGAGCCCCTATTATTG
AGCAGTTTAAACAGGTTTATCGAGCAACTAGCTTTGAGGAAGCAAGGAAGTTCTTGAGACAGTTTATGGATGAGTGGAAACCTCGTTATAAGAAGGTGAT
GGAGTCGCTTGAAAAGACAGAGAATTTATTCACCTTTTACCAGCTCCCATACTGTATTTGGCCAAGCATGTACTCGACTAACTTGATTGAATCACTGAAT
AAAGAAATTAAGAGACAGTGTAAAAAGAAAGTAGAATTTCCAAATGAAGAATCACTTGAGCGATGTTTGGTAACTATTTTTGAAGACTATAATTTCAAGT
TTGGACACCGCGTTCATAAAGGTTTTGGAGCGTGTTCTGATACCCTGGATAGTCTATTTGATTAACATTTAGAAACTCGACTAGGTGTTTACACAAAATT
ATTGACAGTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa571265+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRHFTRKRFIPMTQFTTELLNFLAQKQDIDDFFRQSLETAMNELLQAELSAFLGYEPYEKSGYNTGNSRNGTYSRQFETKYGTVSLAIPRDRNGEFSPAI
LPSYTRRDDHLEEMVIKLYQTGVTTREISEIIERMYGHHYSPTTVSNITKVTQENVTAFHERTLKENYSVLYLDGTYLPLRRGTVSKECVHIALGITPEG
YKSVLGYEIAPNENNTSWSDLLNRLQRQGVQQVSLVVTDGFNGLERVIQQVYPLAKQQRCLVHIARNMSSKVKRVDRAPIIEQFKQVYRATSFEEARKFL
RQFMDEWKPRYKKVMESLEKTENLFTFYQLPYCIWPSMYSTNLIESLNKEIKRQCKKKVEFPNEESLERCLVTIFEDYNFKFGHRVHKGFGACSDTLDSL
FD

 

Blast result :
Comments
ISSdy3 is 89% aa similar to IS905.
References
1] ISfinder annotation (2013)
2] Shimomura,Y., Okumura,K., Yamagata Murayama,S., Yagi,J., Ubukata,K., Kirikae,T. and Miyoshi-Akiyama,T. (2011) BMC Genomics 12 (1), 17.