ISBlo16

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014169 ND Bifidobacterium longum
Bifidobacterium longum subsp. longum JDM301
Bifidobacterium longum subsp. longum KACC 91563
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium longum subsp. infantis JCM 1222
DNA section
IS Length : 1323 bp

Ends


IR Length : 26

IRL : GGCCTATAGGAACTTTTGTGGTGCTTATAACCGTGGCCCGGCCTTGTGGG
IRR : GGCCTATAGGAACTTTTGTGGTGCTTTAGACTGGTTTTCGTTGTCAGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGAAGGACTCGAACAGCCGAACACAGACCCTGTGCGAG0
TATCTCGCCGCC/ATAAACTCGGTTTGAACTGGA12
CCGCTCACAGCCAAATGTCCCCCCGAGGC8
CCTGTTTGGGGCAAACGCATACGACGGG8
CCTGTTTGGGGCAAACGCATACGACGGG8

DNA sequence

GGCCTATAGGAACTTTTGTGGTGCTTATAACCGTGGCCCGGCCTTGTGGGAGCAGGCGTGTCGGCCTGTCATTTTTGTCGCGTGGAAAATGATGCGCCCC
CGGTGGTGGGCTGGATGGCGTGAGAACACCATCCAGCAAAGCGAAGAGATGCCCCGTGTGCGGGCGTGCGATGAAGAAGAACGGGCGGACCGGCAAGGGC
GTCCAGCGGTGGAAATGCCCGGCCTGCCGGTTGAGCTCGACGATGCCGCAGCGGCGGCGCAGGCGGGAGCGGACGCTGGAGGAGTTCCTTTCCTGGCTGC
CGGGGCCGTCATCCCAAAGGGCGGCGGACCCCGCGGGCGACGCCCGCGCCCTGCGCAAACGAATCGCATGGTGCTGGCGCATCCGCCCGCGCATCGCCCC
GCCGGACGCCAGGCGCCACACGGTCATGGCGGACGGCACGTACATGGGCCACGGCTGGTGCCTGATCATCGCCATCGACGGGCAAACCGGCGAGGTGCTG
GACTGGCAGTGGTGCGCGCACGAGTCCAAGGCCGCATACCTGGCCCTGTTCTCCCGGCTTCCCGCGCCGGACGTGCTCATCACCGACGGGCTGCGCGGCG
CGGAGGCGGCGTGCACGCAGGCGTGGCCGGGAACGAGGATCCAGCGCTGCCTGGTGCACGTGCAGCGCAACACGAGGACGGACCTGACGTCCAGGCCCAG
GCTCCAGGCCGGCCGCGAGCTGAAGAGGCTGTCCGACAGGCTCACCTCGGTCGAGACGGCCGGGCAGGCCGTCAGGTGGGGCGAGGCCCTCAACGCATGG
CACGAACGGTGGAAGGACTTCATCGCCGAACGCACCTACGCGCGCGACGACCCGTCCAACCCCAAGGCGTCGAGGCACCGGTGGCGGTGGACGCACGAGG
AGCTGCGGCGCTGCTACCGGCGGCTGGAGAGGCTGTTCCGCGAGGGCAGGCTGTTCGCCTATCTCGAGCCGGAACTGCTGAAGGGCGGTCCGGTGGCGCG
CACCACGAACCGGCTGGAGGGCGGCGTCAACTCGGTCGTCAAGGACGTATTGCGCAACCATCGCGGGCTGCCCGAGGAGCACATGCGCCGCGCGTGCGAA
TGGGTATGCTACATGAAGACCGCGCACCCACGACCGGAGTCATTCATCCCCGACGCCCTGCGGAAGGGCGAAAAGGCAACGACGCCCGAACCGGACGACA
GCGTCGCGCCCGCATACGGGACCGGCATCGACTGGAACGAATTCCACACCACCACGCGATACCCCAACACCACCGACTGACAACGAAAACCAGTCTAAAG
CACCACAAAAGTTCCTATAGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa1201280+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRTPSSKAKRCPVCGRAMKKNGRTGKGVQRWKCPACRLSSTMPQRRRRRERTLEEFLSWLPGPSSQRAADPAGDARALRKRIAWCWRIRPRIAPPDARRH
TVMADGTYMGHGWCLIIAIDGQTGEVLDWQWCAHESKAAYLALFSRLPAPDVLITDGLRGAEAACTQAWPGTRIQRCLVHVQRNTRTDLTSRPRLQAGRE
LKRLSDRLTSVETAGQAVRWGEALNAWHERWKDFIAERTYARDDPSNPKASRHRWRWTHEELRRCYRRLERLFREGRLFAYLEPELLKGGPVARTTNRLE
GGVNSVVKDVLRNHRGLPEEHMRRACEWVCYMKTAHPRPESFIPDALRKGEKATTPEPDDSVAPAYGTGIDWNEFHTTTRYPNTTD

 

Blast result :
Comments
ISBlo16 is 80% aa similar to ISBibr1.
References
1] ISfinder annotation (2013)
2] Wei,Y.X., Zhang,Z.Y., Liu,C., Zhu,Y.Z., Zhu,Y.Q., Zheng,H., Zhao,G.P., Wang,S. and Guo,X.K. (2010) J. Bacteriol. 192 (15), 4076-4077.