ISNagr3

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003377 ND Natronobacterium gregoryi
Natronobacterium gregoryi SP2
DNA section
IS Length : 697 bp

Ends


IR Length : 14/17

IRL : GGTCGTGTTTAGTTAAGGCTGAAGGATGAGGCGAGGAGATTTTCAGCTGG
IRR : CATCGTGTTTAGTTACGCAAATTCCACCAGACAGCGAAGGCTTGCAACCA

Insertion site


Left flankDirect repeatRight flankDR Length
AACCTATTGTAACCTTTGCTTGGGAAAACCGG8

DNA sequence

GGTCGTGTTTAGTTAAGGCTGAAGGATGAGGCGAGGAGATTTTCAGCTGGGCTATGGCGAAAATCGCTCGCCTCAGTGGTCGTAGCGACTGGATCGAATT
AGACTTTGTGGAGCGAGAGCGGACACCGCGCCAGCTGATGAAGCTCGGTATTCGGCTACATCTTGCGGGGTTATCGCTTTCGAATACAGTTCGGGAATTA
GAGAAGTTCGGTGTCAAACGGTCGCGGAAAGCTGTTCACGACTGGGTACAGAAAGCAGATCTACAGCTGGCCAGCAACGCGAGTCCGGATCACGTTGCGC
TCGACGAGACGGTGATCCGAATCAACGGCCAACAGTTCTGGCTGTATGCTGCGGTTGATCCCGACACAAACGATTTCCTGCACGTGCGGCTGTTTACAAC
GACTACGACGGCATTGACACAGCGGTTCCTGCAAGAACTTCGTGAGAAACACGACGTCGATGACGCCGTGTTTCTCGTCGATCATGCCCATCATCTAGCG
ACAGCACTCCAGCGAATCGGGCTCCGATTTCGACCCGAGCGACACGGAAATCGGAACGCTATCGAACGTGTTTTTCGGGAGATAAAACGACGCACCTCCT
CGTTCAGTAATAGCTTCAGCCACGTCGATCCATCAACCGCCGAAACGTGGTTGCAAGCCTTCGCTGTCTGGTGGAATTTGCGTAACTAAACACGATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa54689+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKIARLSGRSDWIELDFVERERTPRQLMKLGIRLHLAGLSLSNTVRELEKFGVKRSRKAVHDWVQKADLQLASNASPDHVALDETVIRINGQQFWLYAA
VDPDTNDFLHVRLFTTTTTALTQRFLQELREKHDVDDAVFLVDHAHHLATALQRIGLRFRPERHGNRNAIERVFREIKRRTSSFSNSFSHVDPSTAETWL
QAFAVWWNLRN

 

Blast result :
Comments
ISNagr3 is 91% aa similar to ISNph1.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank