ISGsi1

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_BANU01000008 ND Gordonia sihwensis
Gordonia sihwensis NBRC 108236
DNA section
IS Length : 1310 bp

Ends


IR Length : 24/25

IRL : GGGTTAAAGGCCAACATGTGTGTACAGATCCGCTGATTTCTGATGCCTGA
IRR : GGGTTAAAGGCCAAAATGTGTGTACGGCCCGGGCGTGGCGTCGGGGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
AACAGCGGAACCGGAGGCTCGCCGCGTA8

DNA sequence

GGGTTAAAGGCCAACATGTGTGTACAGATCCGCTGATTTCTGATGCCTGACCTCGGGTGATGGTGGGTCGAACATGCTTTGAAAGCATGTTCGGTGTCAG
GTTCTCGGAATTCCCCATCCTGTGGTGTATGCGGTCGCAAGCTCGTCAAGAACGGAACCACCAGCGCCGGCCGCACCCGCTGGCGCTGCAAGGACTGCGG
CGCCTCCAGCACCCAGAAGCGCCCCGATGTCACCCGCAAAGCCGAGCTCACCGCGTTCCACACCTGGCTCCTGCACGGCCGACAGCCCGACCACGTCATC
GCCCGCACCTTCCGCCGCTCACGCTCCTGGTGCTGGAACATCGAAGTCCCGCCACCACCGCCGCTGACCGAGCCGGCACAGGTGTTGATGCTCGATGGCA
CCTACTTCCAATCCTGGTGCCTGCTGATCGCCTTCGACGGCACCCACGTCGTCGACTGGCAATGGTGTGACCGCGAGAAGAAGATCGCCTGGCAGCAGAT
CCTGCAACGCCAACCCGCCCCACGCATCGCGGTCATCGACGGCGGCCGCGGGCTGCTCTCAGCGATCTCCGACGACTGGCCCACCACCCGAGTCCAACGC
TGCTACTTCCACATCTTCCAGACCATCCGCCGCCACCACACGTACAACCCGAGAACTGACGCAGCACGCCAAATCATCTCTCTGACAACAGCTTTGATGA
ACATCCGCAACGCCGACCAGGCCGTGCTGTGGCTGCAGGCCTACAACGACTGGGAGCATGAACACGACCGATTCCTCCGGCATCGGACCTACGCCCGCCC
GCACACCGTCCGCCCCCGAGGCGTCGCCGAGGCCAGCACCTGGTGGTACACCCACCGCGACCTCCGCCGCACCCGCGGCCTGTTCCGCAAGCTCATCGCC
GCCGAGCACCTGTTCACCTGGATCGACCCCCGCCTGACCGACGAGGACCACCCGCTCCCGCGGACCACCTCACCTCTCGAAGGCGGCCCCAACAAGGCCC
TCAAGGACCTGTTCCGCACCCATCGAGGGTTCCTCACCGAACACGCCCGCCGGGCCGCCGAATGGAAACTGAACAGCCTCACCGCCCACCCACACGATCC
GTGGAGCCTGGTCCGCGCCGAGCACTACAACCCACCGCCGCCACGACCGAAGGAAACTCCGCTCGAAGACGAGCAGATCGGACCGGCCGCCTACGACACC
GGCTTCAACTGGGAAGACGGCAACGGTATCCAACACGGCTGGGGAGGACGAAACCGATAAACCACCCCGACGCCACGCCCGGGCCGTACACACATTTTGG
CCTTTAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa941260+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSGSRNSPSCGVCGRKLVKNGTTSAGRTRWRCKDCGASSTQKRPDVTRKAELTAFHTWLLHGRQPDHVIARTFRRSRSWCWNIEVPPPPPLTEPAQVLML
DGTYFQSWCLLIAFDGTHVVDWQWCDREKKIAWQQILQRQPAPRIAVIDGGRGLLSAISDDWPTTRVQRCYFHIFQTIRRHHTYNPRTDAARQIISLTTA
LMNIRNADQAVLWLQAYNDWEHEHDRFLRHRTYARPHTVRPRGVAEASTWWYTHRDLRRTRGLFRKLIAAEHLFTWIDPRLTDEDHPLPRTTSPLEGGPN
KALKDLFRTHRGFLTEHARRAAEWKLNSLTAHPHDPWSLVRAEHYNPPPPRPKETPLEDEQIGPAAYDTGFNWEDGNGIQHGWGGRNR

 

Blast result :
Comments
ISGsi1 is 52% aa similar to ISAar5.
References
1] ISfinder annotation (2013)
2]Yoshida,I., Hosoyama,A., Tsuchikane,K., Ando,Y., Baba,S., Ohji,S., Hamada,M., Tamura,T., Yamazoe,A., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.