ISCde3
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010424 | ND | Candidatus Desulforudis | Candidatus Desulforudis audaxviator MP104C |
DNA section
IS Length : 1572 bp
Ends
IR Length : 18/28
IRL : GTGAGTGTAAGGTTTAAGTAGGAGATGTGAGGTCGGAAATAGAAGTGAGA
IRR : GTCCGTGTCAAGACTTAGTAGGCGATCTCCCAGCCGATTTAATTTGAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGCTGTGC | AATTAACCA | GTTCCGCTTG | 9 |
AAGGATTGAA | GCGCGGGCG | GGTTCGCTTG | 9 |
GATATTTTGG | CCGAATCCG | CAGTGCTTTG | 9 |
GCAACGCTTA | TTCTTCGGT | ACCGGCGTTG | 9 |
GCGGCCGGGG | CCATGCCCT | TTCGGCATTC | 9 |
CGCCCAGCCG | GACCTGGTA | CCCCATCTTG | 9 |
TTTCGGGGTT | TTGCATTGA | CAGCACGTGG | 9 |
TGAACAGCAG | TGAGCCCGG | TAGCACCTTG | 9 |
AGGAAGGTGG | CTTTTCAATT | 0 | |
GGAGGAGGTT | CTGGAGGTTC | 0 |
DNA sequence
GTGAGTGTAAGGTTTAAGTAGGAGATGTGAGGTCGGAAATAGAAGTGAGACCTCAAAACGGCTTCCCCTGAGGGGAAGCCCTCCCCGCCAAAGGAGTGAG
GTCTCATGTTCAAGATTCGCTTTCTGCTTGAGGTAGTCCTGTTTCTGGCCAAGGGAATTTTTGAGGTGTTCAGGTCGGTGCGCAATATGGATGAGTTGGA
AGAGCGGGTGCAGCGGTTGGTTCAACAGGCAGGCGGCAAAATGCTGGAGGAGGCGCTGGCACACATTGACCTTGAGTTAAGCGGCAAGCGGGATCCAGCC
CTCAAGAACGTGGGACAGCGGTCGCGGACCCTGGTCACCAGCTTCGGTGAGATTACGGTTAAGCGCCGACTGTACCGTAACCAGAAGACCGGCGCGTACC
GGTTCCTTCTGGACGAAGCCTTGGGAATCCCTGAACGCCAACGGGTGACACCGCGGATGACCCGTATGATCCTGGAGCTAGGCACGGAGATGCCCTTCAG
GCGCGCGGCCCGGGTTATGGGTTTTCTAGTACCGGGGATTCACTGGATGACCGTCTGGTCTAAGGTTCAGGATGCTGGAGAAAAGGCCGCCCGGGATGCT
GAGGCACTACGCGAGGCCGTCTTTGAAGACGGTGTGGTCCCTGAAGGCGGCAAGGAGGTTCGGGAGTTATCCATTGAAGCCGATGGTGTAGTAATACCCT
TGCAGCGGTCGCCCAAGGCGTTTGGTGAGATCAAGCTGTTTATCGGCTACGAGGGCAGGGAACAAAAGACCCGGAAACTGGTGAACCGTTACACGGTGGC
CACCGCCAGGGGCAGCCGGGTGGCTTGGGAAGACACCGGGGCGGCCTTCGGCCACAAGTGGGACCTTAGCAGGGTAGAGCGGATCCGCATTGGTGGGGAC
GGCGCCGAGTGGATCAAACAAGGCCTGGAGATGTTCCCCGGGGCGACTTACCACCTTGACCCCTTCCACCTGCGCCGGCGTTTAACCGAGGCTTTAAGTT
ACAGCAGCAACGTCTATGAAACTGTCACCGAAGGGTTAGCCGAGCTAAACCAAGATGCGGTAGTTTCCGCCTTGGACCAGGCGATTCGGGTCAACCGGGG
TGCACGCCGTAACGGGATCATGCGGCTTAAGGAGTATCTCCTGGCTAACTGGCAAGGTATCGCCGCCTTGCCGGAGGGAGACCGTTTAGGTGCGATCGAG
GGCCAGGTCCGTCACACCATCGCCAGGCGAACAAAGCGGATTGGGGCGCGTTGGAGCCCGGCCGGTGCGGAACGGATGGGACGCCTGTTAGCGGTACGGG
CTAATGATGAGCTGGACAGATACGTGGTACACTCGGAACCCCGGTTCGACCTACTGAAAAAGGCTGTCGGAGCCGAGGCAATCCAACTGCCCAAACGCTT
CGGCAAAGATCCCGAGGCCTGGCTTCAAGCCAACGTGCCCGCCCTTGAAGGACCGCACGCCGGAAAACACTGGGTCAAGCACATAGTAAGAGAGATTAGT
TCACCGAGGTGGTCTACGGTCTAATTCAAATTAAATCGGCTGGGAGATCGCCTACTAAGTCTTGACACGGAC
GTCTCATGTTCAAGATTCGCTTTCTGCTTGAGGTAGTCCTGTTTCTGGCCAAGGGAATTTTTGAGGTGTTCAGGTCGGTGCGCAATATGGATGAGTTGGA
