ISBlo17

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014169 ND Bifidobacterium longum
Bifidobacterium longum subsp. longum JDM301
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium longum subsp. infantis JCM 1222
DNA section
IS Length : 1352 bp

Ends


IR Length : 26

IRL : GGGTTATAGGCCAAAATGTGTGTCCGTTTTGGCTTGTGTTCCTTTGTGGC
IRR : GGGTTATAGGCCAAAATGTGTGTCCGGCGGTCTAGTCGTTCGACTGCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
CCCCTTTGCCGAAAAATAAGGGGGGACA8
GGACTACGCCTGCGGGCCTAGTATGCAC8
CGCCGACCGGTATTTTCTCACGTGAATG8
GCAAAGGGCTGTGAATAACGTATCTATA8
GGCAAACCCCAAATCAGCCCCTCGAAA7

DNA sequence

GGGTTATAGGCCAAAATGTGTGTCCGTTTTGGCTTGTGTTCCTTTGTGGCGGTGGGCGTTCCTCCTGTTCGAGTTGTATGGGCGGGGAACTCGAGGTCGG
CCAGAATGTGTGTCCGGAATGGCCGGTCAGGCCTTGCGGCACAACGGTTGAGTGACTTTCGAGTTGGCGTGGCAGATTGGGTGGATGAACACACCTTGTT
GCGCCGTGTGCGGCGAGCCGATGAAGCGGAACGGAAGGACGAGCTCGGGACGGATCAGGTGGCGGTGCCGGAACGCCGGCTGCGGGAGCTCACGCACCCA
GTCGCGCGACAACAGCGCCCGTGATCTGCGGTGCGGTCTGGATTGGCTGTTCTCGAAACAATCGCAGGCCGAGCACCGGCTGCCGGCACGCACGCTGCGC
CGCCGGTGCGAGCTCATGTGGAGCCTGTGGCCGCCCGTGCCCCTGGTGGACGAGGTGCATCATGTGGTGCATGTGGACGGCATCCACCTGCACCGCGACG
CGGTGGTCCTGATCGCGGTGGCCGGCGGGCACGTGATCGGCTGGCACGTCGCCAAAAGCGAGAAAGCGGCGGCATGGCAGTGCCTGATGGCGCGCATCGC
GCCGCCCGACGTGCTCGTATGCGACGGCGGGGGCGGCGTCCTCAAGGCCGCGAAGGCCACGTGGCCGGATACGAGGATCCAGCGGTGCCTGTTCCACGTG
CAGGCCAACATCCTCGAGCTGACCGGCAGGCGGCCCAGACTCGAGGCGGGCGGACGGCTGCGCCGGGTGGCCCTGTCCCTGCCCCGCGTCGGGGACGCGG
GCGGCGCGGCCGAATGGCTGGTCTCCTACAACCAGTGGGAGCAGGACTTCCATTCGTTCCTCGACGAGAAGAGCGAATACGCCGACGGCGGCGTGAACGA
CATGCACCAAAGGCTCGTCAAGGCACGGCGCATGATCCGCAGACGCATCCGCGAGGGCCACCTGTTCACGTTCCTCGACGAGGGGCTCGCGTCCGTCGGC
CCGGTGCCGTCCACCAACAACCTCGTCGAATCATGGAACGCGCGCCTGCGCGACATGCTGCGCCGCCACCGCGGACTGCGGCTGGTCAGACGGCTGAAGG
CGATCTGCTGGTGGTGCCACCAGCACACGGAACGTCCCGAGACCGACGCGTGGCTCGCGGCCAACGCGATGACCGACGAACGACTCGAGCGCCTCTACCG
GCAGGCATGGGAAAGGAGCCCGCAAGGCCAGTACGAGACGTTCGGCATCCCCGCAAGATACGGCACCGGCATCGACTGGAACGAGTTCCACACACGGGTC
GAATGGCAGTCGAACGACTAGACCGCCGGACACACATTTTGGCCTATAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa1851321+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQSQAEHRLPARTLRRRCELMWSLWPPVPLVDEVHHVVHVDGI
HLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKATWPDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLP
RVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDMHQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRL
VRRLKAICWWCHQHTERPETDAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND

 

Blast result :
Comments
ISblo17 is 59% aa similar to ISEle1.
References
1] ISfinder annotation (2013)
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) Direct submission GenBank.