ISCur2
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010545 | ND | Corynebacterium urealyticum | Corynebacterium urealyticum DSM 7109 Corynebacterium urealyticum DSM 7111 |
DNA section
IS Length : 1384 bp
Ends
IR Length : 30/35
IRL : GGGTTAAACGACAAAATGTGTGTCCGGATTCGTCGATTTGTTTGGGTTGA
IRR : GGGTTAAACGACAAAATGTGTGTCTGACTCCGGCGTGTCGCGGGGTTAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTCTGGTG | GTGTTCGT | GGGCGAGGGC | 8 |
GTAGTCCTCA | ACGATTCC | CCGTTAACGC | 8 |
TTTTACCCCG | CGGCCTCG | CCCCACCCCC | 8 |
DNA sequence
GGGTTAAACGACAAAATGTGTGTCCGGATTCGTCGATTTGTTTGGGTTGATCAGGGGTAATCCGGAAAGTATATGCTCCTAGAGCATATATCCGCCCCGG
GGCGGCGAAATACCGGGTGTGACAGCAGCGTGTGGTAGGAGCTGGTGTTGGCATTGATCAATGCCGAAGAACAGACCACGCTGCCACTGCGGCGGCGAGA
TGAAACGCAACGGTAAGACCTCCGCCAACCGCACCCGGTGGCGGTGCAAAATCTGCGGCGCTTCCACCACCAAGCAGCGCCCCGATATCACCAACTCAGC
AGCCTTCGCAGCATTTATCACCCACCTCACAACCGGTGCGAGCTTGGAAACCGCTGCCGCCGAAGCAGGGTGTCATCCGCGTACCCTGCAACGCCGGTTT
GAACACTTCTGGCTAGTTGATGTCCCCGATCCCACGATCGGGCACGAAGGCCGGGTCTACGACCAGGTCTTTCTTGACGGCACCTACACCGCCGGCGGAT
GCTTGATTGTTGCCGCCACCTTGGATCACGTCATCGCTTGGCACTGGTGCACACGTGAGACCACCCGCGACTACCAAAGGCTCCTCGAACGTATCCCCGC
GCCCCTGATCGCTGTCATCGACGGCGGCCAAGGCGCTGCCAGCGCAATCAAGACATGCTGGCCTGCAACGAAAGTGCAGCGCTGCCTCGTTCACGCCCAA
CGCGTGGTGCGTCGGCACACCACCTCACGCCCCCGCACCGATGCAGGACGAGCGATTTACCAGCTTGCGCTCAACCTTACGAAGATCACCGCTCTTGACG
AGGCGGCCGCGTGGGGTGCGCAACTGCACGAATACGGCACTATCTACCGCGACTGGATGAACCAGAAAACGTTCACAACCGACCCGGCGACACGGCAACG
CACCTGGTCATGGACGCATGAACGCACCCGCAAGGCCTACAACAGTCTCAACCACCTGTGGCGCAACCAGCTGTTATTTGTCTATCTCGACCCACCTGAC
GGTGTCCTCGATGTCAGCCGGATCAAATCCACCACCAACAGCCTGGAAGGCGGCATCAACGCCCAGTTGAAACTGCTTGCCCGCACCCACCGCGGCAGAT
CCGGTGAACACCAACGCCGGATGCTGGATTGGTGGCTGTATCTGCAAACGGAACTGCCTGACGACCCTGTTGAGATCGCCAGGCAGTCCAACTGGGGCCA
GGACCAACTCGCCAAAGTATCCACCCTGACCCACAACGAGAACCAAGCCGACCACGAAACTGGACGACCAGCCCTCTACGACAACGCTATCGACACCGAC
TACACACACTCAATCGGCATCCAAAAAGGCCACATCTAACCCCGCGACACGCCGGAGTCAGACACACATTTTGTCGTTTAACCC
GGCGGCGAAATACCGGGTGTGACAGCAGCGTGTGGTAGGAGCTGGTGTTGGCATTGATCAATGCCGAAGAACAGACCACGCTGCCACTGCGGCGGCGAGA
TGAAACGCAACGGTAAGACCTCCGCCAACCGCACCCGGTGGCGGTGCAAAATCTGCGGCGCTTCCACCACCAAGCAGCGCCCCGATATCACCAACTCAGC
