ISClsp4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015737 | ND | Clostridium sp. | Clostridium sp. SY8519 |
DNA section
IS Length : 1787 bp
Ends
IR Length : 17/25
IRL : CATAGAGTAAAATTTTAGTTGGCAAAAACAAAAAGAAGAGGCCGAAGCCC
IRR : GATACTGTCAAGTAATCGTTGGCAACCCACTCATACATTTCAACCGTACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCGTTTGT | CATAGGCGG | AAACCCACTA | 9 |
GAGTGTCACT | GTGTAACCT | TTTTCCAGGA | 9 |
DNA sequence
CATAGAGTAAAATTTTAGTTGGCAAAAACAAAAAGAAGAGGCCGAAGCCCCTTCCATATCATACAGAAAACCATTAGTATTTATTTTGCTAAGAATACAT
ACGAAAGGATCTGTATGATGAATACTATGATAGAGGAAAAGGGCGTAACTTTCAAGGAATTAGAGCAGGAGATTTTCAGATTTGTTTGCGACCTTGGCGT
CGCACTGACCCAAGAGATACTCCAGCAGTATGATAAATACCTGCATGACAGCAGAGATACATCCGAACTCCGTGACAAAGGGACGCGCCACACATCTATC
AAAACGGTCTATGGAGACGTGCCTTATGACAGGTATGTGTACAGGACCAGGGATGAGTATGGTGAAAATCACTATGTCTATCTGTTGGATGAAAATCTGA
AGATGAACCGTGTCGGCCTGGTTTCAGAGAATTGTGTGGAACTCATGGTTTCATCCATCACAGAGATGTCCTATCGGAATTGTGCCAACAAAGTTTCCGA
CATGACAGGGCTCCCCATCAGCCATACCGGTGTGTGGAATATCATACAGACTCTTGGAGAAAAACTGGAAAATGATGAGAGGGAACTTGTTGCAGCTAAT
AAGAAACAAGAAGTAAAAGGCGAAAAAGAAGTTCCAGTGTTGTTTGAAGAAGCTGATGGTGTATGGCTGAATCTTCAGGGAAAAGATCGAGAAAAACGGC
ATTTCCCAAAAGCGGAAATGAAAGCAGCAATCGCCTATGATGGTTGGAAAGCGGAGGGAAACGACCGCTACTCTCTTGATGGAAAAGTTGTGACTGCCGG
ATTTGAGAAGGCTTCCGAATTCCAGAAAAAAAGAGAGGCGATGATCGCTGCCGAGTATAACCTCGATGAGGTTCAGTTACGCTTCCTGAATGGTGACGGA
GCTTCCTGGATCAAGAAAACGCAGGATAAGGAAACGGTGTTCCAGCTGGATCCGTTTCACAGAAACCAGAGTATCCGGAAAAACCTGCCCCATGCAAAAG
CAATCCATGATGTTATGGAAATGCTGCGTGAGAATAAGGTGGCGGAAACTTTTGCTTATCTTGAAATATATCGTGACAGCCTGGACGATGATGAATCCAT
AAAGAAGGTGGAAGAAGTGATCAGCTACTTCCGTTCCAACAGGGATGGCCTACTGCCATATCAGGAGCGTGGGCTGGAAATCCCGGAAAGCCCGGAAGGA
CTTATTTATAGAAAAATGGGGACGATGGAGAACCATATCTGGAGCGTCATAGCCAGGAGAATGAAGCATAACCATACCAGCTGGAGCATCAAGGGCGGTA
ACCATCTGGCAAAGATCCTGGCGAAGAAATGTTCCGGAAAGCTTTATGAAGTAACGGAGCAGCTGAGAATACCGATATTTGAAAAAGAGAAACTGGAAGA
AATCAAAGGAGATATCCTGCAGGCAGGCCAGATCAGGAAGAAGATCGGAAAGGGATACGAATACCCGGTTATTGGCCATATGACTGCGTTAGAAGGGAAG
ACATCCGGGGAACGGGGAAAACTTTTGGCCATGGCAGGATTTTAAACAGTTCCGGAAGTTATAATGGTGTGCAATGAAAAACGATAGCGAGGCTTTCGTA
GGGAGCTGCATGCTAGCAGCGAAGGCGGGCGCATGTTTGAGCCCAAAGGGCGAGTTCGCGCAGGAGCCTGGGCGAAAAAGCGCATGCAGCGAGCAGAAAA
CACAGCGTGTTTTCATACACACCTTATAAAGACGGAACGTACGGTTGAAATGTATGAGTGGGTTGCCAACGATTACTTGACAGTATC
ACGAAAGGATCTGTATGATGAATACTATGATAGAGGAAAAGGGCGTAACTTTCAAGGAATTAGAGCAGGAGATTTTCAGATTTGTTTGCGACCTTGGCGT
CGCACTGACCCAAGAGATACTCCAGCAGTATGATAAATACCTGCATGACAGCAGAGATACATCCGAACTCCGTGACAAAGGGACGCGCCACACATCTATC
AAAACGGTCTATGGAGACGTGCCTTATGACAGGTATGTGTACAGGACCAGGGATGAGTATGGTGAAAATCACTATGTCTATCTGTTGGATGAAAATCTGA