AGAGCGGGTGCAGCGGTTGGTTCAACAGGCAGGCGGCAAAATGCTGGAGGAGGCGCTGGCACACATTGACCTTGAGTTAAGCGGCAAGCGGGATCCAGCC
CTCAAGAACGTGGGACAGCGGTCGCGGACCCTGGTCACCAGCTTCGGTGAGATTACGGTTAAGCGCCGACTGTACCGTAACCAGAAGACCGGCGCGTACC
GGTTCCTTCTGGACGAAGCCTTGGGAATCCCTGAACGCCAACGGGTGACACCGCGGATGACCCGTATGATCCTGGAGCTAGGCACGGAGATGCCCTTCAG
GCGCGCGGCCCGGGTTATGGGTTTTCTAGTACCGGGGATTCACTGGATGACCGTCTGGTCTAAGGTTCAGGATGCTGGAGAAAAGGCCGCCCGGGATGCT
GAGGCACTACGCGAGGCCGTCTTTGAAGACGGTGTGGTCCCTGAAGGCGGCAAGGAGGTTCGGGAGTTATCCATTGAAGCCGATGGTGTAGTAATACCCT
TGCAGCGGTCGCCCAAGGCGTTTGGTGAGATCAAGCTGTTTATCGGCTACGAGGGCAGGGAACAAAAGACCCGGAAACTGGTGAACCGTTACACGGTGGC
CACCGCCAGGGGCAGCCGGGTGGCTTGGGAAGACACCGGGGCGGCCTTCGGCCACAAGTGGGACCTTAGCAGGGTAGAGCGGATCCGCATTGGTGGGGAC
GGCGCCGAGTGGATCAAACAAGGCCTGGAGATGTTCCCCGGGGCGACTTACCACCTTGACCCCTTCCACCTGCGCCGGCGTTTAACCGAGGCTTTAAGTT
ACAGCAGCAACGTCTATGAAACTGTCACCGAAGGGTTAGCCGAGCTAAACCAAGATGCGGTAGTTTCCGCCTTGGACCAGGCGATTCGGGTCAACCGGGG
TGCACGCCGTAACGGGATCATGCGGCTTAAGGAGTATCTCCTGGCTAACTGGCAAGGTATCGCCGCCTTGCCGGAGGGAGACCGTTTAGGTGCGATCGAG
GGCCAGGTCCGTCACACCATCGCCAGGCGAACAAAGCGGATTGGGGCGCGTTGGAGCCCGGCCGGTGCGGAACGGATGGGACGCCTGTTAGCGGTACGGG
CTAATGATGAGCTGGACAGATACGTGGTACACTCGGAACCCCGGTTCGACCTACTGAAAAAGGCTGTCGGAGCCGAGGCAATCCAACTGCCCAAACGCTT
CGGCAAAGATCCCGAGGCCTGGCTTCAAGCCAACGTGCCCGCCCTTGAAGGACCGCACGCCGGAAAACACTGGGTCAAGCACATAGTAAGAGAGATTAGT
TCACCGAGGTGGTCTACGGTCTAATTCAAATTAAATCGGCTGGGAGATCGCCTACTAAGTCTTGACACGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 106 | 1524 | + | No |
Chemistry : DDE
ORF sequence :
MFKIRFLLEVVLFLAKGIFEVFRSVRNMDELEERVQRLVQQAGGKMLEEALAHIDLELSGKRDPALKNVGQRSRTLVTSFGEITVKRRLYRNQKTGAYRF
LLDEALGIPERQRVTPRMTRMILELGTEMPFRRAARVMGFLVPGIHWMTVWSKVQDAGEKAARDAEALREAVFEDGVVPEGGKEVRELSIEADGVVIPLQ
RSPKAFGEIKLFIGYEGREQKTRKLVNRYTVATARGSRVAWEDTGAAFGHKWDLSRVERIRIGGDGAEWIKQGLEMFPGATYHLDPFHLRRRLTEALSYS
SNVYETVTEGLAELNQDAVVSALDQAIRVNRGARRNGIMRLKEYLLANWQGIAALPEGDRLGAIEGQVRHTIARRTKRIGARWSPAGAERMGRLLAVRAN
DELDRYVVHSEPRFDLLKKAVGAEAIQLPKRFGKDPEAWLQANVPALEGPHAGKHWVKHIVREISSPRWSTV
LLDEALGIPERQRVTPRMTRMILELGTEMPFRRAARVMGFLVPGIHWMTVWSKVQDAGEKAARDAEALREAVFEDGVVPEGGKEVRELSIEADGVVIPLQ
RSPKAFGEIKLFIGYEGREQKTRKLVNRYTVATARGSRVAWEDTGAAFGHKWDLSRVERIRIGGDGAEWIKQGLEMFPGATYHLDPFHLRRRLTEALSYS
SNVYETVTEGLAELNQDAVVSALDQAIRVNRGARRNGIMRLKEYLLANWQGIAALPEGDRLGAIEGQVRHTIARRTKRIGARWSPAGAERMGRLLAVRAN
DELDRYVVHSEPRFDLLKKAVGAEAIQLPKRFGKDPEAWLQANVPALEGPHAGKHWVKHIVREISSPRWSTV
Blast result :
Comments
ISCde3 is 50% aa similar to ISHor2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References