ISMco5

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015416 ND Methanosaeta concilii
Methanosaeta concilii GP6
DNA section
IS Length : 1377 bp

Ends


IR Length : 23/29

IRL : GGTAGTGTCCCGATTGTGATGTAAAATAGTAGTAATAATCCTGGCGATGT
IRR : GGTAGTGTCCCGAAATTGCTGTAATTTAGCCGCCCTGTATCCTACTATCA

Insertion site


Left flankDirect repeatRight flankDR Length
TACCCCCGACATTATGACTA0
ATATTATGACCCAGGATATG0
GAGGATGATCCCCAACCGGC0
TGGCGAAGTCGGCGAAGGTA0

DNA sequence

GGTAGTGTCCCGATTGTGATGTAAAATAGTAGTAATAATCCTGGCGATGTATTGGATGCTGCTTTGGTAGTAGCAGCATTTTTGATCATTTGCAAGAATT
ATAATAGGCCCTGTATCCATACTTGAGTTGTCTCGAAATCAAGGAGGACACAAGGCCATGCAACCATTAGAGCCAGTAATAAATTATCTTGTCGATGTCC
CGATTGAGATCGGGACTCTTTCCCCGTAGGTGAAAGATCCGAATAGCGGACTGAAGCAGGTCATAACCGAGTTCCTGAACGCGGTAATGCTGTTTGAGGC
ATATCTGCAGAGCGGTGCGCTTCCCTACGAGCGCAGCCCTCAGAGAAAGGCACACAGAAACGGCACCAGATCGAGAACCCTCAAGACCCGCGTTGGCGAA
TTAACCCTTAATAAGCCTCAGTTCAGAGAATTCCCATTTGAATCAAGCGTATTTGAAAGATACTGTCGTGTAGAACAAGCTCTGCTAATGACGATTGCAG
AATCATATATCCAGGGCGTTTCAACCCGAAAAATGGAGGAATTGGTCGAAAACTTCGGTTTGAACAGGTTATCTGCGTCTGAGGTCTCTCGTTTATGCAA
GATTCTCGACGAAAAAGTGGAGGAGTTCCTCAAGCGCCCAATTGAAGTCAAGATTCGCTATCTGCTGGTTGACGCTACCTACTTCAAGGTGAGATGCGGT
GCCCAATACAAGAACAGGGCTTTGCTGGTTGTAGTGGGGGTTCGCGAGGATGGTCTCAGAGAGATCTTGGGCGCCAGCATAGCGGAATCGGAGGACAGTG
GCTATTGGATGACACTATTCAGAAGCCTCAAGGATAGGGGATTAGAGGGCGTCGAGTTGGTGATATCAGATGCACACAAGGGCATTCAAAAAGCAGTGGA
ATTGTCTTTTGTGGGAGCCTCCTGGCAGTATTGCCGTTTTCACCATTCAAGAGCGGTCCTGGAGAGCATTCCCAACAAGGACAAACAGGAGATCGCCGAT
AAGCTAAAAGAAGCATCTGATGACGAGATAAAGATGCAAGAACTGGCGAAGGAGCTGAGAGATAGAGGTTACGATCCTGCTGCAGAGACAATCGACAGGT
TCAGATTCGATCTATGGAATTATAAGGCGTATCCGAAGGCCCATTGGAAGAGGATACGAACCACAAACATCATTGAGCGCATCAATAAGGAATTGAAGCG
CAGAAGCAGACCTGTAGGAGCATTCCCGAGTGATCAATCCCTGATGAGATTGGCAGGATGCATCATGATAAATATAAATGAAGAGTGGGTCACAGGTAAA
AAGTATTTAACGATGGACGTATAGTAATGATAGTAGGATACAGGGCGGCTAAATTACAGCAATTTCGGGACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa2301324+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKDPNSGLKQVITEFLNAVMLFEAYLQSGALPYERSPQRKAHRNGTRSRTLKTRVGELTLNKPQFREFPFESSVFERYCRVEQALLMTIAESYIQGVSTR
KMEELVENFGLNRLSASEVSRLCKILDEKVEEFLKRPIEVKIRYLLVDATYFKVRCGAQYKNRALLVVVGVREDGLREILGASIAESEDSGYWMTLFRSL
KDRGLEGVELVISDAHKGIQKAVELSFVGASWQYCRFHHSRAVLESIPNKDKQEIADKLKEASDDEIKMQELAKELRDRGYDPAAETIDRFRFDLWNYKA
YPKAHWKRIRTTNIIERINKELKRRSRPVGAFPSDQSLMRLAGCIMININEEWVTGKKYLTMDV

 

Blast result :
Comments
ISMco5 is 78% aa similar to ISMco4.
References
1] ISfinder annotation (2013)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.