ISCod2

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016789 ND Corynebacterium diphtheriae
Corynebacterium diphtheriae PW8
DNA section
IS Length : 1407 bp

Ends


IR Length : 26/29

IRL : GGGCTAAGTAGCAAAAAGTGTGTCTGATCTTCTTGAAGTCTGCTGGTCAC
IRR : GGGTTAAGTAGCAAAAAGTGTGTCCGGTCGGCGTGTCGTCGGCCGGACTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGCATGGGTTAAAATGTGT0

DNA sequence

GGGCTAAGTAGCAAAAAGTGTGTCTGATCTTCTTGAAGTCTGCTGGTCACAATAGCTAAAAGCTGCGTGTATATTCCGGCAGACAATATATCGGGGCGGA
TTTCGACCAATCCCAGGTTTTGAACCATACTTGTGCTAGCACATGCGGTTTGATTCATCTTCATGTCTAAGAACCGACCACGATGCCCAGTATGTACAGG
GCAAATGAAGAAAAACGGCACAACAACAAAACGCACCACTAGATGGCGCTGCATCAGTCCCGACTGCGGTGCTTCCACCACCAAAAAACGAACAGACCTT
ACCCACATCGCCGACTTCAAGGCCTTCATCTCCTATACGAGTGGCAACCACACGTTAAGCCAACGTGCCGAAGCCCGCGGATGCAGCCGATGGACTCTCA
ACCGCACATTCGAACCGTTCTGGCTTATCGATATCCCCAACACCCCAGATAAGAACCGCATCTACGACCAAGTCTTCATCGACGCAACCTACACCAATGG
CGGATGCCTACTCATTGCAGCATCACGCACCCATGTACTGTGCTGGCACTGGTGTAAGACAGAATCCACTAAGGCCTACAAAAGACTGCTCTCAAAGCTA
CAACCACCACTATGTGTAGTACTCGACGGCGGATTAGGCGCCTGGTCAGCAATAAAAGCCCTGTGGCCAAACACCATGATTCAACGCTGCCTCGTTCATG
CCCAACGCGTTGTTCGGCGCTATCTCACTTCACGGCCTAGGACGGATGCAGGCAAAACGTTATACTACCTTGCGCTGCGACTGACCAAGATCAAAGACCT
CAACACCGCACGGGAATGGGTCACCCTGCTGCATGAGTGTGGGCAGGTGTATCGCACATTTCTCAATGAGAAGACGAAACTACCCAAACATCGCGACCCA
ACGGGCACACAATGGGAGTTCACGCACATCCGAGTTCGCCAAGCGTTTAACTCGCTGAAACATCTCGCCAACGACGGCTACCTCTTCGGGTTTCTTCAAC
CACCACCCGAGGCCATTGAGCCTGAATTGTGGGTAGCGACCACCAACAGCTTGGAAGGCGGTATCAACTCCCAGCTGAAGCTGCTCGCACGAATGCATCG
AGGTAGGTCAGGAGAACGGCAACGCACGATGCTGGAATGGTGGCTCTACTCAAAAACGCAACTGCCTGACGATCCCGTTGAAATCGCCAAGCAGTGCAAC
TGGGGTAATGACCAACTCGTCAAAGTCACAGTCATAACCCACAACGAGAACCAAGCCGACTACGAAACCGGACGACCAGCCCTCTACGACAACGGTATCG
GAACCGACTACCAACACAACATAGGAATCAGAAAAGGTTGGGTCGGACGCTAACAAAAAGTCCGGCCGACGACACGCCGACCGGACACACTTTTTGCTAC
TTAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1191 bp396 aa1631353+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKNRPRCPVCTGQMKKNGTTTKRTTRWRCISPDCGASTTKKRTDLTHIADFKAFISYTSGNHTLSQRAEARGCSRWTLNRTFEPFWLIDIPNTPDKNRI
YDQVFIDATYTNGGCLLIAASRTHVLCWHWCKTESTKAYKRLLSKLQPPLCVVLDGGLGAWSAIKALWPNTMIQRCLVHAQRVVRRYLTSRPRTDAGKTL
YYLALRLTKIKDLNTAREWVTLLHECGQVYRTFLNEKTKLPKHRDPTGTQWEFTHIRVRQAFNSLKHLANDGYLFGFLQPPPEAIEPELWVATTNSLEGG
INSQLKLLARMHRGRSGERQRTMLEWWLYSKTQLPDDPVEIAKQCNWGNDQLVKVTVITHNENQADYETGRPALYDNGIGTDYQHNIGIRKGWVGR

 

Blast result :
Comments
ISCod2 is 78% aa similar to ISAmas1.
References
1] ISfinder annotation (2013)
2] Trost,E., Blom,J., de Castro Soares,S., Huang,I.H., Al-Dilaimi,A., Schroder,J., Jaenicke,S., Dorella,F.A., Rocha,F.S., Miyoshi,A., Azevedo,V., Schneider,M.P., Silva,A., Camello,T.C., Sabbadini,P.S., Santos,C.S., Santos,L.S., Hirata,R. Jr., Mattos-Guaraldi,A.L., Efstratiou,A., Schmitt,M.P., Ton-That,H. and Tauch,A. (2012) J. Bacteriol. 194 (12), 3199-3215.