ISBlo17
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014169 | ND | Bifidobacterium longum | Bifidobacterium longum subsp. longum JDM301 Bifidobacterium longum subsp. infantis ATCC 15697 Bifidobacterium longum subsp. infantis JCM 1222 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 26
IRL : GGGTTATAGGCCAAAATGTGTGTCCGTTTTGGCTTGTGTTCCTTTGTGGC
IRR : GGGTTATAGGCCAAAATGTGTGTCCGGCGGTCTAGTCGTTCGACTGCCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCCTTTGCC | GAAAAATA | AGGGGGGACA | 8 |
GGACTACGCC | TGCGGGCC | TAGTATGCAC | 8 |
CGCCGACCGG | TATTTTCT | CACGTGAATG | 8 |
GCAAAGGGCT | GTGAATAA | CGTATCTATA | 8 |
GGCAAACCCC | AAATCAG | CCCCTCGAAA | 7 |
DNA sequence
GGGTTATAGGCCAAAATGTGTGTCCGTTTTGGCTTGTGTTCCTTTGTGGCGGTGGGCGTTCCTCCTGTTCGAGTTGTATGGGCGGGGAACTCGAGGTCGG
CCAGAATGTGTGTCCGGAATGGCCGGTCAGGCCTTGCGGCACAACGGTTGAGTGACTTTCGAGTTGGCGTGGCAGATTGGGTGGATGAACACACCTTGTT
GCGCCGTGTGCGGCGAGCCGATGAAGCGGAACGGAAGGACGAGCTCGGGACGGATCAGGTGGCGGTGCCGGAACGCCGGCTGCGGGAGCTCACGCACCCA
GTCGCGCGACAACAGCGCCCGTGATCTGCGGTGCGGTCTGGATTGGCTGTTCTCGAAACAATCGCAGGCCGAGCACCGGCTGCCGGCACGCACGCTGCGC
CGCCGGTGCGAGCTCATGTGGAGCCTGTGGCCGCCCGTGCCCCTGGTGGACGAGGTGCATCATGTGGTGCATGTGGACGGCATCCACCTGCACCGCGACG
CGGTGGTCCTGATCGCGGTGGCCGGCGGGCACGTGATCGGCTGGCACGTCGCCAAAAGCGAGAAAGCGGCGGCATGGCAGTGCCTGATGGCGCGCATCGC
GCCGCCCGACGTGCTCGTATGCGACGGCGGGGGCGGCGTCCTCAAGGCCGCGAAGGCCACGTGGCCGGATACGAGGATCCAGCGGTGCCTGTTCCACGTG
CAGGCCAACATCCTCGAGCTGACCGGCAGGCGGCCCAGACTCGAGGCGGGCGGACGGCTGCGCCGGGTGGCCCTGTCCCTGCCCCGCGTCGGGGACGCGG
GCGGCGCGGCCGAATGGCTGGTCTCCTACAACCAGTGGGAGCAGGACTTCCATTCGTTCCTCGACGAGAAGAGCGAATACGCCGACGGCGGCGTGAACGA
CATGCACCAAAGGCTCGTCAAGGCACGGCGCATGATCCGCAGACGCATCCGCGAGGGCCACCTGTTCACGTTCCTCGACGAGGGGCTCGCGTCCGTCGGC
CCGGTGCCGTCCACCAACAACCTCGTCGAATCATGGAACGCGCGCCTGCGCGACATGCTGCGCCGCCACCGCGGACTGCGGCTGGTCAGACGGCTGAAGG
CGATCTGCTGGTGGTGCCACCAGCACACGGAACGTCCCGAGACCGACGCGTGGCTCGCGGCCAACGCGATGACCGACGAACGACTCGAGCGCCTCTACCG
GCAGGCATGGGAAAGGAGCCCGCAAGGCCAGTACGAGACGTTCGGCATCCCCGCAAGATACGGCACCGGCATCGACTGGAACGAGTTCCACACACGGGTC
GAATGGCAGTCGAACGACTAGACCGCCGGACACACATTTTGGCCTATAACCC
CCAGAATGTGTGTCCGGAATGGCCGGTCAGGCCTTGCGGCACAACGGTTGAGTGACTTTCGAGTTGGCGTGGCAGATTGGGTGGATGAACACACCTTGTT
GCGCCGTGTGCGGCGAGCCGATGAAGCGGAACGGAAGGACGAGCTCGGGACGGATCAGGTGGCGGTGCCGGAACGCCGGCTGCGGGAGCTCACGCACCCA
GTCGCGCGACAACAGCGCCCGTGATCTGCGGTGCGGTCTGGATTGGCTGTTCTCGAAACAATCGCAGGCCGAGCACCGGCTGCCGGCACGCACGCTGCGC
CGCCGGTGCGAGCTCATGTGGAGCCTGTGGCCGCCCGTGCCCCTGGTGGACGAGGTGCATCATGTGGTGCATGTGGACGGCATCCACCTGCACCGCGACG
CGGTGGTCCTGATCGCGGTGGCCGGCGGGCACGTGATCGGCTGGCACGTCGCCAAAAGCGAGAAAGCGGCGGCATGGCAGTGCCTGATGGCGCGCATCGC
GCCGCCCGACGTGCTCGTATGCGACGGCGGGGGCGGCGTCCTCAAGGCCGCGAAGGCCACGTGGCCGGATACGAGGATCCAGCGGTGCCTGTTCCACGTG
CAGGCCAACATCCTCGAGCTGACCGGCAGGCGGCCCAGACTCGAGGCGGGCGGACGGCTGCGCCGGGTGGCCCTGTCCCTGCCCCGCGTCGGGGACGCGG
GCGGCGCGGCCGAATGGCTGGTCTCCTACAACCAGTGGGAGCAGGACTTCCATTCGTTCCTCGACGAGAAGAGCGAATACGCCGACGGCGGCGTGAACGA
CATGCACCAAAGGCTCGTCAAGGCACGGCGCATGATCCGCAGACGCATCCGCGAGGGCCACCTGTTCACGTTCCTCGACGAGGGGCTCGCGTCCGTCGGC
CCGGTGCCGTCCACCAACAACCTCGTCGAATCATGGAACGCGCGCCTGCGCGACATGCTGCGCCGCCACCGCGGACTGCGGCTGGTCAGACGGCTGAAGG
CGATCTGCTGGTGGTGCCACCAGCACACGGAACGTCCCGAGACCGACGCGTGGCTCGCGGCCAACGCGATGACCGACGAACGACTCGAGCGCCTCTACCG
GCAGGCATGGGAAAGGAGCCCGCAAGGCCAGTACGAGACGTTCGGCATCCCCGCAAGATACGGCACCGGCATCGACTGGAACGAGTTCCACACACGGGTC
GAATGGCAGTCGAACGACTAGACCGCCGGACACACATTTTGGCCTATAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 185 | 1321 | + | No |
Chemistry : DDE
ORF sequence :
MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQSQAEHRLPARTLRRRCELMWSLWPPVPLVDEVHHVVHVDGI
HLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKATWPDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLP
RVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDMHQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRL
VRRLKAICWWCHQHTERPETDAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND
HLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKATWPDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLP
RVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDMHQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRL
VRRLKAICWWCHQHTERPETDAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND
Blast result :
Comments
ISblo17 is 59% aa similar to ISEle1.
References
1] ISfinder annotation (2013)
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) Direct submission GenBank.
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) Direct submission GenBank.