ISCau1
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012590 | ND | Corynebacterium aurimucosum | Corynebacterium aurimucosum ATCC 700975 |
DNA section
IS Length : 1449 bp
Ends
IR Length : 26
IRL : GGGCTTAAGGGACATTTCGTGTGGATAAACCGATACGGATTCCTGGGGCA
IRR : GGGCTTAAGGGACATTTCGTGTGGATTTGCGGCGTGTCGCGCTAAGGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTACTTTG | AAATCCACAC | 0 | |
AGCAACCACT | GAGGCGA | GGGCCTAAGC | 7 |
CCCTTAACCC | GGCCTAAACG | 0 |
DNA sequence
GGGCTTAAGGGACATTTCGTGTGGATAAACCGATACGGATTCCTGGGGCAGCCTGGGATAATACGGTGATCTTGATTTTGAATCGGTTCCAACGGCCCGA
TCTGTGAAATCAACACCGGATAGTCCTAGGTCTGTGATAAGGGGACTGCTGCTGGTGCGGTAAGGCCAATTCCTATGGCTAATAGGAATCGGCCGTCGTG
TGACATGTGCGGCCACGGATTGGTTAAGAACGGCAAAACCGCGGCAGGAACCCAACGCTGGTTGTGTCCTCAGTGCAACGTTTCATCGATTAATACCCGC
GCACACACCAGCGATATTCGGCACTTCAAAATCTTTATCGACTGGATTCTTTCCGGCGAATCCGCAGACCATTTAGCCAAACGCCTTGGGGTAACAAGGC
GGACTTTAACCCGGTGGTTCAAGCTGCTGTGGTTTATCACCGTGCCCACGACTACTGACCCCTATCGGGTTTATGACCAGGTCTTTATCGACGGCACCTA
CTTCCACAAAAAATGCCTGCTGGTAGCCTGCACCGAAACACACGTCATCGCCTGGCACTGGTGCCTGCGTGAAAGCTCCTACGAGTACCTGAAACTGCTC
GACAAAATCGCGCAACCACTCATCGTCACCACCGACGGGGCAGGCGGAGCACTCAAGGCACTGCGCATTAAATGGCCCGACGTTGCCATCCAGCGTTGCT
TAGTCCACGTCCAGCGCAACACTTTTGCTGATATCAGCCGCAACCCGATTCACCCAGCGCATAAAGCAATCCGGAAACTGGGCTACATGCTCGTCCAGGT
ACACAACCGTGAAGATGCTGCGCGGTTTACTGCTGCAGTCCACCACACCCGCATTACCTTTGCTGATTGGCTTAAAGAGCGAACCTACCGCAGTGCTATA
CCAGCAGGCCAAGTACCGAAATGGGTCAGCCCCAACCAGAAATGGTGGTACACCCACCGCAACGCCCGCAGGGCTCTAAAACGGCTAGAAAAGCTTATTC
ACGCTGGACAATTATTTACTTTCCTTGACCCGCCTGAAGGTGTCACACAGGACTTAAAAGCCACCACAAACCTGCTGGAAGGCGGCATCAACAAACAACT
CAAAGACTTAGCAGGAAACCATCGGGGCATGTTCGATGAGCATCAGCGCATCACCATGGACTGGTGGCTCTACACCCACACCGAAGACCCGGTAGCGCCA
CTGGAGTTAACCAAGCAACAAGACTTCGGACGCCAAGGAGAAAAAGCAGCACGCGCAGCCTGGGCAAAAGAAGAACTCACACGACGTGGCCACCCAGACG
GACGACCAGCCACATACGACACCCACATCGACAACGAATGGAACCCCAGCTTAGGCATAAGAAAAGGCTGGGCCGGACGCTCCTAAATCCACACGAAATG
TCCCTTAGCGCGACACGCCGCAAATCCACACGAAATGTCCCTTAAGCCC
TCTGTGAAATCAACACCGGATAGTCCTAGGTCTGTGATAAGGGGACTGCTGCTGGTGCGGTAAGGCCAATTCCTATGGCTAATAGGAATCGGCCGTCGTG
TGACATGTGCGGCCACGGATTGGTTAAGAACGGCAAAACCGCGGCAGGAACCCAACGCTGGTTGTGTCCTCAGTGCAACGTTTCATCGATTAATACCCGC
GCACACACCAGCGATATTCGGCACTTCAAAATCTTTATCGACTGGATTCTTTCCGGCGAATCCGCAGACCATTTAGCCAAACGCCTTGGGGTAACAAGGC
GGACTTTAACCCGGTGGTTCAAGCTGCTGTGGTTTATCACCGTGCCCACGACTACTGACCCCTATCGGGTTTATGACCAGGTCTTTATCGACGGCACCTA
