ISNpe4

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
DNA section
IS Length : 696 bp

Ends


IR Length : 10/14

IRL : GGCGCTGTTTCGTTAAGCGTGAAAAGTGAGGCGGCATGATTTTGTGGTGT
IRR : GGTCGTGTTTAGTTTGTAGCATTGTGCCAAACGGCGAAGGCTTGGAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AACGTTGGGACGTAGCTCGAGGGGCTGTCGAT8
AAAACGAGGCCGATGAGGACGGTCGTATACTG8

DNA sequence

GGCGCTGTTTCGTTAAGCGTGAAAAGTGAGGCGGCATGATTTTGTGGTGTCCATGCCAAAAATCGACCGCCTCAGCGGGTGTAGCGACTGGATCGATTTG
AGTTTTGTGGAGCGAGAGCGGACACCACAACAGCTGATGGAACTCGGTATTCGACTTCATCTTGCTGGTCTCTCGCTTTCGAATACCGTTCGAGAGTTAG
AGAAATTTGGTGTCGAACGCAGTCGGAAGGCAGTCCACGATTGGGTTCACAAGTGCGATCTACAGCCGGTAGATAACGCAAAGCCGAATCACGTCGCGCT
CGACGAGACGGTGATTCAACTTGATGAACATCGATATTGGCTGTACACTGCGGTCGATCCAGAAACAAACAAGATACTCCATATTCGGCTGTATTCGACG
ACTACGACCGCATTGACAGAACGGTTCCTGCACGAACTCACTGAGAAACATGACCTCGACGATGCCGTGTTTCTCGTCGATGGAGCAAAACATCTCCAGA
CTGCACTCCGCCGATCTGGGCTTCGATTTCGATACGAAAAACATGGAAATCGGAACGCTGCTGAACGTGTCTTTCGTGATATAAAACGCCGTACCTCTTC
GTTCTCAAATTGTTTTAGTCACGCAAAACCGTCAACCGCAGAATCGTGGCTCCAAGCCTTCGCCGTTTGGCACAATGCTACAAACTAAACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa53688+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKIDRLSGCSDWIDLSFVERERTPQQLMELGIRLHLAGLSLSNTVRELEKFGVERSRKAVHDWVHKCDLQPVDNAKPNHVALDETVIQLDEHRYWLYTA
VDPETNKILHIRLYSTTTTALTERFLHELTEKHDLDDAVFLVDGAKHLQTALRRSGLRFRYEKHGNRNAAERVFRDIKRRTSSFSNCFSHAKPSTAESWL
QAFAVWHNATN

 

Blast result :
Comments
ISNpe4 is 86% aa similar to ISNagr3.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank