ISfinder Mirror Site

ISHbo1

Family IS6
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
CP001692	ND	Halogeometricum borinquense	Halogeometricum borinquense DSM 11551 plasmid pHBOR02 Halogeometricum borinquense DSM 11551 plasmid pHBOR04

DNA section

IS Length : 745 bp

Ends

IR Length : 15

IRL : GGCACTGTCTAGTTAAGCCAGTTTGAGGAACGAGCAGGTCGTTGAGTTAG
IRR : GGCACTGTCTAGTTAGTGACCTCCTCAACCGGCGTACGTCCGTTGAGCGA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TGTTGCAAGA	AAATAGGC	AGATTGAAAG	8
TATTCAGCAC	GGCTTCGA	CAAACTATCA	8
CTATTGGATC	GCCAATCC	GTTATTGTTC	8
TTAGGAGATA		TTCTGCGTCG	0
TGATCGATAG		TCTTAGACAA	0

DNA sequence

GGCACTGTCTAGTTAAGCCAGTTTGAGGAACGAGCAGGTCGTTGAGTTAGTTGGTCAAGATGCTCGCAGACCTGCTCAGCGAGTGCTTTGAGACGGATTA
TGAAGAAACTTGGGAGCGTGAGCGGACGGCGACACCCGTCAGGGTGTTCGCCGTCCAGCTCCACGCGACCGGGTGTTCGCTTAGAGAGACAAAAGAAATT
CTTCGAATACTCGGCGTTGAACGCTCTCATCAAGCTGTTTGGCAGTGGGTACATCGACTGGCTGACAGCGGTCACAACCCGCCTGAGGCAACGCCGAAGC
GGGTTGCGGTTGATGAGACCGCTGTCAAAATCAACGGTGAGTGGTCTTGGTTGTACGCCGCAATAGACATCGAGACGAAGCTGATTCTCGATGTCGAGTT
GTTTGGACGGCATGGTACCGATCCGGCTGCTGCGTTTCTCCATCGACTTTCCGAGAAACATGATCTCTCAGATGCTGTGTTTCTGGTTGATGGCTATGGC
TATCAGACTGCCCTCTCTCGATTAGGATTGAGCGGTCGGCTTGACTACGTCGAGCGAAACCTCATCGAAAAATGGTTTCATACCCTCAAAATGCGAGTCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCACGGAAGCGTCCGCGAGTGGTTCATACAATTTGCGCAATACTATAACTTTCAACGACCGCATCAATCGCT
CAACGGACGTACGCCGGTTGAGGAGGTCACTAACTAGACAGTGCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
678 bp	225 aa	60	737	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLADLLSECFETDYEETWERERTATPVRVFAVQLHATGCSLRETKEILRILGVERSHQAVWQWVHRLADSGHNPPEATPKRVAVDETAVKINGEWSWLYA
AIDIETKLILDVELFGRHGTDPAAAFLHRLSEKHDLSDAVFLVDGYGYQTALSRLGLSGRLDYVERNLIEKWFHTLKMRVDRFHNSWVGSHGSVREWFIQ
FAQYYNFQRPHQSLNGRTPVEEVTN

Blast result :

Comments

ISHbo1 is 87% aa similar to ISNamo13.
IS_pep_1 is Hbor_33030, Hbor_34490, and Hbor_37420.

References

1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Anderson,I., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank