ISBlo16
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014169 | ND | Bifidobacterium longum | Bifidobacterium longum subsp. longum JDM301 Bifidobacterium longum subsp. longum KACC 91563 Bifidobacterium longum subsp. infantis ATCC 15697 Bifidobacterium longum subsp. infantis JCM 1222 |
DNA section
IS Length : 1323 bp
Ends
IR Length : 26
IRL : GGCCTATAGGAACTTTTGTGGTGCTTATAACCGTGGCCCGGCCTTGTGGG
IRR : GGCCTATAGGAACTTTTGTGGTGCTTTAGACTGGTTTTCGTTGTCAGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGAAGGACTCGAACAGCC | GAACACAGACCCTGTGCGAG | 0 | |
TATCTCGCCGC | C/ATAAACTCGG | TTTGAACTGGA | 12 |
CCGCTCACAGC | CAAATGTC | CCCCCGAGGC | 8 |
CCTGTTTGGG | GCAAACGC | ATACGACGGG | 8 |
CCTGTTTGGG | GCAAACGC | ATACGACGGG | 8 |
DNA sequence
GGCCTATAGGAACTTTTGTGGTGCTTATAACCGTGGCCCGGCCTTGTGGGAGCAGGCGTGTCGGCCTGTCATTTTTGTCGCGTGGAAAATGATGCGCCCC
CGGTGGTGGGCTGGATGGCGTGAGAACACCATCCAGCAAAGCGAAGAGATGCCCCGTGTGCGGGCGTGCGATGAAGAAGAACGGGCGGACCGGCAAGGGC
GTCCAGCGGTGGAAATGCCCGGCCTGCCGGTTGAGCTCGACGATGCCGCAGCGGCGGCGCAGGCGGGAGCGGACGCTGGAGGAGTTCCTTTCCTGGCTGC
CGGGGCCGTCATCCCAAAGGGCGGCGGACCCCGCGGGCGACGCCCGCGCCCTGCGCAAACGAATCGCATGGTGCTGGCGCATCCGCCCGCGCATCGCCCC
GCCGGACGCCAGGCGCCACACGGTCATGGCGGACGGCACGTACATGGGCCACGGCTGGTGCCTGATCATCGCCATCGACGGGCAAACCGGCGAGGTGCTG
GACTGGCAGTGGTGCGCGCACGAGTCCAAGGCCGCATACCTGGCCCTGTTCTCCCGGCTTCCCGCGCCGGACGTGCTCATCACCGACGGGCTGCGCGGCG
CGGAGGCGGCGTGCACGCAGGCGTGGCCGGGAACGAGGATCCAGCGCTGCCTGGTGCACGTGCAGCGCAACACGAGGACGGACCTGACGTCCAGGCCCAG
GCTCCAGGCCGGCCGCGAGCTGAAGAGGCTGTCCGACAGGCTCACCTCGGTCGAGACGGCCGGGCAGGCCGTCAGGTGGGGCGAGGCCCTCAACGCATGG
CACGAACGGTGGAAGGACTTCATCGCCGAACGCACCTACGCGCGCGACGACCCGTCCAACCCCAAGGCGTCGAGGCACCGGTGGCGGTGGACGCACGAGG
AGCTGCGGCGCTGCTACCGGCGGCTGGAGAGGCTGTTCCGCGAGGGCAGGCTGTTCGCCTATCTCGAGCCGGAACTGCTGAAGGGCGGTCCGGTGGCGCG
CACCACGAACCGGCTGGAGGGCGGCGTCAACTCGGTCGTCAAGGACGTATTGCGCAACCATCGCGGGCTGCCCGAGGAGCACATGCGCCGCGCGTGCGAA
TGGGTATGCTACATGAAGACCGCGCACCCACGACCGGAGTCATTCATCCCCGACGCCCTGCGGAAGGGCGAAAAGGCAACGACGCCCGAACCGGACGACA
GCGTCGCGCCCGCATACGGGACCGGCATCGACTGGAACGAATTCCACACCACCACGCGATACCCCAACACCACCGACTGACAACGAAAACCAGTCTAAAG
CACCACAAAAGTTCCTATAGGCC
CGGTGGTGGGCTGGATGGCGTGAGAACACCATCCAGCAAAGCGAAGAGATGCCCCGTGTGCGGGCGTGCGATGAAGAAGAACGGGCGGACCGGCAAGGGC
GTCCAGCGGTGGAAATGCCCGGCCTGCCGGTTGAGCTCGACGATGCCGCAGCGGCGGCGCAGGCGGGAGCGGACGCTGGAGGAGTTCCTTTCCTGGCTGC
CGGGGCCGTCATCCCAAAGGGCGGCGGACCCCGCGGGCGACGCCCGCGCCCTGCGCAAACGAATCGCATGGTGCTGGCGCATCCGCCCGCGCATCGCCCC
GCCGGACGCCAGGCGCCACACGGTCATGGCGGACGGCACGTACATGGGCCACGGCTGGTGCCTGATCATCGCCATCGACGGGCAAACCGGCGAGGTGCTG
GACTGGCAGTGGTGCGCGCACGAGTCCAAGGCCGCATACCTGGCCCTGTTCTCCCGGCTTCCCGCGCCGGACGTGCTCATCACCGACGGGCTGCGCGGCG
CGGAGGCGGCGTGCACGCAGGCGTGGCCGGGAACGAGGATCCAGCGCTGCCTGGTGCACGTGCAGCGCAACACGAGGACGGACCTGACGTCCAGGCCCAG
GCTCCAGGCCGGCCGCGAGCTGAAGAGGCTGTCCGACAGGCTCACCTCGGTCGAGACGGCCGGGCAGGCCGTCAGGTGGGGCGAGGCCCTCAACGCATGG
CACGAACGGTGGAAGGACTTCATCGCCGAACGCACCTACGCGCGCGACGACCCGTCCAACCCCAAGGCGTCGAGGCACCGGTGGCGGTGGACGCACGAGG
AGCTGCGGCGCTGCTACCGGCGGCTGGAGAGGCTGTTCCGCGAGGGCAGGCTGTTCGCCTATCTCGAGCCGGAACTGCTGAAGGGCGGTCCGGTGGCGCG
CACCACGAACCGGCTGGAGGGCGGCGTCAACTCGGTCGTCAAGGACGTATTGCGCAACCATCGCGGGCTGCCCGAGGAGCACATGCGCCGCGCGTGCGAA
TGGGTATGCTACATGAAGACCGCGCACCCACGACCGGAGTCATTCATCCCCGACGCCCTGCGGAAGGGCGAAAAGGCAACGACGCCCGAACCGGACGACA
GCGTCGCGCCCGCATACGGGACCGGCATCGACTGGAACGAATTCCACACCACCACGCGATACCCCAACACCACCGACTGACAACGAAAACCAGTCTAAAG
CACCACAAAAGTTCCTATAGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1161 bp | 386 aa | 120 | 1280 | + | No |
Chemistry : DDE
ORF sequence :
MRTPSSKAKRCPVCGRAMKKNGRTGKGVQRWKCPACRLSSTMPQRRRRRERTLEEFLSWLPGPSSQRAADPAGDARALRKRIAWCWRIRPRIAPPDARRH
TVMADGTYMGHGWCLIIAIDGQTGEVLDWQWCAHESKAAYLALFSRLPAPDVLITDGLRGAEAACTQAWPGTRIQRCLVHVQRNTRTDLTSRPRLQAGRE
LKRLSDRLTSVETAGQAVRWGEALNAWHERWKDFIAERTYARDDPSNPKASRHRWRWTHEELRRCYRRLERLFREGRLFAYLEPELLKGGPVARTTNRLE
GGVNSVVKDVLRNHRGLPEEHMRRACEWVCYMKTAHPRPESFIPDALRKGEKATTPEPDDSVAPAYGTGIDWNEFHTTTRYPNTTD
TVMADGTYMGHGWCLIIAIDGQTGEVLDWQWCAHESKAAYLALFSRLPAPDVLITDGLRGAEAACTQAWPGTRIQRCLVHVQRNTRTDLTSRPRLQAGRE
LKRLSDRLTSVETAGQAVRWGEALNAWHERWKDFIAERTYARDDPSNPKASRHRWRWTHEELRRCYRRLERLFREGRLFAYLEPELLKGGPVARTTNRLE
GGVNSVVKDVLRNHRGLPEEHMRRACEWVCYMKTAHPRPESFIPDALRKGEKATTPEPDDSVAPAYGTGIDWNEFHTTTRYPNTTD
Blast result :
Comments
ISBlo16 is 80% aa similar to ISBibr1.
References
1] ISfinder annotation (2013)
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) J. Bacteriol. 192 (15), 4076-4077.
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) J. Bacteriol. 192 (15), 4076-4077.