AGATGAACCGTGTCGGCCTGGTTTCAGAGAATTGTGTGGAACTCATGGTTTCATCCATCACAGAGATGTCCTATCGGAATTGTGCCAACAAAGTTTCCGA
CATGACAGGGCTCCCCATCAGCCATACCGGTGTGTGGAATATCATACAGACTCTTGGAGAAAAACTGGAAAATGATGAGAGGGAACTTGTTGCAGCTAAT
AAGAAACAAGAAGTAAAAGGCGAAAAAGAAGTTCCAGTGTTGTTTGAAGAAGCTGATGGTGTATGGCTGAATCTTCAGGGAAAAGATCGAGAAAAACGGC
ATTTCCCAAAAGCGGAAATGAAAGCAGCAATCGCCTATGATGGTTGGAAAGCGGAGGGAAACGACCGCTACTCTCTTGATGGAAAAGTTGTGACTGCCGG
ATTTGAGAAGGCTTCCGAATTCCAGAAAAAAAGAGAGGCGATGATCGCTGCCGAGTATAACCTCGATGAGGTTCAGTTACGCTTCCTGAATGGTGACGGA
GCTTCCTGGATCAAGAAAACGCAGGATAAGGAAACGGTGTTCCAGCTGGATCCGTTTCACAGAAACCAGAGTATCCGGAAAAACCTGCCCCATGCAAAAG
CAATCCATGATGTTATGGAAATGCTGCGTGAGAATAAGGTGGCGGAAACTTTTGCTTATCTTGAAATATATCGTGACAGCCTGGACGATGATGAATCCAT
AAAGAAGGTGGAAGAAGTGATCAGCTACTTCCGTTCCAACAGGGATGGCCTACTGCCATATCAGGAGCGTGGGCTGGAAATCCCGGAAAGCCCGGAAGGA
CTTATTTATAGAAAAATGGGGACGATGGAGAACCATATCTGGAGCGTCATAGCCAGGAGAATGAAGCATAACCATACCAGCTGGAGCATCAAGGGCGGTA
ACCATCTGGCAAAGATCCTGGCGAAGAAATGTTCCGGAAAGCTTTATGAAGTAACGGAGCAGCTGAGAATACCGATATTTGAAAAAGAGAAACTGGAAGA
AATCAAAGGAGATATCCTGCAGGCAGGCCAGATCAGGAAGAAGATCGGAAAGGGATACGAATACCCGGTTATTGGCCATATGACTGCGTTAGAAGGGAAG
ACATCCGGGGAACGGGGAAAACTTTTGGCCATGGCAGGATTTTAAACAGTTCCGGAAGTTATAATGGTGTGCAATGAAAAACGATAGCGAGGCTTTCGTA
GGGAGCTGCATGCTAGCAGCGAAGGCGGGCGCATGTTTGAGCCCAAAGGGCGAGTTCGCGCAGGAGCCTGGGCGAAAAAGCGCATGCAGCGAGCAGAAAA
CACAGCGTGTTTTCATACACACCTTATAAAGACGGAACGTACGGTTGAAATGTATGAGTGGGTTGCCAACGATTACTTGACAGTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1428 bp | 475 aa | 118 | 1545 | + | No |
Chemistry : DDE
ORF sequence :
MNTMIEEKGVTFKELEQEIFRFVCDLGVALTQEILQQYDKYLHDSRDTSELRDKGTRHTSIKTVYGDVPYDRYVYRTRDEYGENHYVYLLDENLKMNRVG
LVSENCVELMVSSITEMSYRNCANKVSDMTGLPISHTGVWNIIQTLGEKLENDERELVAANKKQEVKGEKEVPVLFEEADGVWLNLQGKDREKRHFPKAE
MKAAIAYDGWKAEGNDRYSLDGKVVTAGFEKASEFQKKREAMIAAEYNLDEVQLRFLNGDGASWIKKTQDKETVFQLDPFHRNQSIRKNLPHAKAIHDVM
EMLRENKVAETFAYLEIYRDSLDDDESIKKVEEVISYFRSNRDGLLPYQERGLEIPESPEGLIYRKMGTMENHIWSVIARRMKHNHTSWSIKGGNHLAKI
LAKKCSGKLYEVTEQLRIPIFEKEKLEEIKGDILQAGQIRKKIGKGYEYPVIGHMTALEGKTSGERGKLLAMAGF
LVSENCVELMVSSITEMSYRNCANKVSDMTGLPISHTGVWNIIQTLGEKLENDERELVAANKKQEVKGEKEVPVLFEEADGVWLNLQGKDREKRHFPKAE
MKAAIAYDGWKAEGNDRYSLDGKVVTAGFEKASEFQKKREAMIAAEYNLDEVQLRFLNGDGASWIKKTQDKETVFQLDPFHRNQSIRKNLPHAKAIHDVM
EMLRENKVAETFAYLEIYRDSLDDDESIKKVEEVISYFRSNRDGLLPYQERGLEIPESPEGLIYRKMGTMENHIWSVIARRMKHNHTSWSIKGGNHLAKI
LAKKCSGKLYEVTEQLRIPIFEKEKLEEIKGDILQAGQIRKKIGKGYEYPVIGHMTALEGKTSGERGKLLAMAGF
Blast result :
Comments
ISClsp4 is 50% aa similar to ISHor2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References