ISCde3

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010424 ND Candidatus Desulforudis
Candidatus Desulforudis audaxviator MP104C
DNA section
IS Length : 1572 bp

Ends


IR Length : 18/28

IRL : GTGAGTGTAAGGTTTAAGTAGGAGATGTGAGGTCGGAAATAGAAGTGAGA
IRR : GTCCGTGTCAAGACTTAGTAGGCGATCTCCCAGCCGATTTAATTTGAATT

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGCTGTGCAATTAACCAGTTCCGCTTG9
AAGGATTGAAGCGCGGGCGGGTTCGCTTG9
GATATTTTGGCCGAATCCGCAGTGCTTTG9
GCAACGCTTATTCTTCGGTACCGGCGTTG9
GCGGCCGGGGCCATGCCCTTTCGGCATTC9
CGCCCAGCCGGACCTGGTACCCCATCTTG9
TTTCGGGGTTTTGCATTGACAGCACGTGG9
TGAACAGCAGTGAGCCCGGTAGCACCTTG9
AGGAAGGTGGCTTTTCAATT0
GGAGGAGGTTCTGGAGGTTC0

DNA sequence

GTGAGTGTAAGGTTTAAGTAGGAGATGTGAGGTCGGAAATAGAAGTGAGACCTCAAAACGGCTTCCCCTGAGGGGAAGCCCTCCCCGCCAAAGGAGTGAG
GTCTCATGTTCAAGATTCGCTTTCTGCTTGAGGTAGTCCTGTTTCTGGCCAAGGGAATTTTTGAGGTGTTCAGGTCGGTGCGCAATATGGATGAGTTGGA
AGAGCGGGTGCAGCGGTTGGTTCAACAGGCAGGCGGCAAAATGCTGGAGGAGGCGCTGGCACACATTGACCTTGAGTTAAGCGGCAAGCGGGATCCAGCC
CTCAAGAACGTGGGACAGCGGTCGCGGACCCTGGTCACCAGCTTCGGTGAGATTACGGTTAAGCGCCGACTGTACCGTAACCAGAAGACCGGCGCGTACC
GGTTCCTTCTGGACGAAGCCTTGGGAATCCCTGAACGCCAACGGGTGACACCGCGGATGACCCGTATGATCCTGGAGCTAGGCACGGAGATGCCCTTCAG
GCGCGCGGCCCGGGTTATGGGTTTTCTAGTACCGGGGATTCACTGGATGACCGTCTGGTCTAAGGTTCAGGATGCTGGAGAAAAGGCCGCCCGGGATGCT
GAGGCACTACGCGAGGCCGTCTTTGAAGACGGTGTGGTCCCTGAAGGCGGCAAGGAGGTTCGGGAGTTATCCATTGAAGCCGATGGTGTAGTAATACCCT
TGCAGCGGTCGCCCAAGGCGTTTGGTGAGATCAAGCTGTTTATCGGCTACGAGGGCAGGGAACAAAAGACCCGGAAACTGGTGAACCGTTACACGGTGGC
CACCGCCAGGGGCAGCCGGGTGGCTTGGGAAGACACCGGGGCGGCCTTCGGCCACAAGTGGGACCTTAGCAGGGTAGAGCGGATCCGCATTGGTGGGGAC
GGCGCCGAGTGGATCAAACAAGGCCTGGAGATGTTCCCCGGGGCGACTTACCACCTTGACCCCTTCCACCTGCGCCGGCGTTTAACCGAGGCTTTAAGTT
ACAGCAGCAACGTCTATGAAACTGTCACCGAAGGGTTAGCCGAGCTAAACCAAGATGCGGTAGTTTCCGCCTTGGACCAGGCGATTCGGGTCAACCGGGG
TGCACGCCGTAACGGGATCATGCGGCTTAAGGAGTATCTCCTGGCTAACTGGCAAGGTATCGCCGCCTTGCCGGAGGGAGACCGTTTAGGTGCGATCGAG
GGCCAGGTCCGTCACACCATCGCCAGGCGAACAAAGCGGATTGGGGCGCGTTGGAGCCCGGCCGGTGCGGAACGGATGGGACGCCTGTTAGCGGTACGGG
CTAATGATGAGCTGGACAGATACGTGGTACACTCGGAACCCCGGTTCGACCTACTGAAAAAGGCTGTCGGAGCCGAGGCAATCCAACTGCCCAAACGCTT
CGGCAAAGATCCCGAGGCCTGGCTTCAAGCCAACGTGCCCGCCCTTGAAGGACCGCACGCCGGAAAACACTGGGTCAAGCACATAGTAAGAGAGATTAGT
TCACCGAGGTGGTCTACGGTCTAATTCAAATTAAATCGGCTGGGAGATCGCCTACTAAGTCTTGACACGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa1061524+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFKIRFLLEVVLFLAKGIFEVFRSVRNMDELEERVQRLVQQAGGKMLEEALAHIDLELSGKRDPALKNVGQRSRTLVTSFGEITVKRRLYRNQKTGAYRF
LLDEALGIPERQRVTPRMTRMILELGTEMPFRRAARVMGFLVPGIHWMTVWSKVQDAGEKAARDAEALREAVFEDGVVPEGGKEVRELSIEADGVVIPLQ
RSPKAFGEIKLFIGYEGREQKTRKLVNRYTVATARGSRVAWEDTGAAFGHKWDLSRVERIRIGGDGAEWIKQGLEMFPGATYHLDPFHLRRRLTEALSYS
SNVYETVTEGLAELNQDAVVSALDQAIRVNRGARRNGIMRLKEYLLANWQGIAALPEGDRLGAIEGQVRHTIARRTKRIGARWSPAGAERMGRLLAVRAN
DELDRYVVHSEPRFDLLKKAVGAEAIQLPKRFGKDPEAWLQANVPALEGPHAGKHWVKHIVREISSPRWSTV

 

Blast result :
Comments
ISCde3 is 50% aa similar to ISHor2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References