ISNpe7

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1004 bp

Ends


IR Length : 21/25

IRL : CGCTCTTCTGTAGCGGATTGTTGGTGAGTTGGAGCAGTAGCTGGAAGTCA
IRR : CGCTCATGGGTAGAGGATTGTTGGTAGCATCATAGCGCAGTTTCGAGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CATCACTGAAATCAAGGTAT0

DNA sequence

CGCTCTTCTGTAGCGGATTGTTGGTGAGTTGGAGCAGTAGCTGGAAGTCACAGCGGGCAAGGGTGGCGCGACCGCGCCACCCGACGAACAATGTTCCCTA
TCAAGACGTTTGTCTCGGAGCGTCGGGCCGCGAATCTGCTGGCACAGATTCGCTGGCGTGACGGCGTCTATTGCCCGCGCTGCCGTGCCGAATCAGCGAT
TCGGTACGGCAGCTATCGGGTGTTTCAACGGTATCTGTGTAAGGATTGCGGCCGGACGTTCAACGACAAGACCGGCACGGTCTTCGAACACTCGGCGATA
CCACTCAGGAAGTGGTATCTGGCCGTCTACACCTATATCCGGCTGAACACGAGCATTCGGCAACTGGATGCCGAACTCGCCGTCTCATACAAGACAGTGT
ACCGGCGCGTCCAGCGCTTCCTGCGGGCGCTGGACGCGCCTCGGCCACAATTAGAAGGCCCGGTGGAAATCGACGAGCTCTACGTCAAGGCAGGGAAGAA
GGGCCGCGAGCGCGACGGCTGGTCGCGCTCGCGTGGCCTGTCCACGCGTGGCCGCGGAACGTATCATGAGGACAAGCCGCCAGTGTTCATCCTCGCTGAC
CGCGGTACGGGAGAAACGTACGTTCACCCGGCGAAAGCCGCTGACGAATCGACGATTCGACTCCTGCTTGGCGACCGCCAGCAGGAGTCGCTGACCGTCT
ACACCGACGGCTTTCGGGCGTACGACCCGCTCAACGGGGACGACGCCTTCGACCGCCAGTGTGTCGTCCACGGCGAGGGTGAATACGCCGATGGAGACGT
GCACGTCAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCCCATCGAGGCGTCTCCAAAGACAAACTCACACCCTATCTCAGAGCG
TTACAGCTTCGCAAACGCGTCCGCCGAAAACCCGGCGACGAAGCGCTCAAAATCATCCTCGAAACTGCGCTATGATGCTACCAACAATCCTCTACCCATG
AGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPIKTFVSERRAANLLAQIRWRDGVYCPRCRAESAIRYGSYRVFQRYLCKDCGRTFNDKTGTVFEHSAIPLRKWYLAVYTYIRLNTSIRQLDAELAVSY
KTVYRRVQRFLRALDAPRPQLEGPVEIDELYVKAGKKGRERDGWSRSRGLSTRGRGTYHEDKPPVFILADRGTGETYVHPAKAADESTIRLLLGDRQQES
LTVYTDGFRAYDPLNGDDAFDRQCVVHGEGEYADGDVHVNTCESHASLARRWLSPHRGVSKDKLTPYLRALQLRKRVRRKPGDEALKIILETAL

 

Blast result :
Comments
ISNpe7 is 90% aa similar to ISH4.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank