ISCau1

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012590 ND Corynebacterium aurimucosum
Corynebacterium aurimucosum ATCC 700975
DNA section
IS Length : 1449 bp

Ends


IR Length : 26

IRL : GGGCTTAAGGGACATTTCGTGTGGATAAACCGATACGGATTCCTGGGGCA
IRR : GGGCTTAAGGGACATTTCGTGTGGATTTGCGGCGTGTCGCGCTAAGGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTACTTTGAAATCCACAC0
AGCAACCACTGAGGCGAGGGCCTAAGC7
CCCTTAACCCGGCCTAAACG0

DNA sequence

GGGCTTAAGGGACATTTCGTGTGGATAAACCGATACGGATTCCTGGGGCAGCCTGGGATAATACGGTGATCTTGATTTTGAATCGGTTCCAACGGCCCGA
TCTGTGAAATCAACACCGGATAGTCCTAGGTCTGTGATAAGGGGACTGCTGCTGGTGCGGTAAGGCCAATTCCTATGGCTAATAGGAATCGGCCGTCGTG
TGACATGTGCGGCCACGGATTGGTTAAGAACGGCAAAACCGCGGCAGGAACCCAACGCTGGTTGTGTCCTCAGTGCAACGTTTCATCGATTAATACCCGC
GCACACACCAGCGATATTCGGCACTTCAAAATCTTTATCGACTGGATTCTTTCCGGCGAATCCGCAGACCATTTAGCCAAACGCCTTGGGGTAACAAGGC
GGACTTTAACCCGGTGGTTCAAGCTGCTGTGGTTTATCACCGTGCCCACGACTACTGACCCCTATCGGGTTTATGACCAGGTCTTTATCGACGGCACCTA
CTTCCACAAAAAATGCCTGCTGGTAGCCTGCACCGAAACACACGTCATCGCCTGGCACTGGTGCCTGCGTGAAAGCTCCTACGAGTACCTGAAACTGCTC
GACAAAATCGCGCAACCACTCATCGTCACCACCGACGGGGCAGGCGGAGCACTCAAGGCACTGCGCATTAAATGGCCCGACGTTGCCATCCAGCGTTGCT
TAGTCCACGTCCAGCGCAACACTTTTGCTGATATCAGCCGCAACCCGATTCACCCAGCGCATAAAGCAATCCGGAAACTGGGCTACATGCTCGTCCAGGT
ACACAACCGTGAAGATGCTGCGCGGTTTACTGCTGCAGTCCACCACACCCGCATTACCTTTGCTGATTGGCTTAAAGAGCGAACCTACCGCAGTGCTATA
CCAGCAGGCCAAGTACCGAAATGGGTCAGCCCCAACCAGAAATGGTGGTACACCCACCGCAACGCCCGCAGGGCTCTAAAACGGCTAGAAAAGCTTATTC
ACGCTGGACAATTATTTACTTTCCTTGACCCGCCTGAAGGTGTCACACAGGACTTAAAAGCCACCACAAACCTGCTGGAAGGCGGCATCAACAAACAACT
CAAAGACTTAGCAGGAAACCATCGGGGCATGTTCGATGAGCATCAGCGCATCACCATGGACTGGTGGCTCTACACCCACACCGAAGACCCGGTAGCGCCA
CTGGAGTTAACCAAGCAACAAGACTTCGGACGCCAAGGAGAAAAAGCAGCACGCGCAGCCTGGGCAAAAGAAGAACTCACACGACGTGGCCACCCAGACG
GACGACCAGCCACATACGACACCCACATCGACAACGAATGGAACCCCAGCTTAGGCATAAGAAAAGGCTGGGCCGGACGCTCCTAAATCCACACGAAATG
TCCCTTAGCGCGACACGCCGCAAATCCACACGAAATGTCCCTTAAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa1751386+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MANRNRPSCDMCGHGLVKNGKTAAGTQRWLCPQCNVSSINTRAHTSDIRHFKIFIDWILSGESADHLAKRLGVTRRTLTRWFKLLWFITVPTTTDPYRVY
DQVFIDGTYFHKKCLLVACTETHVIAWHWCLRESSYEYLKLLDKIAQPLIVTTDGAGGALKALRIKWPDVAIQRCLVHVQRNTFADISRNPIHPAHKAIR
KLGYMLVQVHNREDAARFTAAVHHTRITFADWLKERTYRSAIPAGQVPKWVSPNQKWWYTHRNARRALKRLEKLIHAGQLFTFLDPPEGVTQDLKATTNL
LEGGINKQLKDLAGNHRGMFDEHQRITMDWWLYTHTEDPVAPLELTKQQDFGRQGEKAARAAWAKEELTRRGHPDGRPATYDTHIDNEWNPSLGIRKGWA
GRS

 

Blast result :
Comments
ISCau1 is 59% aa similar to ISCre1.
References
1] ISfinder annotation (2013)
2] Trost,E., Gotker,S., Schneider,J., Schneiker-Bekel,S., Szczepanowski,R., Tilker,A., Viehoever,P., Arnold,W., Bekel,T., Blom,J., Gartemann,K.H., Linke,B., Goesmann,A., Puhler,A., Shukla,S.K. and Tauch,A. (2010) BMC Genomics 11, 91.