ISNpe4
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 696 bp
Ends
IR Length : 10/14
IRL : GGCGCTGTTTCGTTAAGCGTGAAAAGTGAGGCGGCATGATTTTGTGGTGT
IRR : GGTCGTGTTTAGTTTGTAGCATTGTGCCAAACGGCGAAGGCTTGGAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGTTGGGACG | TAGCTCGA | GGGGCTGTCGAT | 8 |
AAAACGAGGCCG | ATGAGGAC | GGTCGTATACTG | 8 |
DNA sequence
GGCGCTGTTTCGTTAAGCGTGAAAAGTGAGGCGGCATGATTTTGTGGTGTCCATGCCAAAAATCGACCGCCTCAGCGGGTGTAGCGACTGGATCGATTTG
AGTTTTGTGGAGCGAGAGCGGACACCACAACAGCTGATGGAACTCGGTATTCGACTTCATCTTGCTGGTCTCTCGCTTTCGAATACCGTTCGAGAGTTAG
AGAAATTTGGTGTCGAACGCAGTCGGAAGGCAGTCCACGATTGGGTTCACAAGTGCGATCTACAGCCGGTAGATAACGCAAAGCCGAATCACGTCGCGCT
CGACGAGACGGTGATTCAACTTGATGAACATCGATATTGGCTGTACACTGCGGTCGATCCAGAAACAAACAAGATACTCCATATTCGGCTGTATTCGACG
ACTACGACCGCATTGACAGAACGGTTCCTGCACGAACTCACTGAGAAACATGACCTCGACGATGCCGTGTTTCTCGTCGATGGAGCAAAACATCTCCAGA
CTGCACTCCGCCGATCTGGGCTTCGATTTCGATACGAAAAACATGGAAATCGGAACGCTGCTGAACGTGTCTTTCGTGATATAAAACGCCGTACCTCTTC
GTTCTCAAATTGTTTTAGTCACGCAAAACCGTCAACCGCAGAATCGTGGCTCCAAGCCTTCGCCGTTTGGCACAATGCTACAAACTAAACACGACC
AGTTTTGTGGAGCGAGAGCGGACACCACAACAGCTGATGGAACTCGGTATTCGACTTCATCTTGCTGGTCTCTCGCTTTCGAATACCGTTCGAGAGTTAG
AGAAATTTGGTGTCGAACGCAGTCGGAAGGCAGTCCACGATTGGGTTCACAAGTGCGATCTACAGCCGGTAGATAACGCAAAGCCGAATCACGTCGCGCT
CGACGAGACGGTGATTCAACTTGATGAACATCGATATTGGCTGTACACTGCGGTCGATCCAGAAACAAACAAGATACTCCATATTCGGCTGTATTCGACG
ACTACGACCGCATTGACAGAACGGTTCCTGCACGAACTCACTGAGAAACATGACCTCGACGATGCCGTGTTTCTCGTCGATGGAGCAAAACATCTCCAGA
CTGCACTCCGCCGATCTGGGCTTCGATTTCGATACGAAAAACATGGAAATCGGAACGCTGCTGAACGTGTCTTTCGTGATATAAAACGCCGTACCTCTTC
GTTCTCAAATTGTTTTAGTCACGCAAAACCGTCAACCGCAGAATCGTGGCTCCAAGCCTTCGCCGTTTGGCACAATGCTACAAACTAAACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 53 | 688 | + | No |
Chemistry : DDE
ORF sequence :
MPKIDRLSGCSDWIDLSFVERERTPQQLMELGIRLHLAGLSLSNTVRELEKFGVERSRKAVHDWVHKCDLQPVDNAKPNHVALDETVIQLDEHRYWLYTA
VDPETNKILHIRLYSTTTTALTERFLHELTEKHDLDDAVFLVDGAKHLQTALRRSGLRFRYEKHGNRNAAERVFRDIKRRTSSFSNCFSHAKPSTAESWL
QAFAVWHNATN
VDPETNKILHIRLYSTTTTALTERFLHELTEKHDLDDAVFLVDGAKHLQTALRRSGLRFRYEKHGNRNAAERVFRDIKRRTSSFSNCFSHAKPSTAESWL
QAFAVWHNATN
Blast result :
Comments
ISNpe4 is 86% aa similar to ISNagr3.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank