ISNagr3
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003377 | ND | Natronobacterium gregoryi | Natronobacterium gregoryi SP2 |
DNA section
IS Length : 697 bp
Ends
IR Length : 14/17
IRL : GGTCGTGTTTAGTTAAGGCTGAAGGATGAGGCGAGGAGATTTTCAGCTGG
IRR : CATCGTGTTTAGTTACGCAAATTCCACCAGACAGCGAAGGCTTGCAACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCTATTGTAA | CCTTTGCT | TGGGAAAACCGG | 8 |
DNA sequence
GGTCGTGTTTAGTTAAGGCTGAAGGATGAGGCGAGGAGATTTTCAGCTGGGCTATGGCGAAAATCGCTCGCCTCAGTGGTCGTAGCGACTGGATCGAATT
AGACTTTGTGGAGCGAGAGCGGACACCGCGCCAGCTGATGAAGCTCGGTATTCGGCTACATCTTGCGGGGTTATCGCTTTCGAATACAGTTCGGGAATTA
GAGAAGTTCGGTGTCAAACGGTCGCGGAAAGCTGTTCACGACTGGGTACAGAAAGCAGATCTACAGCTGGCCAGCAACGCGAGTCCGGATCACGTTGCGC
TCGACGAGACGGTGATCCGAATCAACGGCCAACAGTTCTGGCTGTATGCTGCGGTTGATCCCGACACAAACGATTTCCTGCACGTGCGGCTGTTTACAAC
GACTACGACGGCATTGACACAGCGGTTCCTGCAAGAACTTCGTGAGAAACACGACGTCGATGACGCCGTGTTTCTCGTCGATCATGCCCATCATCTAGCG
ACAGCACTCCAGCGAATCGGGCTCCGATTTCGACCCGAGCGACACGGAAATCGGAACGCTATCGAACGTGTTTTTCGGGAGATAAAACGACGCACCTCCT
CGTTCAGTAATAGCTTCAGCCACGTCGATCCATCAACCGCCGAAACGTGGTTGCAAGCCTTCGCTGTCTGGTGGAATTTGCGTAACTAAACACGATG
AGACTTTGTGGAGCGAGAGCGGACACCGCGCCAGCTGATGAAGCTCGGTATTCGGCTACATCTTGCGGGGTTATCGCTTTCGAATACAGTTCGGGAATTA
GAGAAGTTCGGTGTCAAACGGTCGCGGAAAGCTGTTCACGACTGGGTACAGAAAGCAGATCTACAGCTGGCCAGCAACGCGAGTCCGGATCACGTTGCGC
TCGACGAGACGGTGATCCGAATCAACGGCCAACAGTTCTGGCTGTATGCTGCGGTTGATCCCGACACAAACGATTTCCTGCACGTGCGGCTGTTTACAAC
GACTACGACGGCATTGACACAGCGGTTCCTGCAAGAACTTCGTGAGAAACACGACGTCGATGACGCCGTGTTTCTCGTCGATCATGCCCATCATCTAGCG
ACAGCACTCCAGCGAATCGGGCTCCGATTTCGACCCGAGCGACACGGAAATCGGAACGCTATCGAACGTGTTTTTCGGGAGATAAAACGACGCACCTCCT
CGTTCAGTAATAGCTTCAGCCACGTCGATCCATCAACCGCCGAAACGTGGTTGCAAGCCTTCGCTGTCTGGTGGAATTTGCGTAACTAAACACGATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 54 | 689 | + | No |
Chemistry : DDE
ORF sequence :
MAKIARLSGRSDWIELDFVERERTPRQLMKLGIRLHLAGLSLSNTVRELEKFGVKRSRKAVHDWVQKADLQLASNASPDHVALDETVIRINGQQFWLYAA
VDPDTNDFLHVRLFTTTTTALTQRFLQELREKHDVDDAVFLVDHAHHLATALQRIGLRFRPERHGNRNAIERVFREIKRRTSSFSNSFSHVDPSTAETWL
QAFAVWWNLRN
VDPDTNDFLHVRLFTTTTTALTQRFLQELREKHDVDDAVFLVDHAHHLATALQRIGLRFRPERHGNRNAIERVFREIKRRTSSFSNSFSHVDPSTAETWL
QAFAVWWNLRN
Blast result :
Comments
ISNagr3 is 91% aa similar to ISNph1.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank