ISDin1
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_GG698602 | ND | Dialister invisus | Dialister invisus DSM 15470 |
DNA section
IS Length : 1349 bp
Ends
IR Length : 19/23
IRL : GGGTTATAGGACATTTTGTGTTGATTTTAATACCGATGAAGTTAGACATT
IRR : GGGTTATAGGACAGAACGTGTTGGTGGTTAATCCCAAAAACAAGCAGGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGTAGATTTA | AAAATTTACT | 0 | |
GAACGACGCAAA | AGAATAGA | ATGAAGATTCTT | 8 |
ACTTCAAAGAAC | CGTATTTC | CATGAATAAAGG | 8 |
AGACATGTTTCA | AAATAATTAGTTTACATTAT | 0 | |
CGTCTTGCCTGT | TAGAATGC | AAAGTTCTGT | 8 |
DNA sequence
GGGTTATAGGACATTTTGTGTTGATTTTAATACCGATGAAGTTAGACATTGTCTGGCTTCATCGGTATTTTATCCTTTTCCTAAGAAGATAAAGGGTGGA
CAAAATGAGTTGGTAAAAAATCCGAAAATGATTGCTATGACTGCTTTAATTAGGGTTATATCTTTTTAAAATATGTTTATTTTAAAAGGAGAACCTTATG
AAACAAGTTAGGTGTTTATATTGCGGTTTCTTTTGCTCAAAATATGGTAAAACTCGTACAGGAAGGCAACGGTGGTACTGCAAAGAATGTCATTCTGTCT
TTGTGAATCCGATTAATAAGACGGTTCATGATTTTAAGCACTTTATTCAGTGGTTGTTTGGTAAGGATGTGCAAAAATCCATGCCTGGCAACGGTCGTGG
TTTTCGAAGGAAAACCTCTAAATTTTGGGAAATATGGCCTATGCAGCCTAAAATTGAGAGTCCGATGAATGTCATATATGTGGATGGGATTTATTTAGGA
AGAAAAGCATGTATCCTTATTTGTTGTAATGAAAGATATGTGCTTGGATGGTATTTGTGCCGCTATGAGAATTCCAGAGCCTGGGAAGCATTGATGCAGA
GAATTGCGGCTCCCGCTATGGTCGTTTCTGATGGAGGCCACGGCTTCCGGAAAGCACTAAAAAGAGTCTGGCCCAAGGCTAAGTTGCAGCGTTGTACTTT
CCATGCATTCATCCAGGTAAAGAGATACACAACCGGTAGTCCTAAAACCATTGCCGGCATTGAGATGTACATGATAGCAAAGGATTTGCTGATGATAAAA
GACATGGAGCAAGCAGGTCATTGGGTAACCCGATTGATAAACTGGAGAATAAAGCATAAGACCTTTCTTAGTGAAATGACACAAGATGAAAAAGGCAAAC
TTCGCCCTATGCATGAACGTTTACTAAAGGCCGAGCGGTCACTGGTCAGATTAGTACGGCAAAACACATTATTTACCTATTTGGATGAATCGTTGTCTTA
TGGAGAAGAACTACCATCGACAAATAACCGTATAGAAGGCGGAATAAATGCACAATTAAGAACGATGCTTAGAAACCATCGTGGGATGTCCATTGAAAGA
CGCATAAAAGCGGTTTTCTGGTGGTGTTACTTCCACACACCGAAACCGCTTTCTGCATCTGAAATCCTAAAGGTAATGCCCACTGACAGAAGCATTTCTA
AACTGTATAAAGCGATGAATGAACGATCCCAATTAGAGGATTCAATTCCCACATGGGGAGATGCTATTGTGTGGTCAGAATTACATAAATCCGATTCATT
TCCTGCTTGTTTTTGGGATTAACCACCAACACGTTCTGTCCTATAACCC
CAAAATGAGTTGGTAAAAAATCCGAAAATGATTGCTATGACTGCTTTAATTAGGGTTATATCTTTTTAAAATATGTTTATTTTAAAAGGAGAACCTTATG
AAACAAGTTAGGTGTTTATATTGCGGTTTCTTTTGCTCAAAATATGGTAAAACTCGTACAGGAAGGCAACGGTGGTACTGCAAAGAATGTCATTCTGTCT
TTGTGAATCCGATTAATAAGACGGTTCATGATTTTAAGCACTTTATTCAGTGGTTGTTTGGTAAGGATGTGCAAAAATCCATGCCTGGCAACGGTCGTGG
TTTTCGAAGGAAAACCTCTAAATTTTGGGAAATATGGCCTATGCAGCCTAAAATTGAGAGTCCGATGAATGTCATATATGTGGATGGGATTTATTTAGGA
AGAAAAGCATGTATCCTTATTTGTTGTAATGAAAGATATGTGCTTGGATGGTATTTGTGCCGCTATGAGAATTCCAGAGCCTGGGAAGCATTGATGCAGA
GAATTGCGGCTCCCGCTATGGTCGTTTCTGATGGAGGCCACGGCTTCCGGAAAGCACTAAAAAGAGTCTGGCCCAAGGCTAAGTTGCAGCGTTGTACTTT
CCATGCATTCATCCAGGTAAAGAGATACACAACCGGTAGTCCTAAAACCATTGCCGGCATTGAGATGTACATGATAGCAAAGGATTTGCTGATGATAAAA
GACATGGAGCAAGCAGGTCATTGGGTAACCCGATTGATAAACTGGAGAATAAAGCATAAGACCTTTCTTAGTGAAATGACACAAGATGAAAAAGGCAAAC
TTCGCCCTATGCATGAACGTTTACTAAAGGCCGAGCGGTCACTGGTCAGATTAGTACGGCAAAACACATTATTTACCTATTTGGATGAATCGTTGTCTTA
TGGAGAAGAACTACCATCGACAAATAACCGTATAGAAGGCGGAATAAATGCACAATTAAGAACGATGCTTAGAAACCATCGTGGGATGTCCATTGAAAGA
CGCATAAAAGCGGTTTTCTGGTGGTGTTACTTCCACACACCGAAACCGCTTTCTGCATCTGAAATCCTAAAGGTAATGCCCACTGACAGAAGCATTTCTA
AACTGTATAAAGCGATGAATGAACGATCCCAATTAGAGGATTCAATTCCCACATGGGGAGATGCTATTGTGTGGTCAGAATTACATAAATCCGATTCATT
TCCTGCTTGTTTTTGGGATTAACCACCAACACGTTCTGTCCTATAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1124 bp | 374 aa | 198 | 1321 | + | No |
Chemistry : DDE
ORF sequence :
MKQVRCLYCGFFCSKYGKTRTGRQRWYCKECHSVFVNPINKTVHDFKHFIQWLFGKDVQKSMPGNGRGFRRKTSKFWEIWPMQPKIESPMNVIYVDGIYL
GRKACILICCNERYVLGWYLCRYENSRAWEALMQRIAAPAMVVSDGGHGFRKALKRVWPKAKLQRCTFHAFIQVKRYTTGSPKTIAGIEMYMIAKDLLMI
KDMEQAGHWVTRLINWRIKHKTFLSEMTQDEKGKLRPMHERLLKAERSLVRLVRQNTLFTYLDESLSYGEELPSTNNRIEGGINAQLRTMLRNHRGMSIE
RRIKAVFWWCYFHTPKPLSASEILKVMPTDRSISKLYKAMNERSQLEDSIPTWGDAIVWSELHKSDSFPACFWD
GRKACILICCNERYVLGWYLCRYENSRAWEALMQRIAAPAMVVSDGGHGFRKALKRVWPKAKLQRCTFHAFIQVKRYTTGSPKTIAGIEMYMIAKDLLMI
KDMEQAGHWVTRLINWRIKHKTFLSEMTQDEKGKLRPMHERLLKAERSLVRLVRQNTLFTYLDESLSYGEELPSTNNRIEGGINAQLRTMLRNHRGMSIE
RRIKAVFWWCYFHTPKPLSASEILKVMPTDRSISKLYKAMNERSQLEDSIPTWGDAIVWSELHKSDSFPACFWD
Blast result :
Comments
ISDin1 is 78% aa similar to ISVesp1.
References
1] ISfinder annotation (2013)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.