ISCod2
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016789 | ND | Corynebacterium diphtheriae | Corynebacterium diphtheriae PW8 |
DNA section
IS Length : 1407 bp
Ends
IR Length : 26/29
IRL : GGGCTAAGTAGCAAAAAGTGTGTCTGATCTTCTTGAAGTCTGCTGGTCAC
IRR : GGGTTAAGTAGCAAAAAGTGTGTCCGGTCGGCGTGTCGTCGGCCGGACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGCATGGGT | TAAAATGTGT | 0 |
DNA sequence
GGGCTAAGTAGCAAAAAGTGTGTCTGATCTTCTTGAAGTCTGCTGGTCACAATAGCTAAAAGCTGCGTGTATATTCCGGCAGACAATATATCGGGGCGGA
TTTCGACCAATCCCAGGTTTTGAACCATACTTGTGCTAGCACATGCGGTTTGATTCATCTTCATGTCTAAGAACCGACCACGATGCCCAGTATGTACAGG
GCAAATGAAGAAAAACGGCACAACAACAAAACGCACCACTAGATGGCGCTGCATCAGTCCCGACTGCGGTGCTTCCACCACCAAAAAACGAACAGACCTT
ACCCACATCGCCGACTTCAAGGCCTTCATCTCCTATACGAGTGGCAACCACACGTTAAGCCAACGTGCCGAAGCCCGCGGATGCAGCCGATGGACTCTCA
ACCGCACATTCGAACCGTTCTGGCTTATCGATATCCCCAACACCCCAGATAAGAACCGCATCTACGACCAAGTCTTCATCGACGCAACCTACACCAATGG
CGGATGCCTACTCATTGCAGCATCACGCACCCATGTACTGTGCTGGCACTGGTGTAAGACAGAATCCACTAAGGCCTACAAAAGACTGCTCTCAAAGCTA
CAACCACCACTATGTGTAGTACTCGACGGCGGATTAGGCGCCTGGTCAGCAATAAAAGCCCTGTGGCCAAACACCATGATTCAACGCTGCCTCGTTCATG
CCCAACGCGTTGTTCGGCGCTATCTCACTTCACGGCCTAGGACGGATGCAGGCAAAACGTTATACTACCTTGCGCTGCGACTGACCAAGATCAAAGACCT
CAACACCGCACGGGAATGGGTCACCCTGCTGCATGAGTGTGGGCAGGTGTATCGCACATTTCTCAATGAGAAGACGAAACTACCCAAACATCGCGACCCA
ACGGGCACACAATGGGAGTTCACGCACATCCGAGTTCGCCAAGCGTTTAACTCGCTGAAACATCTCGCCAACGACGGCTACCTCTTCGGGTTTCTTCAAC
CACCACCCGAGGCCATTGAGCCTGAATTGTGGGTAGCGACCACCAACAGCTTGGAAGGCGGTATCAACTCCCAGCTGAAGCTGCTCGCACGAATGCATCG
AGGTAGGTCAGGAGAACGGCAACGCACGATGCTGGAATGGTGGCTCTACTCAAAAACGCAACTGCCTGACGATCCCGTTGAAATCGCCAAGCAGTGCAAC
TGGGGTAATGACCAACTCGTCAAAGTCACAGTCATAACCCACAACGAGAACCAAGCCGACTACGAAACCGGACGACCAGCCCTCTACGACAACGGTATCG
GAACCGACTACCAACACAACATAGGAATCAGAAAAGGTTGGGTCGGACGCTAACAAAAAGTCCGGCCGACGACACGCCGACCGGACACACTTTTTGCTAC
TTAACCC
TTTCGACCAATCCCAGGTTTTGAACCATACTTGTGCTAGCACATGCGGTTTGATTCATCTTCATGTCTAAGAACCGACCACGATGCCCAGTATGTACAGG
GCAAATGAAGAAAAACGGCACAACAACAAAACGCACCACTAGATGGCGCTGCATCAGTCCCGACTGCGGTGCTTCCACCACCAAAAAACGAACAGACCTT
ACCCACATCGCCGACTTCAAGGCCTTCATCTCCTATACGAGTGGCAACCACACGTTAAGCCAACGTGCCGAAGCCCGCGGATGCAGCCGATGGACTCTCA
ACCGCACATTCGAACCGTTCTGGCTTATCGATATCCCCAACACCCCAGATAAGAACCGCATCTACGACCAAGTCTTCATCGACGCAACCTACACCAATGG
CGGATGCCTACTCATTGCAGCATCACGCACCCATGTACTGTGCTGGCACTGGTGTAAGACAGAATCCACTAAGGCCTACAAAAGACTGCTCTCAAAGCTA
CAACCACCACTATGTGTAGTACTCGACGGCGGATTAGGCGCCTGGTCAGCAATAAAAGCCCTGTGGCCAAACACCATGATTCAACGCTGCCTCGTTCATG