AGCCTTCGCAGCATTTATCACCCACCTCACAACCGGTGCGAGCTTGGAAACCGCTGCCGCCGAAGCAGGGTGTCATCCGCGTACCCTGCAACGCCGGTTT
GAACACTTCTGGCTAGTTGATGTCCCCGATCCCACGATCGGGCACGAAGGCCGGGTCTACGACCAGGTCTTTCTTGACGGCACCTACACCGCCGGCGGAT
GCTTGATTGTTGCCGCCACCTTGGATCACGTCATCGCTTGGCACTGGTGCACACGTGAGACCACCCGCGACTACCAAAGGCTCCTCGAACGTATCCCCGC
GCCCCTGATCGCTGTCATCGACGGCGGCCAAGGCGCTGCCAGCGCAATCAAGACATGCTGGCCTGCAACGAAAGTGCAGCGCTGCCTCGTTCACGCCCAA
CGCGTGGTGCGTCGGCACACCACCTCACGCCCCCGCACCGATGCAGGACGAGCGATTTACCAGCTTGCGCTCAACCTTACGAAGATCACCGCTCTTGACG
AGGCGGCCGCGTGGGGTGCGCAACTGCACGAATACGGCACTATCTACCGCGACTGGATGAACCAGAAAACGTTCACAACCGACCCGGCGACACGGCAACG
CACCTGGTCATGGACGCATGAACGCACCCGCAAGGCCTACAACAGTCTCAACCACCTGTGGCGCAACCAGCTGTTATTTGTCTATCTCGACCCACCTGAC
GGTGTCCTCGATGTCAGCCGGATCAAATCCACCACCAACAGCCTGGAAGGCGGCATCAACGCCCAGTTGAAACTGCTTGCCCGCACCCACCGCGGCAGAT
CCGGTGAACACCAACGCCGGATGCTGGATTGGTGGCTGTATCTGCAAACGGAACTGCCTGACGACCCTGTTGAGATCGCCAGGCAGTCCAACTGGGGCCA
GGACCAACTCGCCAAAGTATCCACCCTGACCCACAACGAGAACCAAGCCGACCACGAAACTGGACGACCAGCCCTCTACGACAACGCTATCGACACCGAC
TACACACACTCAATCGGCATCCAAAAAGGCCACATCTAACCCCGCGACACGCCGGAGTCAGACACACATTTTGTCGTTTAACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 161 | 1339 | + | No |
Chemistry : DDE
ORF sequence :
MPKNRPRCHCGGEMKRNGKTSANRTRWRCKICGASTTKQRPDITNSAAFAAFITHLTTGASLETAAAEAGCHPRTLQRRFEHFWLVDVPDPTIGHEGRVY
DQVFLDGTYTAGGCLIVAATLDHVIAWHWCTRETTRDYQRLLERIPAPLIAVIDGGQGAASAIKTCWPATKVQRCLVHAQRVVRRHTTSRPRTDAGRAIY
QLALNLTKITALDEAAAWGAQLHEYGTIYRDWMNQKTFTTDPATRQRTWSWTHERTRKAYNSLNHLWRNQLLFVYLDPPDGVLDVSRIKSTTNSLEGGIN
AQLKLLARTHRGRSGEHQRRMLDWWLYLQTELPDDPVEIARQSNWGQDQLAKVSTLTHNENQADHETGRPALYDNAIDTDYTHSIGIQKGHI
DQVFLDGTYTAGGCLIVAATLDHVIAWHWCTRETTRDYQRLLERIPAPLIAVIDGGQGAASAIKTCWPATKVQRCLVHAQRVVRRHTTSRPRTDAGRAIY
QLALNLTKITALDEAAAWGAQLHEYGTIYRDWMNQKTFTTDPATRQRTWSWTHERTRKAYNSLNHLWRNQLLFVYLDPPDGVLDVSRIKSTTNSLEGGIN
AQLKLLARTHRGRSGEHQRRMLDWWLYLQTELPDDPVEIARQSNWGQDQLAKVSTLTHNENQADHETGRPALYDNAIDTDYTHSIGIQKGHI
Blast result :
Comments
ISCur2 is 87% aa similar to IS3507.
References
1] ISfinder annotation (2013)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.