ISSdy3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012891 | ND | Streptococcus dysgalactiae | Streptococcus dysgalactiae subsp. equisimilis GGS_124 |
DNA section
IS Length : 1312 bp
Ends
IR Length : 23/28
IRL : GGTAATGTAAAATATCTTGTGTAAACACAAAAAGGAATAAATCCTGTATA
IRR : GGTACTGTCAATAATTTTGTGTAAACACCTAGTCGAGTTTCTAAATGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCTTTTTG | GAAAACGATC | 0 |
DNA sequence
GGTAATGTAAAATATCTTGTGTAAACACAAAAAGGAATAAATCCTGTATAGTAGAGTTGCGACACTTCACTAGAAAGAGATTTATTCCCATGACCCAGTT
TACCACAGAATTGCTAAACTTCCTAGCCCAAAAGCAAGATATCGATGACTTCTTTCGTCAATCTCTAGAGACAGCCATGAATGAGCTCTTGCAAGCTGAA
TTATCAGCTTTTCTCGGATATGAACCCTATGAGAAAAGTGGTTATAACACAGGTAATAGTCGCAATGGCACCTATTCTCGTCAATTTGAAACCAAATATG
GAACTGTGAGTTTAGCAATACCAAGAGATCGAAATGGTGAGTTTTCACCAGCTATCTTGCCGTCCTATACTAGACGTGATGACCATCTAGAAGAAATGGT
TATCAAACTCTACCAAACTGGCGTAACAACTCGTGAAATCAGCGAGATTATCGAACGAATGTATGGTCATCACTATAGTCCGACGACTGTGTCAAATATC
ACAAAAGTAACACAAGAGAACGTCACTGCTTTTCACGAGCGCACACTTAAGGAAAACTATTCCGTGCTTTATCTTGACGGGACATACTTACCTTTGCGCC
GAGGAACGGTTAGTAAAGAATGCGTTCATATTGCTCTTGGGATTACTCCTGAGGGCTATAAATCCGTTTTAGGATATGAGATTGCACCAAATGAGAATAA
TACTTCTTGGAGTGACCTTCTCAATCGACTTCAAAGGCAAGGAGTCCAGCAAGTGTCGCTAGTTGTCACTGATGGATTCAATGGCTTGGAGCGAGTCATC
CAACAAGTTTATCCTTTAGCAAAACAGCAACGTTGCTTAGTTCATATTGCTCGCAATATGTCGAGTAAAGTCAAACGTGTAGACAGAGCCCCTATTATTG
AGCAGTTTAAACAGGTTTATCGAGCAACTAGCTTTGAGGAAGCAAGGAAGTTCTTGAGACAGTTTATGGATGAGTGGAAACCTCGTTATAAGAAGGTGAT
GGAGTCGCTTGAAAAGACAGAGAATTTATTCACCTTTTACCAGCTCCCATACTGTATTTGGCCAAGCATGTACTCGACTAACTTGATTGAATCACTGAAT
AAAGAAATTAAGAGACAGTGTAAAAAGAAAGTAGAATTTCCAAATGAAGAATCACTTGAGCGATGTTTGGTAACTATTTTTGAAGACTATAATTTCAAGT
TTGGACACCGCGTTCATAAAGGTTTTGGAGCGTGTTCTGATACCCTGGATAGTCTATTTGATTAACATTTAGAAACTCGACTAGGTGTTTACACAAAATT
ATTGACAGTACC
TACCACAGAATTGCTAAACTTCCTAGCCCAAAAGCAAGATATCGATGACTTCTTTCGTCAATCTCTAGAGACAGCCATGAATGAGCTCTTGCAAGCTGAA
TTATCAGCTTTTCTCGGATATGAACCCTATGAGAAAAGTGGTTATAACACAGGTAATAGTCGCAATGGCACCTATTCTCGTCAATTTGAAACCAAATATG
GAACTGTGAGTTTAGCAATACCAAGAGATCGAAATGGTGAGTTTTCACCAGCTATCTTGCCGTCCTATACTAGACGTGATGACCATCTAGAAGAAATGGT
