ISSaci1

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AHBF01000036 ND Streptomyces acidiscabies
Streptomyces acidiscabies 84-104
DNA section
IS Length : 1747 bp

Ends


IR Length : 20/21

IRL : GGACCTGCCGATCAATAACTCTTCGGTTTTTGTGGGCTGTTGGGTTGTAG
IRR : GGACCTGCCGATCAATAATTCCTAGATCTTGGTGAGGATTATGGGGGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
GATGAACCAGATGGGCCCCG0

DNA sequence

GGACCTGCCGATCAATAACTCTTCGGTTTTTGTGGGCTGTTGGGTTGTAGGGTGCGGGGGTGTCGGAGGGGACGAAGGCAGAGCTGGTGGACGTGTTGGG
GCTGTTGCTGCCGCATCTCGATGAGCGCCAGCAGCGCCTGACGCTGGGTGCCGTGGCCCGCGTTCTGGGCCACGGCGGGATCCGCGTGGTGGCCGGAGCG
GCCGGGGTGGCGGAGTCCACGGTGTCGCGTGGGAAGCGGGAGCTGGAGCACGCGGAGGAGCCCGCCGGCCGGGTCCGGGCACCGGGCGCGGGTCGGAAGC
CCTTGCGGGAGGCCGATCCGGGGCTGGTGCCCGCGTTGCTGGCGCTGGTCGAGCCGGACCAGCGGGGTGACCCGGAGTCTCCGCTGCTGTGGACGGTGAA
GTCCACCCGGAATCTGGCGGGCGAGCTGACGCGTCAGGGGCACCGGGTCGGTTCGGACACGGTGGCTACGCTGTTGAAGGCGGAGGGCTTCTCTCTGCAG
GGCACCTCCAGGACCACCGAGGGGGCCCGGCATCCGGACCGGGACGCCCAGTTCCGCTACATCAACGACCAGGTCACGGCGTACCTCGCCGAGGGGCAGC
CGGTCATCAGCGTGGATGCCAAGAAGAAGGAGACGCTGGGCAGCTACGCGGTGATCGGACGCGAGTGGCACCGCGCCGGACAGCCGGTGCAGGTCCGCGC
ACACGACTTCCCCGAGAAGGGCGCCCAGAAAGCGGTGCCGTACGGGATCTACGACATAGGCGCGGATACCGGCTGGGTGTCGGTGGGCTGCGACGGGGAC
ACCTCTGCCTTCGCGGTGGCCACTTTGCGCCGCTGGTGGAACGGTGAGGGGCGCCGCCGCTACCCGCACGCGTCCCGCCTGCTGGTCACCGCCGACGCCG
GAGGCTCCAACGGCTACCGTGTGCGCGCCTGGAAGAAGGAACTCGCGGACTTCGCCTACGAGACAGGCCTTGAAGTGACTGTCTGTCACTTTCCACCGGG
AACATCGAAGTGGAACAAAATAGAGCACAGGCTGTTCTCACAGATCAGCGTCAACTGGCGTGGCAGGCCCCTGACCAGCCACGAAGTCGTCGTCAGCACC
ATCGGAGCGACCACGACACGCAGCGGACCGTCCGTCCACGCCGAGCTCGACCCCGGCGTCTACCCCACCGGCGTCACCGTCCCCGACACCGTCATGGAAC
GCCTGCCCCTGACGCCGCACGAGTGGCACGGCACGTGGAACTACACCCTGCGCCCCGAACCGCTCGCTCCTGAATTGTCCCCACCCAGCGCCGGGTTCGG
GCGCTTTCCCACCGGCGACAAGCTCCCCATGTGGCTGCGGCACCCCAGCCTCACCGGACTCGAACCCGCCGCCTTCGGCGATCTCGCCGCCCGTTACCAA
GCCTGGTGTGCCGAGCACCCGCCGATCTTCCTGCCCGGCAAACGCCCCGACGGCGGCCCCGGCGCCGGCAGCGGACGACTCTCCGTCGCCGACCAGCTTG
TCGTCTTCCTCCTCACGAAGCGCTGGTCCATGGCCCGGACGCCACTCGCCGAGGCAACCGGCCTGGCCAAGAGCCGGATCGGCGCGACCCTCCGGGAGGC
CACCCCCGTGCTCACCGCGCTGGGGTACACGGTCCCGGTCGGCGCCCTCACCGTGACCACGGCACAACAGCTCGCCGAGATCGCCGGGCACGACCTCACA
CCCCCATAATCCTCACCAAGATCTAGGAATTATTGATCGGCAGGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1623 bp540 aa871709+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDVLGLLLPHLDERQQRLTLGAVARVLGHGGIRVVAGAAGVAESTVSRGKRELEHAEEPAGRVRAPGAGRKPLREADPGLVPALLALVEPDQRGDPESPL
LWTVKSTRNLAGELTRQGHRVGSDTVATLLKAEGFSLQGTSRTTEGARHPDRDAQFRYINDQVTAYLAEGQPVISVDAKKKETLGSYAVIGREWHRAGQP
VQVRAHDFPEKGAQKAVPYGIYDIGADTGWVSVGCDGDTSAFAVATLRRWWNGEGRRRYPHASRLLVTADAGGSNGYRVRAWKKELADFAYETGLEVTVC
HFPPGTSKWNKIEHRLFSQISVNWRGRPLTSHEVVVSTIGATTTRSGPSVHAELDPGVYPTGVTVPDTVMERLPLTPHEWHGTWNYTLRPEPLAPELSPP
SAGFGRFPTGDKLPMWLRHPSLTGLEPAAFGDLAARYQAWCAEHPPIFLPGKRPDGGPGAGSGRLSVADQLVVFLLTKRWSMARTPLAEATGLAKSRIGA
TLREATPVLTALGYTVPVGALTVTTAQQLAEIAGHDLTPP

 

Blast result :
Comments
ISSaci1 is 74% aa similar to ISFsp12.
References
1] ISfinder annotation (2013)
2] Huguet-Tapia,J.C. and Loria,R. (2012) J. Bacteriol. 194 (7), 1847.