ISVat2

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AEDR01000016 ND Veillonella atypica
Veillonella atypica ACS-049-V-Sch6
DNA section
IS Length : 1260 bp

Ends


IR Length : 26

IRL : GGGTTATAGGACAAAACGTGTTGGTAAAAAGTCCCATAACCCTTGATTTT
IRR : GGGTTATAGGACAAAACGTGTTGGTACTTTAATCCCAATCATTGAAAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AAGGGAGTATCTTGTTGATATCATAACA8

DNA sequence

GGGTTATAGGACAAAACGTGTTGGTAAAAAGTCCCATAACCCTTGATTTTACTGGCTTCAATAAGGTTATATCTTCTTAGAAAATCGTGTTCTAAGTGGA
GGGAATAATCATGCTGGTAAGATGTATAAATTGTGGATTTTCTTGTCAAAAATATGGTAAAACTAAAGCTGGATCACAACGATGGTATTGTAAGCAGTGT
AACATCACTTTTACACAAACTATTGATAATACTACTAAATGTTTTCATCGATTTCTAAATTGGTTATTTAGTAAAGAAACACAACAGGATATGCCTGGGC
AAGGCCGTACATTTCGTAGAAAGATAGCTGATTTTTGGCAAATATGGCCAATGCCTCCTAAAATTGAAAACTCGAGAGATGTGGTATTTGTTGATGGTAT
TTACTTAGCTAAAAAAGCTTGTGTTTTAATCTGTTATGATGGTGAACATGTATTAGGGTGGTATTTATGTAGGTCAGAACAATCGCGCTCATGGCAAGCT
CTTATGCAGCGAATAGCGACACCCATTGTAGTGGTTTCTGATGGTGGACCTGGCCTTAGAAAAGCATTAAAAAAAGTTTGGCGTACGGCCAAACTTCAAC
GTTGTATTGTTCATGCTGTATGGCAAGTACATCGCTACACTACTAGACGGCCTAAGACGTTAGCAGGCATTATGTTAAAAGATTTAGCAAGCGATTTATA
TAGTGTAAAAACACAGGAGGATGCACAAATATGGATTCAACGATTATTTAATTGGAGAGTAACTTTTAAAGAGTTTCTAAGTGAAATGACACGTGATAGT
AATGATAATTTAAGAGCTACGCATGAACGCTTATTAAAAGCCTATAACTCTCTGGTGGTATTAATTAATACAGAGACAATGTTTAGATATTTAGATGAAA
CATTGGTGTTGGATAAAGAATGTCCGAGGACTAATAACCCTATTGAAGGTGGAGTAAACGCACAACTCAGACGTTTATTGCGTTACCATCGAGGGATGTC
TGTAGAAAAACGCATAAAAGCGGTCTTCTGGTGGTGTTATTTACACTCACCAAGACCGCTTTCTGCAAAAGAAATACTTGAGGTAATGCCAACTGATGCA
AGTATTTCTAAAATATATAGATCTATGAATGAAAGAGCCCAACTTCAAGGCATAATTCCAACTTGGGGGGATGCCATTTCTTGGGGTGATTTGCATAACT
ATGACAAATTATCTTTCAATGATTGGGATTAAAGTACCAACACGTTTTGTCCTATAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa1111232+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVRCINCGFSCQKYGKTKAGSQRWYCKQCNITFTQTIDNTTKCFHRFLNWLFSKETQQDMPGQGRTFRRKIADFWQIWPMPPKIENSRDVVFVDGIYLA
KKACVLICYDGEHVLGWYLCRSEQSRSWQALMQRIATPIVVVSDGGPGLRKALKKVWRTAKLQRCIVHAVWQVHRYTTRRPKTLAGIMLKDLASDLYSVK
TQEDAQIWIQRLFNWRVTFKEFLSEMTRDSNDNLRATHERLLKAYNSLVVLINTETMFRYLDETLVLDKECPRTNNPIEGGVNAQLRRLLRYHRGMSVEK
RIKAVFWWCYLHSPRPLSAKEILEVMPTDASISKIYRSMNERAQLQGIIPTWGDAISWGDLHNYDKLSFNDWD

 

Blast result :
Comments
ISVat2 is 75% aa similar to ISVesp1.
References
1] ISfinder annotation (2013)
2] Durkin,A.S., Madupu,R., Torralba,M., Gillis,M., Methe,B., Sutton,G. and Nelson,K.E. (2010) Direct submission GenBank.