ISNma7
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001934 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 plasmid pNMAG02 |
DNA section
IS Length : 1059 bp
Ends
IR Length : 12/14
IRL : TAGTAACCGTTAGATCTTTCCGCCCATAGATTGTTGCTACTTCTAATGGA
IRR : TAGTAGACGTTAGAAATAATTGCTCACTTTTGGGACGGTGATCTGATCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACAACTGCAAC | TA | GTTACACACTGA | 2 |
DNA sequence
TAGTAACCGTTAGATCTTTCCGCCCATAGATTGTTGCTACTTCTAATGGATCATCTCGACGAGATCTCCGTCGAAGAACTTCAAGACGCCCTTGATAGGG
TTGAGGGAGCTAAGCCGACACAACGATTGTTAGCGGCGATTGCGTACAAGAACGGCGTGAATCAGACCGAACTTGCGGAATGGCACGACACTGGTCGACG
AACAATCTACAGTTGGCTCATGCGACTCGATACGGACGAACCGCTTGAGCAAGCCGTTTCTGATGCTCATCGATCCGGGAGAAAACGAAAGCTCTCAGAA
AAAGAGCAACAAGAGTTCGAAGAAACAGTCCACAGGTCTCCTGAAGAAGTTGGTTTTGACGCGCCGGCGTGGACGCCGGCGCTTGTCCAGCAGCATCTCG
CCGAGACCTACGATGTCGAGTACTCAATCCCAAGCTGCCGGCGGTTGCTCAAAGAAGCGGGATTGAGCTATCAAAAACCACGCCGTACAGCCGCCGAATC
TGAGGCTGAGGAACAAGAAGCGTTCCGCGAAGAACTCAAAAAAAGCGGCGGGAAATGGACGCCACAGTAGTCTGTATCGATCAAACCAAGAAATCCGTCC
AAGTTGAGCCGCGTGCCGCGTGGTTTCCTCGCGGCACGCGACCGTCTGTTGAATTGTCCGGACAACGCGACTGGACGTGTCTCTTAGGTGCGATCACCGA
GGACGGTGATCGCTTTTTCGCTCGATTCGAAGAGTATGTAACGGCTGATCACGCAAAACACTTCATTCTTGCATCATGTAATGAGTTCGAAGAGGACTTG
ATTATTGTGTTGGATGGAGCGCCGTATTTTCGGGCGTCGGCCGTCACGGACCTGGCGGCCCGTGACGACCTCGCCTTCGTGACATTGCCGGCGTACTCGC
CAGAGCTGAATCCCGTCGAAGAGTGCTGGAGACAGCTCCAAGCGGCACTCAGCAATCGTTTCTTTGGCTCACTCAACGAGCTTACAACAGCGATCGATAC
AGCTATTGATCAGATCACCGTCCCAAAAGTGAGCAATTATTTCTAACGTCTACTA
TTGAGGGAGCTAAGCCGACACAACGATTGTTAGCGGCGATTGCGTACAAGAACGGCGTGAATCAGACCGAACTTGCGGAATGGCACGACACTGGTCGACG
AACAATCTACAGTTGGCTCATGCGACTCGATACGGACGAACCGCTTGAGCAAGCCGTTTCTGATGCTCATCGATCCGGGAGAAAACGAAAGCTCTCAGAA
AAAGAGCAACAAGAGTTCGAAGAAACAGTCCACAGGTCTCCTGAAGAAGTTGGTTTTGACGCGCCGGCGTGGACGCCGGCGCTTGTCCAGCAGCATCTCG
CCGAGACCTACGATGTCGAGTACTCAATCCCAAGCTGCCGGCGGTTGCTCAAAGAAGCGGGATTGAGCTATCAAAAACCACGCCGTACAGCCGCCGAATC
TGAGGCTGAGGAACAAGAAGCGTTCCGCGAAGAACTCAAAAAAAGCGGCGGGAAATGGACGCCACAGTAGTCTGTATCGATCAAACCAAGAAATCCGTCC
AAGTTGAGCCGCGTGCCGCGTGGTTTCCTCGCGGCACGCGACCGTCTGTTGAATTGTCCGGACAACGCGACTGGACGTGTCTCTTAGGTGCGATCACCGA
GGACGGTGATCGCTTTTTCGCTCGATTCGAAGAGTATGTAACGGCTGATCACGCAAAACACTTCATTCTTGCATCATGTAATGAGTTCGAAGAGGACTTG
ATTATTGTGTTGGATGGAGCGCCGTATTTTCGGGCGTCGGCCGTCACGGACCTGGCGGCCCGTGACGACCTCGCCTTCGTGACATTGCCGGCGTACTCGC
CAGAGCTGAATCCCGTCGAAGAGTGCTGGAGACAGCTCCAAGCGGCACTCAGCAATCGTTTCTTTGGCTCACTCAACGAGCTTACAACAGCGATCGATAC
AGCTATTGATCAGATCACCGTCCCAAAAGTGAGCAATTATTTCTAACGTCTACTA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
525 bp | 174 aa | 46 | 570 | + | No |
Description : First part of the transposase
ORF sequence :
MDHLDEISVEELQDALDRVEGAKPTQRLLAAIAYKNGVNQTELAEWHDTGRRTIYSWLMRLDTDEPLEQAVSDAHRSGRKRKLSEKEQQEFEETVHRSPE
EVGFDAPAWTPALVQQHLAETYDVEYSIPSCRRLLKEAGLSYQKPRRTAAESEAEEQEAFREELKKSGGKWTPQ
EVGFDAPAWTPALVQQHLAETYDVEYSIPSCRRLLKEAGLSYQKPRRTAAESEAEEQEAFREELKKSGGKWTPQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
537 bp | 178 aa | 510 | 1046 | + | No |
Description : Second part of the transposase
ORF sequence :
GTRSVPRRTQKKRREMDATVVCIDQTKKSVQVEPRAAWFPRGTRPSVELSGQRDWTCLLGAITEDGDRFFARFEEYVTADHAKHFILASCNEFEEDLIIV
LDGAPYFRASAVTDLAARDDLAFVTLPAYSPELNPVEECWRQLQAALSNRFFGSLNELTTAIDTAIDQITVPKVSNYF
LDGAPYFRASAVTDLAARDDLAFVTLPAYSPELNPVEECWRQLQAALSNRFFGSLNELTTAIDTAIDQITVPKVSNYF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1001 bp | 333 aa | 46 | 1046 | + | Yes |
Chemistry : DDE
ORF sequence :
MDHLDEISVEELQDALDRVEGAKPTQRLLAAIAYKNGVNQTELAEWHDTGRRTIYSWLMRLDTDEPLEQAVSDAHRSGRKRKLSEKEQQEFEETVHRSPE
EVGFDAPAWTPALVQQHLAETYDVEYSIPSCRRLLKEAGLSYQKPRRTAAESEAEEQEAFREELKKKRREMDATVVCIDQTKKSVQVEPRAAWFPRGTRP
SVELSGQRDWTCLLGAITEDGDRFFARFEEYVTADHAKHFILASCNEFEEDLIIVLDGAPYFRASAVTDLAARDDLAFVTLPAYSPELNPVEECWRQLQA
ALSNRFFGSLNELTTAIDTAIDQITVPKVSNYF
EVGFDAPAWTPALVQQHLAETYDVEYSIPSCRRLLKEAGLSYQKPRRTAAESEAEEQEAFREELKKKRREMDATVVCIDQTKKSVQVEPRAAWFPRGTRP
SVELSGQRDWTCLLGAITEDGDRFFARFEEYVTADHAKHFILASCNEFEEDLIIVLDGAPYFRASAVTDLAARDDLAFVTLPAYSPELNPVEECWRQLQA
ALSNRFFGSLNELTTAIDTAIDQITVPKVSNYF
Blast result :
Comments
ISNma7 is 92% aa similar to ISNma6.
The ORF is an ORFAB transposase reconstructed in silico by a +1 frameshift probably reflecting ribosomal slippage.
The ORF is an ORFAB transposase reconstructed in silico by a +1 frameshift probably reflecting ribosomal slippage.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. (2012) BMC Genomics 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. (2012) BMC Genomics 13: 165