ISNamo14
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1067 bp
Ends
IR Length : 8/9
IRL : TACTGACGGCTAAACTTATTTGTGTATAGAGCTTGTTTTTACGGTATGGA
IRR : TACTCACGGACAGAGATAATTATAGATGTTTGGTGGGTCTATAGACGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAACTGTGCA | TA | ATTGGGTTCA | 2 |
GGGGTCAAAA | TA | TGCTACTACA | 2 |
CTTTGGGTAA | TA | TACTGGTCGA | 2 |
TTCTGGGTCA | TA | TGTTATACCA | 2 |
CATCCACAGC | TA | ATTTATTCTG | 2 |
GGTCATATAA | TA | TGAACGAGCA | 2 |
DNA sequence
TACTGACGGCTAAACTTATTTGTGTATAGAGCTTGTTTTTACGGTATGGACTACTTGGAGAAGATCACTGTTGACGAACTCCAAGAGATTTTAGCCGAAG
TTGATGAAAAGAAACCAGTTCAGAGAATTCTTGCCGGTATCGCCTACAAGGACGGTGTCGAGCAGCAGACAATTGCGGAGCGGCATGATGTCCATCCAAA
CACGGTTCGTAACTGGCTGATCCGACTCGAACGGCTCGACTCAGAGCCGTTCGAGTCGGTCGTCTACGATGATCCTCGCCCCGGCCAATCACGCGAACTT
GACGAAGCTGACCACGACCAATTCATCGAAGCTCTCCACGATTCTCCCAAAGAAGTTGGACTTGATGCGCGTGCGTGGACGGTTCCGCTAGCCCAGCAGT
ATCTTGAAGATGAGTTCGATATTGAGTACTGCCGCCGTCATATCCGGCGATTGATGTCCGAGGCCGGGCTGTCCTGGAAGACAGCCCGGCCAGAGTACGT
CAAAGCTGATGAACGAGCTCAGGATGCGTTCCGCAAAGGCTTCAAAAAAAGACGGACGATCTGGACGACGACTACACAATCATAGCAATCGACCAGACAC
GCCAAGAGATCACGACGGATCTTGTCCACGCGTGGTTTCCAGAAAAAACGCGCCCGACACTCCCGGTGTCGGGCGCGTGGGAGAGTCTCAAACTGCTGGG
CGGTGTCACCGCCAGCGGTGACACCTTCTTTCTGAAGTGTGAAGACAACTTTACCGCTGACATCACGACGCGGTTACTGGACGCACTCCAGACCGAGTTC
GGCGAGAAAATCTGTGTTGTCCTGGACAATGCCCCGTATTTCGCGGCGAACGATGTCCACGACTACGTTGAAGACACACCGATCGAACTGTGCCACCTTC
CGCGGGGTTCACCGGAGCTGAACCCCGCGGAAGGGTGCTGGCAGAAACTCAATCAGCGGCTTGGTAACCAACTTTTCGAAGAACTTGATGAACTGAGAGA
AGCCGTCTTCGATGCGCTTGCGTCTATAGACCCACCAAACATCTATAATTATCTCTGTCCGTGAGTA
TTGATGAAAAGAAACCAGTTCAGAGAATTCTTGCCGGTATCGCCTACAAGGACGGTGTCGAGCAGCAGACAATTGCGGAGCGGCATGATGTCCATCCAAA
CACGGTTCGTAACTGGCTGATCCGACTCGAACGGCTCGACTCAGAGCCGTTCGAGTCGGTCGTCTACGATGATCCTCGCCCCGGCCAATCACGCGAACTT
GACGAAGCTGACCACGACCAATTCATCGAAGCTCTCCACGATTCTCCCAAAGAAGTTGGACTTGATGCGCGTGCGTGGACGGTTCCGCTAGCCCAGCAGT
ATCTTGAAGATGAGTTCGATATTGAGTACTGCCGCCGTCATATCCGGCGATTGATGTCCGAGGCCGGGCTGTCCTGGAAGACAGCCCGGCCAGAGTACGT
CAAAGCTGATGAACGAGCTCAGGATGCGTTCCGCAAAGGCTTCAAAAAAAGACGGACGATCTGGACGACGACTACACAATCATAGCAATCGACCAGACAC
GCCAAGAGATCACGACGGATCTTGTCCACGCGTGGTTTCCAGAAAAAACGCGCCCGACACTCCCGGTGTCGGGCGCGTGGGAGAGTCTCAAACTGCTGGG
CGGTGTCACCGCCAGCGGTGACACCTTCTTTCTGAAGTGTGAAGACAACTTTACCGCTGACATCACGACGCGGTTACTGGACGCACTCCAGACCGAGTTC