TATCAAACTCTACCAAACTGGCGTAACAACTCGTGAAATCAGCGAGATTATCGAACGAATGTATGGTCATCACTATAGTCCGACGACTGTGTCAAATATC
ACAAAAGTAACACAAGAGAACGTCACTGCTTTTCACGAGCGCACACTTAAGGAAAACTATTCCGTGCTTTATCTTGACGGGACATACTTACCTTTGCGCC
GAGGAACGGTTAGTAAAGAATGCGTTCATATTGCTCTTGGGATTACTCCTGAGGGCTATAAATCCGTTTTAGGATATGAGATTGCACCAAATGAGAATAA
TACTTCTTGGAGTGACCTTCTCAATCGACTTCAAAGGCAAGGAGTCCAGCAAGTGTCGCTAGTTGTCACTGATGGATTCAATGGCTTGGAGCGAGTCATC
CAACAAGTTTATCCTTTAGCAAAACAGCAACGTTGCTTAGTTCATATTGCTCGCAATATGTCGAGTAAAGTCAAACGTGTAGACAGAGCCCCTATTATTG
AGCAGTTTAAACAGGTTTATCGAGCAACTAGCTTTGAGGAAGCAAGGAAGTTCTTGAGACAGTTTATGGATGAGTGGAAACCTCGTTATAAGAAGGTGAT
GGAGTCGCTTGAAAAGACAGAGAATTTATTCACCTTTTACCAGCTCCCATACTGTATTTGGCCAAGCATGTACTCGACTAACTTGATTGAATCACTGAAT
AAAGAAATTAAGAGACAGTGTAAAAAGAAAGTAGAATTTCCAAATGAAGAATCACTTGAGCGATGTTTGGTAACTATTTTTGAAGACTATAATTTCAAGT
TTGGACACCGCGTTCATAAAGGTTTTGGAGCGTGTTCTGATACCCTGGATAGTCTATTTGATTAACATTTAGAAACTCGACTAGGTGTTTACACAAAATT
ATTGACAGTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 57 | 1265 | + | No |
Chemistry : DDE
ORF sequence :
MRHFTRKRFIPMTQFTTELLNFLAQKQDIDDFFRQSLETAMNELLQAELSAFLGYEPYEKSGYNTGNSRNGTYSRQFETKYGTVSLAIPRDRNGEFSPAI
LPSYTRRDDHLEEMVIKLYQTGVTTREISEIIERMYGHHYSPTTVSNITKVTQENVTAFHERTLKENYSVLYLDGTYLPLRRGTVSKECVHIALGITPEG
YKSVLGYEIAPNENNTSWSDLLNRLQRQGVQQVSLVVTDGFNGLERVIQQVYPLAKQQRCLVHIARNMSSKVKRVDRAPIIEQFKQVYRATSFEEARKFL
RQFMDEWKPRYKKVMESLEKTENLFTFYQLPYCIWPSMYSTNLIESLNKEIKRQCKKKVEFPNEESLERCLVTIFEDYNFKFGHRVHKGFGACSDTLDSL
FD
LPSYTRRDDHLEEMVIKLYQTGVTTREISEIIERMYGHHYSPTTVSNITKVTQENVTAFHERTLKENYSVLYLDGTYLPLRRGTVSKECVHIALGITPEG
YKSVLGYEIAPNENNTSWSDLLNRLQRQGVQQVSLVVTDGFNGLERVIQQVYPLAKQQRCLVHIARNMSSKVKRVDRAPIIEQFKQVYRATSFEEARKFL
RQFMDEWKPRYKKVMESLEKTENLFTFYQLPYCIWPSMYSTNLIESLNKEIKRQCKKKVEFPNEESLERCLVTIFEDYNFKFGHRVHKGFGACSDTLDSL
FD
Blast result :
Comments
ISSdy3 is 89% aa similar to IS905.
References
1] ISfinder annotation (2013)
2] Shimomura,Y., Okumura,K., Yamagata Murayama,S., Yagi,J., Ubukata,K., Kirikae,T. and Miyoshi-Akiyama,T. (2011) BMC Genomics 12 (1), 17.
2] Shimomura,Y., Okumura,K., Yamagata Murayama,S., Yagi,J., Ubukata,K., Kirikae,T. and Miyoshi-Akiyama,T. (2011) BMC Genomics 12 (1), 17.