ISHme1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001871 | ND | Haloferax mediterranei | Haloferax mediterranei ATCC 33500 plasmid pHM500 |
DNA section
IS Length : 740 bp
Ends
IR Length : 15
IRL : GGCACTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCTAG
IRR : GGCACTGTCTAGTTAACCTCCTGAGCTGGCGTTCTTCCGTCGAGCGATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGGTAGGCC | CATTTATTCT | 0 |
DNA sequence
GGCACTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCTAGTGCTTTGCTTGACCTAGAACTGCTCACAGAGTCGTTGGAAACGGCGAATT
ATGAATGTTGGCAGCGGGAGCGGACGGCGAACGCCCTGACGGGCGTCGCCGTCCGACTCCATGCTGCCGGCCTTTCGCTCAGAGAGACAGAAGCAATTCT
GCGTCTTCTCGGCGTAAAACGCTCGTTTCAAGCTATTTTCCAGTGGGTACATCGGTTGGCTGACAGCGTTTCCGACCCGCCGAAGGCGACGCCGAGGCGG
GTCGCGGTCGACGAGACCGCTGTCAAGATCAATGGCAAGTGGTCTTGGTTATATGCTGCAATAGACCTCGACACGAAAGTGATTCTTGACGTTGCGCTGT
TCAAGCGTCACGGGATTAATCCGGCGGCTGCGTTTCTCCACGGAGTCTGTGAGAAACACGACTGTTCAAACACGGTGTTTCTGGCTGATGCCTTCGGCTA
TCGGACTGCCTTCTCTCGATTAGGAGTAAACGGTCGAGTCGACTACACAGAGCGAAACCTCATCGAGAAGTGGTTTCACACGCTCAAGATGCGGGTCGAC
CGTTTCCACAACTCGTGGGTGGGTAGTCGGCAGAGCCTCCGACAGTGGCTTGCACTGTTCGTTCATTACTATAATTTTCAGCGACCGCATCAATCGCTCG
ACGGAAGAACGCCAGCTCAGGAGGTTAACTAGACAGTGCC
ATGAATGTTGGCAGCGGGAGCGGACGGCGAACGCCCTGACGGGCGTCGCCGTCCGACTCCATGCTGCCGGCCTTTCGCTCAGAGAGACAGAAGCAATTCT
GCGTCTTCTCGGCGTAAAACGCTCGTTTCAAGCTATTTTCCAGTGGGTACATCGGTTGGCTGACAGCGTTTCCGACCCGCCGAAGGCGACGCCGAGGCGG
GTCGCGGTCGACGAGACCGCTGTCAAGATCAATGGCAAGTGGTCTTGGTTATATGCTGCAATAGACCTCGACACGAAAGTGATTCTTGACGTTGCGCTGT
TCAAGCGTCACGGGATTAATCCGGCGGCTGCGTTTCTCCACGGAGTCTGTGAGAAACACGACTGTTCAAACACGGTGTTTCTGGCTGATGCCTTCGGCTA
TCGGACTGCCTTCTCTCGATTAGGAGTAAACGGTCGAGTCGACTACACAGAGCGAAACCTCATCGAGAAGTGGTTTCACACGCTCAAGATGCGGGTCGAC
CGTTTCCACAACTCGTGGGTGGGTAGTCGGCAGAGCCTCCGACAGTGGCTTGCACTGTTCGTTCATTACTATAATTTTCAGCGACCGCATCAATCGCTCG
ACGGAAGAACGCCAGCTCAGGAGGTTAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 55 | 732 | + | No |
Chemistry : DDE
ORF sequence :
MLDLELLTESLETANYECWQRERTANALTGVAVRLHAAGLSLRETEAILRLLGVKRSFQAIFQWVHRLADSVSDPPKATPRRVAVDETAVKINGKWSWLY
AAIDLDTKVILDVALFKRHGINPAAAFLHGVCEKHDCSNTVFLADAFGYRTAFSRLGVNGRVDYTERNLIEKWFHTLKMRVDRFHNSWVGSRQSLRQWLA
LFVHYYNFQRPHQSLDGRTPAQEVN
AAIDLDTKVILDVALFKRHGINPAAAFLHGVCEKHDCSNTVFLADAFGYRTAFSRLGVNGRVDYTERNLIEKWFHTLKMRVDRFHNSWVGSRQSLRQWLA
LFVHYYNFQRPHQSLDGRTPAQEVN
Blast result :
Comments
ISHme1 is 79% aa similar to ISNamo13.
References
1] Pfeiffer, F. (2013) Direct submission
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464