GGCGAGAAAATCTGTGTTGTCCTGGACAATGCCCCGTATTTCGCGGCGAACGATGTCCACGACTACGTTGAAGACACACCGATCGAACTGTGCCACCTTC
CGCGGGGTTCACCGGAGCTGAACCCCGCGGAAGGGTGCTGGCAGAAACTCAATCAGCGGCTTGGTAACCAACTTTTCGAAGAACTTGATGAACTGAGAGA
AGCCGTCTTCGATGCGCTTGCGTCTATAGACCCACCAAACATCTATAATTATCTCTGTCCGTGAGTA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
540 bp | 179 aa | 46 | 585 | + | No |
Description : First part of the transposase
ORF sequence :
MDYLEKITVDELQEILAEVDEKKPVQRILAGIAYKDGVEQQTIAERHDVHPNTVRNWLIRLERLDSEPFESVVYDDPRPGQSRELDEADHDQFIEALHDS
PKEVGLDARAWTVPLAQQYLEDEFDIEYCRRHIRRLMSEAGLSWKTARPEYVKADERAQDAFRKGFKKRRTIWTTTTQS
PKEVGLDARAWTVPLAQQYLEDEFDIEYCRRHIRRLMSEAGLSWKTARPEYVKADERAQDAFRKGFKKRRTIWTTTTQS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
552 bp | 183 aa | 513 | 1064 | + | No |
Description : Second part of the transposase
ORF sequence :
TSSGCVPQRLQKKTDDLDDDYTIIAIDQTRQEITTDLVHAWFPEKTRPTLPVSGAWESLKLLGGVTASGDTFFLKCEDNFTADITTRLLDALQTEFGEKI
CVVLDNAPYFAANDVHDYVEDTPIELCHLPRGSPELNPAEGCWQKLNQRLGNQLFEELDELREAVFDALASIDPPNIYNYLCP
CVVLDNAPYFAANDVHDYVEDTPIELCHLPRGSPELNPAEGCWQKLNQRLGNQLFEELDELREAVFDALASIDPPNIYNYLCP
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1019 bp | 339 aa | 46 | 1064 | + | Yes |
Chemistry : DDE
ORF sequence :
MDYLEKITVDELQEILAEVDEKKPVQRILAGIAYKDGVEQQTIAERHDVHPNTVRNWLIRLERLDSEPFESVVYDDPRPGQSRELDEADHDQFIEALHDS
PKEVGLDARAWTVPLAQQYLEDEFDIEYCRRHIRRLMSEAGLSWKTARPEYVKADERAQDAFRKGFKKKTDDLDDDYTIIAIDQTRQEITTDLVHAWFPE
KTRPTLPVSGAWESLKLLGGVTASGDTFFLKCEDNFTADITTRLLDALQTEFGEKICVVLDNAPYFAANDVHDYVEDTPIELCHLPRGSPELNPAEGCWQ
KLNQRLGNQLFEELDELREAVFDALASIDPPNIYNYLCP
PKEVGLDARAWTVPLAQQYLEDEFDIEYCRRHIRRLMSEAGLSWKTARPEYVKADERAQDAFRKGFKKKTDDLDDDYTIIAIDQTRQEITTDLVHAWFPE
KTRPTLPVSGAWESLKLLGGVTASGDTFFLKCEDNFTADITTRLLDALQTEFGEKICVVLDNAPYFAANDVHDYVEDTPIELCHLPRGSPELNPAEGCWQ
KLNQRLGNQLFEELDELREAVFDALASIDPPNIYNYLCP
Blast result :
Comments
ISNamo14 is 60% aa similar to ISHvo16.
The ORF is an ORFAB transposase reconstructed in silico by a +1 frameshift probably reflecting ribosomal slippage.
The ORF is an ORFAB transposase reconstructed in silico by a +1 frameshift probably reflecting ribosomal slippage.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513