CCCAACGCGTTGTTCGGCGCTATCTCACTTCACGGCCTAGGACGGATGCAGGCAAAACGTTATACTACCTTGCGCTGCGACTGACCAAGATCAAAGACCT
CAACACCGCACGGGAATGGGTCACCCTGCTGCATGAGTGTGGGCAGGTGTATCGCACATTTCTCAATGAGAAGACGAAACTACCCAAACATCGCGACCCA
ACGGGCACACAATGGGAGTTCACGCACATCCGAGTTCGCCAAGCGTTTAACTCGCTGAAACATCTCGCCAACGACGGCTACCTCTTCGGGTTTCTTCAAC
CACCACCCGAGGCCATTGAGCCTGAATTGTGGGTAGCGACCACCAACAGCTTGGAAGGCGGTATCAACTCCCAGCTGAAGCTGCTCGCACGAATGCATCG
AGGTAGGTCAGGAGAACGGCAACGCACGATGCTGGAATGGTGGCTCTACTCAAAAACGCAACTGCCTGACGATCCCGTTGAAATCGCCAAGCAGTGCAAC
TGGGGTAATGACCAACTCGTCAAAGTCACAGTCATAACCCACAACGAGAACCAAGCCGACTACGAAACCGGACGACCAGCCCTCTACGACAACGGTATCG
GAACCGACTACCAACACAACATAGGAATCAGAAAAGGTTGGGTCGGACGCTAACAAAAAGTCCGGCCGACGACACGCCGACCGGACACACTTTTTGCTAC
TTAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1191 bp | 396 aa | 163 | 1353 | + | No |
Chemistry : DDE
ORF sequence :
MSKNRPRCPVCTGQMKKNGTTTKRTTRWRCISPDCGASTTKKRTDLTHIADFKAFISYTSGNHTLSQRAEARGCSRWTLNRTFEPFWLIDIPNTPDKNRI
YDQVFIDATYTNGGCLLIAASRTHVLCWHWCKTESTKAYKRLLSKLQPPLCVVLDGGLGAWSAIKALWPNTMIQRCLVHAQRVVRRYLTSRPRTDAGKTL
YYLALRLTKIKDLNTAREWVTLLHECGQVYRTFLNEKTKLPKHRDPTGTQWEFTHIRVRQAFNSLKHLANDGYLFGFLQPPPEAIEPELWVATTNSLEGG
INSQLKLLARMHRGRSGERQRTMLEWWLYSKTQLPDDPVEIAKQCNWGNDQLVKVTVITHNENQADYETGRPALYDNGIGTDYQHNIGIRKGWVGR
YDQVFIDATYTNGGCLLIAASRTHVLCWHWCKTESTKAYKRLLSKLQPPLCVVLDGGLGAWSAIKALWPNTMIQRCLVHAQRVVRRYLTSRPRTDAGKTL
YYLALRLTKIKDLNTAREWVTLLHECGQVYRTFLNEKTKLPKHRDPTGTQWEFTHIRVRQAFNSLKHLANDGYLFGFLQPPPEAIEPELWVATTNSLEGG
INSQLKLLARMHRGRSGERQRTMLEWWLYSKTQLPDDPVEIAKQCNWGNDQLVKVTVITHNENQADYETGRPALYDNGIGTDYQHNIGIRKGWVGR
Blast result :
Comments
ISCod2 is 78% aa similar to ISAmas1.
References
1] ISfinder annotation (2013)
2] Trost,E., Blom,J., de Castro Soares,S., Huang,I.H., Al-Dilaimi,A., Schroder,J., Jaenicke,S., Dorella,F.A., Rocha,F.S., Miyoshi,A., Azevedo,V., Schneider,M.P., Silva,A., Camello,T.C., Sabbadini,P.S., Santos,C.S., Santos,L.S., Hirata,R. Jr., Mattos-Guaraldi,A.L., Efstratiou,A., Schmitt,M.P., Ton-That,H. and Tauch,A. (2012) J. Bacteriol. 194 (12), 3199-3215.
2] Trost,E., Blom,J., de Castro Soares,S., Huang,I.H., Al-Dilaimi,A., Schroder,J., Jaenicke,S., Dorella,F.A., Rocha,F.S., Miyoshi,A., Azevedo,V., Schneider,M.P., Silva,A., Camello,T.C., Sabbadini,P.S., Santos,C.S., Santos,L.S., Hirata,R. Jr., Mattos-Guaraldi,A.L., Efstratiou,A., Schmitt,M.P., Ton-That,H. and Tauch,A. (2012) J. Bacteriol. 194 (12), 3199-3215.