ISBith1

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_020546 ND Bifidobacterium thermophilum
Bifidobacterium thermophilum RBL67
DNA section
IS Length : 1350 bp

Ends


IR Length : 27

IRL : GGCCTATAGGAACTAAACGTGGTGTTTATGATGCCGGTCAGGCCAAGTGG
IRR : GGGCTATAGGAACTAAACGTGGTGTTTTAGACTTCCATTTTTGGTTAGTG

Insertion site


Left flankDirect repeatRight flankDR Length
CATTTCTTTCGATTTCCCTTCTTTGCGC8
GGCGGGAAGGAAAGCATCCGGCCCCGCA8
AGCCGAATCGTGCTTGGGATATCATCCA8
TCAGTAATGATGCTGATGAAGAACACGC8
ATATATCAAGCATGAATGAGGGTTATTG8
CCTGAAGTCAAGGAAACGATGCCTTGCG8
AGTAGACAGCCAAAAACGAAAAAACCCG8
CTGCCAATGCCTAAGGACAAGTCAGCGT8
CGAGTAAGCCGAATACCCCGCAAATCTG8

DNA sequence

GGCCTATAGGAACTAAACGTGGTGTTTATGATGCCGGTCAGGCCAAGTGGCTGTAGGCGTGTCGGCGTGCGTTTAACGTGACGTGTCGTTAAAAAGGCCG
TCCGAGTGCCGGTCCCTGCGGTTGCATGGTGCCATGCGGACGAAATCGAAAAGGGCGCGCCTGTGCCCGGTATGCGGCGGGCCGATGAGGAAGAACGGCA
GGACCAAGGCGGGGGCGCAGCGATGGAAATGCCCGGGATGCGCGCTTTCCACGACGGCGCCGAGACGTGACGGGCGCAGGCGCGCGCAGCTGGGGGAATT
CCTCGACTGGCTGCTGTCCGGCAAACGCCAGTGGGACATGGACGGGGCGGACGGGCGGGCGTTCCGCAAGCGCGTCGGCTGGTGCTGGCGCCTCCGCCCG
GCCATACCGCCGGACGGCGTCGTCCGCCACGTCATCATGGCCGACGGCACGTACATGGCCCATGGCTGGTGTCTGCTCATAGCCATCGACGGGCTGACCG
GCGAACCCGTGGCATTCCAATGGTGCGGGCACGAGTCCACCGCCGCGTACGCCGCGCTGTTCTCGCGGATACCGGCGCCCGACGTCCTCGTCTCGGACGG
GCTCCGCGGCATCGAGAGGGCCTGCGCCCAGGCCTGGCCGCGCACGAGGATCCAACGCTGCCTGGTGCACGTGCAGCGCAACACCCGCGCCGACCTGACG
TCCAGGCCCAGGCTCCAGGCGGGCAGGGAGCTCAAGGAACTGTCCGATGCCCTGACCTCCGTCCGGACGGCCGGGCAGGCCGCGCAATGGGCGGGTGCGC
TGAACGCGTGGCACGGGCGGTGGAGGGATTTCATCGCCGAACGCACCTGGGCGAAGGACGATCCCGCCAATCCCAAGGCCTCCAGGCAGGAATGGTGGTG
GACGCACGGGGAACTGCGCCGCTGCTACCGCCGGCTCGAGCGATTGTTCAGGGAGGGCAAGCTCTTCGCGTTCCTGGACCCCGGGCTGCTGGCGGGCGGT
CCCGTGCCGCGTACCAGCAACCTGCTGGAGGGCGGGATCAACTCGCTGGTCAAACGCACCCTCCTCGAACACCACGGCCTGCCCGAGGAACACATGAGGC
GCGCATGCGAATGGAGGTGCTACATGCGCAGCCACGCGCCGGACCCATATGCCCTGATCGCGGGACTGGAACAGGCCGCCGGCACACAGGACCGGGAGCC
GACGGACGGGAACGACGACGGATACGGTGATGGAATCCAGGCGAACAACCACGACGATCCGACGAACGAACCTGGATTCTACATCCGCAAAGGACACGTC
CACTAACCAAAAATGGAAGTCTAAAACACCACGTTTAGTTCCTATAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa1341306+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRTKSKRARLCPVCGGPMRKNGRTKAGAQRWKCPGCALSTTAPRRDGRRRAQLGEFLDWLLSGKRQWDMDGADGRAFRKRVGWCWRLRPAIPPDGVVRHV
IMADGTYMAHGWCLLIAIDGLTGEPVAFQWCGHESTAAYAALFSRIPAPDVLVSDGLRGIERACAQAWPRTRIQRCLVHVQRNTRADLTSRPRLQAGREL
KELSDALTSVRTAGQAAQWAGALNAWHGRWRDFIAERTWAKDDPANPKASRQEWWWTHGELRRCYRRLERLFREGKLFAFLDPGLLAGGPVPRTSNLLEG
GINSLVKRTLLEHHGLPEEHMRRACEWRCYMRSHAPDPYALIAGLEQAAGTQDREPTDGNDDGYGDGIQANNHDDPTNEPGFYIRKGHVH

 

Blast result :
Comments
ISBith1 is 75% aa similar to ISBibr1.
References
1] ISfinder annotation (2013)
2] Jans,C., Lacroix,C., Follador,R. and Stevens,M.J.A. (2013) Direct submission GenBank.