CTTCCACAAAAAATGCCTGCTGGTAGCCTGCACCGAAACACACGTCATCGCCTGGCACTGGTGCCTGCGTGAAAGCTCCTACGAGTACCTGAAACTGCTC
GACAAAATCGCGCAACCACTCATCGTCACCACCGACGGGGCAGGCGGAGCACTCAAGGCACTGCGCATTAAATGGCCCGACGTTGCCATCCAGCGTTGCT
TAGTCCACGTCCAGCGCAACACTTTTGCTGATATCAGCCGCAACCCGATTCACCCAGCGCATAAAGCAATCCGGAAACTGGGCTACATGCTCGTCCAGGT
ACACAACCGTGAAGATGCTGCGCGGTTTACTGCTGCAGTCCACCACACCCGCATTACCTTTGCTGATTGGCTTAAAGAGCGAACCTACCGCAGTGCTATA
CCAGCAGGCCAAGTACCGAAATGGGTCAGCCCCAACCAGAAATGGTGGTACACCCACCGCAACGCCCGCAGGGCTCTAAAACGGCTAGAAAAGCTTATTC
ACGCTGGACAATTATTTACTTTCCTTGACCCGCCTGAAGGTGTCACACAGGACTTAAAAGCCACCACAAACCTGCTGGAAGGCGGCATCAACAAACAACT
CAAAGACTTAGCAGGAAACCATCGGGGCATGTTCGATGAGCATCAGCGCATCACCATGGACTGGTGGCTCTACACCCACACCGAAGACCCGGTAGCGCCA
CTGGAGTTAACCAAGCAACAAGACTTCGGACGCCAAGGAGAAAAAGCAGCACGCGCAGCCTGGGCAAAAGAAGAACTCACACGACGTGGCCACCCAGACG
GACGACCAGCCACATACGACACCCACATCGACAACGAATGGAACCCCAGCTTAGGCATAAGAAAAGGCTGGGCCGGACGCTCCTAAATCCACACGAAATG
TCCCTTAGCGCGACACGCCGCAAATCCACACGAAATGTCCCTTAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1212 bp | 403 aa | 175 | 1386 | + | No |
Chemistry : DDE
ORF sequence :
MANRNRPSCDMCGHGLVKNGKTAAGTQRWLCPQCNVSSINTRAHTSDIRHFKIFIDWILSGESADHLAKRLGVTRRTLTRWFKLLWFITVPTTTDPYRVY
DQVFIDGTYFHKKCLLVACTETHVIAWHWCLRESSYEYLKLLDKIAQPLIVTTDGAGGALKALRIKWPDVAIQRCLVHVQRNTFADISRNPIHPAHKAIR
KLGYMLVQVHNREDAARFTAAVHHTRITFADWLKERTYRSAIPAGQVPKWVSPNQKWWYTHRNARRALKRLEKLIHAGQLFTFLDPPEGVTQDLKATTNL
LEGGINKQLKDLAGNHRGMFDEHQRITMDWWLYTHTEDPVAPLELTKQQDFGRQGEKAARAAWAKEELTRRGHPDGRPATYDTHIDNEWNPSLGIRKGWA
GRS
DQVFIDGTYFHKKCLLVACTETHVIAWHWCLRESSYEYLKLLDKIAQPLIVTTDGAGGALKALRIKWPDVAIQRCLVHVQRNTFADISRNPIHPAHKAIR
KLGYMLVQVHNREDAARFTAAVHHTRITFADWLKERTYRSAIPAGQVPKWVSPNQKWWYTHRNARRALKRLEKLIHAGQLFTFLDPPEGVTQDLKATTNL
LEGGINKQLKDLAGNHRGMFDEHQRITMDWWLYTHTEDPVAPLELTKQQDFGRQGEKAARAAWAKEELTRRGHPDGRPATYDTHIDNEWNPSLGIRKGWA
GRS
Blast result :
Comments
ISCau1 is 59% aa similar to ISCre1.
References
1] ISfinder annotation (2013)
2] Trost,E., Gotker,S., Schneider,J., Schneiker-Bekel,S., Szczepanowski,R., Tilker,A., Viehoever,P., Arnold,W., Bekel,T., Blom,J., Gartemann,K.H., Linke,B., Goesmann,A., Puhler,A., Shukla,S.K. and Tauch,A. (2010) BMC Genomics 11, 91.
2] Trost,E., Gotker,S., Schneider,J., Schneiker-Bekel,S., Szczepanowski,R., Tilker,A., Viehoever,P., Arnold,W., Bekel,T., Blom,J., Gartemann,K.H., Linke,B., Goesmann,A., Puhler,A., Shukla,S.K. and Tauch,A. (2010) BMC Genomics 11, 91.