ISCur2

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010545 ND Corynebacterium urealyticum
Corynebacterium urealyticum DSM 7109
Corynebacterium urealyticum DSM 7111
DNA section
IS Length : 1384 bp

Ends


IR Length : 30/35

IRL : GGGTTAAACGACAAAATGTGTGTCCGGATTCGTCGATTTGTTTGGGTTGA
IRR : GGGTTAAACGACAAAATGTGTGTCTGACTCCGGCGTGTCGCGGGGTTAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTCTGGTGGTGTTCGTGGGCGAGGGC8
GTAGTCCTCAACGATTCCCCGTTAACGC8
TTTTACCCCGCGGCCTCGCCCCACCCCC8

DNA sequence

GGGTTAAACGACAAAATGTGTGTCCGGATTCGTCGATTTGTTTGGGTTGATCAGGGGTAATCCGGAAAGTATATGCTCCTAGAGCATATATCCGCCCCGG
GGCGGCGAAATACCGGGTGTGACAGCAGCGTGTGGTAGGAGCTGGTGTTGGCATTGATCAATGCCGAAGAACAGACCACGCTGCCACTGCGGCGGCGAGA
TGAAACGCAACGGTAAGACCTCCGCCAACCGCACCCGGTGGCGGTGCAAAATCTGCGGCGCTTCCACCACCAAGCAGCGCCCCGATATCACCAACTCAGC
AGCCTTCGCAGCATTTATCACCCACCTCACAACCGGTGCGAGCTTGGAAACCGCTGCCGCCGAAGCAGGGTGTCATCCGCGTACCCTGCAACGCCGGTTT
GAACACTTCTGGCTAGTTGATGTCCCCGATCCCACGATCGGGCACGAAGGCCGGGTCTACGACCAGGTCTTTCTTGACGGCACCTACACCGCCGGCGGAT
GCTTGATTGTTGCCGCCACCTTGGATCACGTCATCGCTTGGCACTGGTGCACACGTGAGACCACCCGCGACTACCAAAGGCTCCTCGAACGTATCCCCGC
GCCCCTGATCGCTGTCATCGACGGCGGCCAAGGCGCTGCCAGCGCAATCAAGACATGCTGGCCTGCAACGAAAGTGCAGCGCTGCCTCGTTCACGCCCAA
CGCGTGGTGCGTCGGCACACCACCTCACGCCCCCGCACCGATGCAGGACGAGCGATTTACCAGCTTGCGCTCAACCTTACGAAGATCACCGCTCTTGACG
AGGCGGCCGCGTGGGGTGCGCAACTGCACGAATACGGCACTATCTACCGCGACTGGATGAACCAGAAAACGTTCACAACCGACCCGGCGACACGGCAACG
CACCTGGTCATGGACGCATGAACGCACCCGCAAGGCCTACAACAGTCTCAACCACCTGTGGCGCAACCAGCTGTTATTTGTCTATCTCGACCCACCTGAC
GGTGTCCTCGATGTCAGCCGGATCAAATCCACCACCAACAGCCTGGAAGGCGGCATCAACGCCCAGTTGAAACTGCTTGCCCGCACCCACCGCGGCAGAT
CCGGTGAACACCAACGCCGGATGCTGGATTGGTGGCTGTATCTGCAAACGGAACTGCCTGACGACCCTGTTGAGATCGCCAGGCAGTCCAACTGGGGCCA
GGACCAACTCGCCAAAGTATCCACCCTGACCCACAACGAGAACCAAGCCGACCACGAAACTGGACGACCAGCCCTCTACGACAACGCTATCGACACCGAC
TACACACACTCAATCGGCATCCAAAAAGGCCACATCTAACCCCGCGACACGCCGGAGTCAGACACACATTTTGTCGTTTAACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa1611339+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKNRPRCHCGGEMKRNGKTSANRTRWRCKICGASTTKQRPDITNSAAFAAFITHLTTGASLETAAAEAGCHPRTLQRRFEHFWLVDVPDPTIGHEGRVY
DQVFLDGTYTAGGCLIVAATLDHVIAWHWCTRETTRDYQRLLERIPAPLIAVIDGGQGAASAIKTCWPATKVQRCLVHAQRVVRRHTTSRPRTDAGRAIY
QLALNLTKITALDEAAAWGAQLHEYGTIYRDWMNQKTFTTDPATRQRTWSWTHERTRKAYNSLNHLWRNQLLFVYLDPPDGVLDVSRIKSTTNSLEGGIN
AQLKLLARTHRGRSGEHQRRMLDWWLYLQTELPDDPVEIARQSNWGQDQLAKVSTLTHNENQADHETGRPALYDNAIDTDYTHSIGIQKGHI

 

Blast result :
Comments
ISCur2 is 87% aa similar to IS3507.
References
1] ISfinder annotation (2013)
2] Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A. (2008) J. Biotechnol. 136 (1-2), 11-21.