ISGsi1
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_BANU01000008 | ND | Gordonia sihwensis | Gordonia sihwensis NBRC 108236 |
DNA section
IS Length : 1310 bp
Ends
IR Length : 24/25
IRL : GGGTTAAAGGCCAACATGTGTGTACAGATCCGCTGATTTCTGATGCCTGA
IRR : GGGTTAAAGGCCAAAATGTGTGTACGGCCCGGGCGTGGCGTCGGGGTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACAGCGGAA | CCGGAGGC | TCGCCGCGTA | 8 |
DNA sequence
GGGTTAAAGGCCAACATGTGTGTACAGATCCGCTGATTTCTGATGCCTGACCTCGGGTGATGGTGGGTCGAACATGCTTTGAAAGCATGTTCGGTGTCAG
GTTCTCGGAATTCCCCATCCTGTGGTGTATGCGGTCGCAAGCTCGTCAAGAACGGAACCACCAGCGCCGGCCGCACCCGCTGGCGCTGCAAGGACTGCGG
CGCCTCCAGCACCCAGAAGCGCCCCGATGTCACCCGCAAAGCCGAGCTCACCGCGTTCCACACCTGGCTCCTGCACGGCCGACAGCCCGACCACGTCATC
GCCCGCACCTTCCGCCGCTCACGCTCCTGGTGCTGGAACATCGAAGTCCCGCCACCACCGCCGCTGACCGAGCCGGCACAGGTGTTGATGCTCGATGGCA
CCTACTTCCAATCCTGGTGCCTGCTGATCGCCTTCGACGGCACCCACGTCGTCGACTGGCAATGGTGTGACCGCGAGAAGAAGATCGCCTGGCAGCAGAT
CCTGCAACGCCAACCCGCCCCACGCATCGCGGTCATCGACGGCGGCCGCGGGCTGCTCTCAGCGATCTCCGACGACTGGCCCACCACCCGAGTCCAACGC
TGCTACTTCCACATCTTCCAGACCATCCGCCGCCACCACACGTACAACCCGAGAACTGACGCAGCACGCCAAATCATCTCTCTGACAACAGCTTTGATGA
ACATCCGCAACGCCGACCAGGCCGTGCTGTGGCTGCAGGCCTACAACGACTGGGAGCATGAACACGACCGATTCCTCCGGCATCGGACCTACGCCCGCCC
GCACACCGTCCGCCCCCGAGGCGTCGCCGAGGCCAGCACCTGGTGGTACACCCACCGCGACCTCCGCCGCACCCGCGGCCTGTTCCGCAAGCTCATCGCC
GCCGAGCACCTGTTCACCTGGATCGACCCCCGCCTGACCGACGAGGACCACCCGCTCCCGCGGACCACCTCACCTCTCGAAGGCGGCCCCAACAAGGCCC
TCAAGGACCTGTTCCGCACCCATCGAGGGTTCCTCACCGAACACGCCCGCCGGGCCGCCGAATGGAAACTGAACAGCCTCACCGCCCACCCACACGATCC
GTGGAGCCTGGTCCGCGCCGAGCACTACAACCCACCGCCGCCACGACCGAAGGAAACTCCGCTCGAAGACGAGCAGATCGGACCGGCCGCCTACGACACC
GGCTTCAACTGGGAAGACGGCAACGGTATCCAACACGGCTGGGGAGGACGAAACCGATAAACCACCCCGACGCCACGCCCGGGCCGTACACACATTTTGG
CCTTTAACCC
GTTCTCGGAATTCCCCATCCTGTGGTGTATGCGGTCGCAAGCTCGTCAAGAACGGAACCACCAGCGCCGGCCGCACCCGCTGGCGCTGCAAGGACTGCGG
CGCCTCCAGCACCCAGAAGCGCCCCGATGTCACCCGCAAAGCCGAGCTCACCGCGTTCCACACCTGGCTCCTGCACGGCCGACAGCCCGACCACGTCATC
GCCCGCACCTTCCGCCGCTCACGCTCCTGGTGCTGGAACATCGAAGTCCCGCCACCACCGCCGCTGACCGAGCCGGCACAGGTGTTGATGCTCGATGGCA
