ISGlo6
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001090 | ND | Geobacter lovleyi | Geobacter lovleyi SZ plasmid pGLOV01 |
DNA section
IS Length : 1269 bp
Ends
IR Length : 19/27
IRL : TACTCACGCTTTTTCGGACAGGTAGTTAAGTTTGGTTTGCCGTAGATTAC
IRR : TACTCACGGTTGTCAAGACAGCAAATTGAAGATTTTAAGTTTGGTCGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCTCTATAA | GCTCAGTGTG | 0 |
DNA sequence
TACTCACGCTTTTTCGGACAGGTAGTTAAGTTTGGTTTGCCGTAGATTACGGGGGTAATCTATGATGGCGACCATGCGAACAAAGCGGAGTCCTGAGTTC
AAGGCCAAGATAGCCTTGGCGGCTTTACGTGGCGACAAGACGATAAACGAGCTTGCCACCCTCTACAGTGTACACCCGAATCAGATCACGGCCTGGAAGC
GTCAGGCCCAGGAACATCTGGTTGCGGTCTTTGACAGTAAGAAAGCCAAATCCTCCAAGGCTGATGAAAAGCTGCAGGAGGAACTCTATCGCCAGATAGG
CCAGCTCAAGGTTGAACTTGACTGGCTCAAAAAAAAATCTGGCTTGTAGCACCGCCCGCAAGCGTGAGCTGATCGACTGGCGTCATCCAACGATCAGTAT
TGCCCGGCAGTGTGAGCTGCTTGGAGTAAGCCGCTCTTGCCTATACTATCATCCGGTTCCGGCTTCCAACGAGAACCGGCTTTTGATGCGGCTACTTGAT
GAGGAATACACCCGGCATCCGTTTCTGGGTGTCATCAAGCTCACCAACTGGTTAAGGAGCCAGGGATATTGGCATATAGGCACCCGCAGGGTACGGCGAC
TGTTACGGCTCATGGGCCTGATGGCCATCTATCCCGGCCCGAATCTAAGCAAACCGGCGCCGGGCCACAAGATCTATCCCTATCTGCTGCGCAACGTTGA
GGTAGAGCGGGTTAACCAAGTCTGGAGTGCCGATATAACGTACATTCGGCTCAAGACCGGCTTTGTCTATCTGGTAGCCGTTGTCGACTGGTGCAGCCGG
TACATCCTGGCCTTTGAAATCAGCATCACTCTGGAGGCCGACTTCTGCATCGAAGCGCTCCAGCAGGCGTTAACCAGAGGTACGCCGGAGATATTCAACA
GTGATCAGGGCTCTCAATTCACAAGCCCTCGTCACACGGAAATTCTGCACTTGGCTGGTGTCAGAATCAGCATGGATGGCAAAGGCAGAGCCCTCGACAA
CATTTTTGTCGAACGATTCTGGCGCTCGGTCAAATACGAGGAGGTCTACCTCCATGATTACGAATCAGTGCAAGAGGCCAGAATCGGGTTAAAGCGCTAC
ATCGAGTACTACAACAACGAACGGCAGCATCAATCACTGGGCTACCAGACACCGGCTGAAGTCTACTTCAAAGGTCTGCTCAATGAAGTTGACCAACTGA
AAAACAGGGACAACAACAGGCACGACCAAACTTAAAATCTTCAATTTGCTGTCTTGACAACCGTGAGTA
AAGGCCAAGATAGCCTTGGCGGCTTTACGTGGCGACAAGACGATAAACGAGCTTGCCACCCTCTACAGTGTACACCCGAATCAGATCACGGCCTGGAAGC
GTCAGGCCCAGGAACATCTGGTTGCGGTCTTTGACAGTAAGAAAGCCAAATCCTCCAAGGCTGATGAAAAGCTGCAGGAGGAACTCTATCGCCAGATAGG
CCAGCTCAAGGTTGAACTTGACTGGCTCAAAAAAAAATCTGGCTTGTAGCACCGCCCGCAAGCGTGAGCTGATCGACTGGCGTCATCCAACGATCAGTAT
TGCCCGGCAGTGTGAGCTGCTTGGAGTAAGCCGCTCTTGCCTATACTATCATCCGGTTCCGGCTTCCAACGAGAACCGGCTTTTGATGCGGCTACTTGAT
GAGGAATACACCCGGCATCCGTTTCTGGGTGTCATCAAGCTCACCAACTGGTTAAGGAGCCAGGGATATTGGCATATAGGCACCCGCAGGGTACGGCGAC
TGTTACGGCTCATGGGCCTGATGGCCATCTATCCCGGCCCGAATCTAAGCAAACCGGCGCCGGGCCACAAGATCTATCCCTATCTGCTGCGCAACGTTGA
GGTAGAGCGGGTTAACCAAGTCTGGAGTGCCGATATAACGTACATTCGGCTCAAGACCGGCTTTGTCTATCTGGTAGCCGTTGTCGACTGGTGCAGCCGG
TACATCCTGGCCTTTGAAATCAGCATCACTCTGGAGGCCGACTTCTGCATCGAAGCGCTCCAGCAGGCGTTAACCAGAGGTACGCCGGAGATATTCAACA
GTGATCAGGGCTCTCAATTCACAAGCCCTCGTCACACGGAAATTCTGCACTTGGCTGGTGTCAGAATCAGCATGGATGGCAAAGGCAGAGCCCTCGACAA
CATTTTTGTCGAACGATTCTGGCGCTCGGTCAAATACGAGGAGGTCTACCTCCATGATTACGAATCAGTGCAAGAGGCCAGAATCGGGTTAAAGCGCTAC
ATCGAGTACTACAACAACGAACGGCAGCATCAATCACTGGGCTACCAGACACCGGCTGAAGTCTACTTCAAAGGTCTGCTCAATGAAGTTGACCAACTGA
AAAACAGGGACAACAACAGGCACGACCAAACTTAAAATCTTCAATTTGCTGTCTTGACAACCGTGAGTA
Recoding section
- Recoding by frameshift
- Frame +1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
288 bp | 95 aa | 62 | 349 | + | No |
Description : First part of the transposase
ORF sequence :
MMATMRTKRSPEFKAKIALAALRGDKTINELATLYSVHPNQITAWKRQAQEHLVAVFDSKKAKSSKADEKLQEELYRQIGQLKVELDWLKKKSGL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
936 bp | 311 aa | 300 | 1235 | + | No |
Description : Second part of the transposase
ORF sequence :
MRLLDEEYTRHPFLGVIKLTNWLRSQGYWHIGTRRVRRLLRLMGLMAIYPGPNLSKPAPGHKIYPYLLRNVEVERVNQVWSADITYIRLKTGFVYLVAVV
DWCSRYILAFEISITLEADFCIEALQQALTRGTPEIFNSDQGSQFTSPRHTEILHLAGVRISMDGKGRALDNIFVERFWRSVKYEEVYLHDYESVQEARI
GLKRYIEYYNNERQHQSLGYQTPAEVYFKGLLNEVDQLKNRDNNRHDQT
DWCSRYILAFEISITLEADFCIEALQQALTRGTPEIFNSDQGSQFTSPRHTEILHLAGVRISMDGKGRALDNIFVERFWRSVKYEEVYLHDYESVQEARI
GLKRYIEYYNNERQHQSLGYQTPAEVYFKGLLNEVDQLKNRDNNRHDQT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1174 bp | 390 aa | 62 | 1235 | + | Yes |
Chemistry : DDE
ORF sequence :
MMATMRTKRSPEFKAKIALAALRGDKTINELATLYSVHPNQITAWKRQAQEHLVAVFDSKKAKSSKADEKLQEELYRQIGQLKVELDWLKKNLACSTARK
RELIDWRHPTISIARQCELLGVSRSCLYYHPVPASNENRLLMRLLDEEYTRHPFLGVIKLTNWLRSQGYWHIGTRRVRRLLRLMGLMAIYPGPNLSKPAP
GHKIYPYLLRNVEVERVNQVWSADITYIRLKTGFVYLVAVVDWCSRYILAFEISITLEADFCIEALQQALTRGTPEIFNSDQGSQFTSPRHTEILHLAGV
RISMDGKGRALDNIFVERFWRSVKYEEVYLHDYESVQEARIGLKRYIEYYNNERQHQSLGYQTPAEVYFKGLLNEVDQLKNRDNNRHDQT
RELIDWRHPTISIARQCELLGVSRSCLYYHPVPASNENRLLMRLLDEEYTRHPFLGVIKLTNWLRSQGYWHIGTRRVRRLLRLMGLMAIYPGPNLSKPAP
GHKIYPYLLRNVEVERVNQVWSADITYIRLKTGFVYLVAVVDWCSRYILAFEISITLEADFCIEALQQALTRGTPEIFNSDQGSQFTSPRHTEILHLAGV
RISMDGKGRALDNIFVERFWRSVKYEEVYLHDYESVQEARIGLKRYIEYYNNERQHQSLGYQTPAEVYFKGLLNEVDQLKNRDNNRHDQT
Blast result :
Comments
ISGlo6 is 71% aa similar to ISPpy1.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible +1 frameshift.
This IS has atypic IRs: it begins with 'TA' instead of 'TG'.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible +1 frameshift.
This IS has atypic IRs: it begins with 'TA' instead of 'TG'.
References
1] Mayya A. Petrova (2013) Direct submission to ISfinder
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Meincke,L., Brettin,T., Detter,J.C., Han,C., Tapia,R., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Sung,Y., Fletcher,K.E., Ritalahti,K.M., Loeffler,F.E. and Richardson,P. (2008) Direct submission GenBank