ISDin1

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_GG698602 ND Dialister invisus
Dialister invisus DSM 15470
DNA section
IS Length : 1349 bp

Ends


IR Length : 19/23

IRL : GGGTTATAGGACATTTTGTGTTGATTTTAATACCGATGAAGTTAGACATT
IRR : GGGTTATAGGACAGAACGTGTTGGTGGTTAATCCCAAAAACAAGCAGGAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGTAGATTTAAAAATTTACT0
GAACGACGCAAAAGAATAGAATGAAGATTCTT8
ACTTCAAAGAACCGTATTTCCATGAATAAAGG8
AGACATGTTTCAAAATAATTAGTTTACATTAT0
CGTCTTGCCTGTTAGAATGCAAAGTTCTGT8

DNA sequence

GGGTTATAGGACATTTTGTGTTGATTTTAATACCGATGAAGTTAGACATTGTCTGGCTTCATCGGTATTTTATCCTTTTCCTAAGAAGATAAAGGGTGGA
CAAAATGAGTTGGTAAAAAATCCGAAAATGATTGCTATGACTGCTTTAATTAGGGTTATATCTTTTTAAAATATGTTTATTTTAAAAGGAGAACCTTATG
AAACAAGTTAGGTGTTTATATTGCGGTTTCTTTTGCTCAAAATATGGTAAAACTCGTACAGGAAGGCAACGGTGGTACTGCAAAGAATGTCATTCTGTCT
TTGTGAATCCGATTAATAAGACGGTTCATGATTTTAAGCACTTTATTCAGTGGTTGTTTGGTAAGGATGTGCAAAAATCCATGCCTGGCAACGGTCGTGG
TTTTCGAAGGAAAACCTCTAAATTTTGGGAAATATGGCCTATGCAGCCTAAAATTGAGAGTCCGATGAATGTCATATATGTGGATGGGATTTATTTAGGA
AGAAAAGCATGTATCCTTATTTGTTGTAATGAAAGATATGTGCTTGGATGGTATTTGTGCCGCTATGAGAATTCCAGAGCCTGGGAAGCATTGATGCAGA
GAATTGCGGCTCCCGCTATGGTCGTTTCTGATGGAGGCCACGGCTTCCGGAAAGCACTAAAAAGAGTCTGGCCCAAGGCTAAGTTGCAGCGTTGTACTTT
CCATGCATTCATCCAGGTAAAGAGATACACAACCGGTAGTCCTAAAACCATTGCCGGCATTGAGATGTACATGATAGCAAAGGATTTGCTGATGATAAAA
GACATGGAGCAAGCAGGTCATTGGGTAACCCGATTGATAAACTGGAGAATAAAGCATAAGACCTTTCTTAGTGAAATGACACAAGATGAAAAAGGCAAAC
TTCGCCCTATGCATGAACGTTTACTAAAGGCCGAGCGGTCACTGGTCAGATTAGTACGGCAAAACACATTATTTACCTATTTGGATGAATCGTTGTCTTA
TGGAGAAGAACTACCATCGACAAATAACCGTATAGAAGGCGGAATAAATGCACAATTAAGAACGATGCTTAGAAACCATCGTGGGATGTCCATTGAAAGA
CGCATAAAAGCGGTTTTCTGGTGGTGTTACTTCCACACACCGAAACCGCTTTCTGCATCTGAAATCCTAAAGGTAATGCCCACTGACAGAAGCATTTCTA
AACTGTATAAAGCGATGAATGAACGATCCCAATTAGAGGATTCAATTCCCACATGGGGAGATGCTATTGTGTGGTCAGAATTACATAAATCCGATTCATT
TCCTGCTTGTTTTTGGGATTAACCACCAACACGTTCTGTCCTATAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1124 bp374 aa1981321+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQVRCLYCGFFCSKYGKTRTGRQRWYCKECHSVFVNPINKTVHDFKHFIQWLFGKDVQKSMPGNGRGFRRKTSKFWEIWPMQPKIESPMNVIYVDGIYL
GRKACILICCNERYVLGWYLCRYENSRAWEALMQRIAAPAMVVSDGGHGFRKALKRVWPKAKLQRCTFHAFIQVKRYTTGSPKTIAGIEMYMIAKDLLMI
KDMEQAGHWVTRLINWRIKHKTFLSEMTQDEKGKLRPMHERLLKAERSLVRLVRQNTLFTYLDESLSYGEELPSTNNRIEGGINAQLRTMLRNHRGMSIE
RRIKAVFWWCYFHTPKPLSASEILKVMPTDRSISKLYKAMNERSQLEDSIPTWGDAIVWSELHKSDSFPACFWD

 

Blast result :
Comments
ISDin1 is 78% aa similar to ISVesp1.
References
1] ISfinder annotation (2013)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.