CCTACTTCCAATCCTGGTGCCTGCTGATCGCCTTCGACGGCACCCACGTCGTCGACTGGCAATGGTGTGACCGCGAGAAGAAGATCGCCTGGCAGCAGAT
CCTGCAACGCCAACCCGCCCCACGCATCGCGGTCATCGACGGCGGCCGCGGGCTGCTCTCAGCGATCTCCGACGACTGGCCCACCACCCGAGTCCAACGC
TGCTACTTCCACATCTTCCAGACCATCCGCCGCCACCACACGTACAACCCGAGAACTGACGCAGCACGCCAAATCATCTCTCTGACAACAGCTTTGATGA
ACATCCGCAACGCCGACCAGGCCGTGCTGTGGCTGCAGGCCTACAACGACTGGGAGCATGAACACGACCGATTCCTCCGGCATCGGACCTACGCCCGCCC
GCACACCGTCCGCCCCCGAGGCGTCGCCGAGGCCAGCACCTGGTGGTACACCCACCGCGACCTCCGCCGCACCCGCGGCCTGTTCCGCAAGCTCATCGCC
GCCGAGCACCTGTTCACCTGGATCGACCCCCGCCTGACCGACGAGGACCACCCGCTCCCGCGGACCACCTCACCTCTCGAAGGCGGCCCCAACAAGGCCC
TCAAGGACCTGTTCCGCACCCATCGAGGGTTCCTCACCGAACACGCCCGCCGGGCCGCCGAATGGAAACTGAACAGCCTCACCGCCCACCCACACGATCC
GTGGAGCCTGGTCCGCGCCGAGCACTACAACCCACCGCCGCCACGACCGAAGGAAACTCCGCTCGAAGACGAGCAGATCGGACCGGCCGCCTACGACACC
GGCTTCAACTGGGAAGACGGCAACGGTATCCAACACGGCTGGGGAGGACGAAACCGATAAACCACCCCGACGCCACGCCCGGGCCGTACACACATTTTGG
CCTTTAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 94 | 1260 | + | No |
Chemistry : DDE
ORF sequence :
MSGSRNSPSCGVCGRKLVKNGTTSAGRTRWRCKDCGASSTQKRPDVTRKAELTAFHTWLLHGRQPDHVIARTFRRSRSWCWNIEVPPPPPLTEPAQVLML
DGTYFQSWCLLIAFDGTHVVDWQWCDREKKIAWQQILQRQPAPRIAVIDGGRGLLSAISDDWPTTRVQRCYFHIFQTIRRHHTYNPRTDAARQIISLTTA
LMNIRNADQAVLWLQAYNDWEHEHDRFLRHRTYARPHTVRPRGVAEASTWWYTHRDLRRTRGLFRKLIAAEHLFTWIDPRLTDEDHPLPRTTSPLEGGPN
KALKDLFRTHRGFLTEHARRAAEWKLNSLTAHPHDPWSLVRAEHYNPPPPRPKETPLEDEQIGPAAYDTGFNWEDGNGIQHGWGGRNR
DGTYFQSWCLLIAFDGTHVVDWQWCDREKKIAWQQILQRQPAPRIAVIDGGRGLLSAISDDWPTTRVQRCYFHIFQTIRRHHTYNPRTDAARQIISLTTA
LMNIRNADQAVLWLQAYNDWEHEHDRFLRHRTYARPHTVRPRGVAEASTWWYTHRDLRRTRGLFRKLIAAEHLFTWIDPRLTDEDHPLPRTTSPLEGGPN
KALKDLFRTHRGFLTEHARRAAEWKLNSLTAHPHDPWSLVRAEHYNPPPPRPKETPLEDEQIGPAAYDTGFNWEDGNGIQHGWGGRNR
Blast result :
Comments
ISGsi1 is 52% aa similar to ISAar5.
References
1] ISfinder annotation (2013)
2]Yoshida,I., Hosoyama,A., Tsuchikane,K., Ando,Y., Baba,S., Ohji,S., Hamada,M., Tamura,T., Yamazoe,A., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.
2]Yoshida,I., Hosoyama,A., Tsuchikane,K., Ando,Y., Baba,S., Ohji,S., Hamada,M., Tamura,T., Yamazoe,A., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.