ISHme1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001871 ND Haloferax mediterranei
Haloferax mediterranei ATCC 33500 plasmid pHM500
DNA section
IS Length : 740 bp

Ends


IR Length : 15

IRL : GGCACTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCTAG
IRR : GGCACTGTCTAGTTAACCTCCTGAGCTGGCGTTCTTCCGTCGAGCGATTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGGTAGGCCCATTTATTCT0

DNA sequence

GGCACTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCTAGTGCTTTGCTTGACCTAGAACTGCTCACAGAGTCGTTGGAAACGGCGAATT
ATGAATGTTGGCAGCGGGAGCGGACGGCGAACGCCCTGACGGGCGTCGCCGTCCGACTCCATGCTGCCGGCCTTTCGCTCAGAGAGACAGAAGCAATTCT
GCGTCTTCTCGGCGTAAAACGCTCGTTTCAAGCTATTTTCCAGTGGGTACATCGGTTGGCTGACAGCGTTTCCGACCCGCCGAAGGCGACGCCGAGGCGG
GTCGCGGTCGACGAGACCGCTGTCAAGATCAATGGCAAGTGGTCTTGGTTATATGCTGCAATAGACCTCGACACGAAAGTGATTCTTGACGTTGCGCTGT
TCAAGCGTCACGGGATTAATCCGGCGGCTGCGTTTCTCCACGGAGTCTGTGAGAAACACGACTGTTCAAACACGGTGTTTCTGGCTGATGCCTTCGGCTA
TCGGACTGCCTTCTCTCGATTAGGAGTAAACGGTCGAGTCGACTACACAGAGCGAAACCTCATCGAGAAGTGGTTTCACACGCTCAAGATGCGGGTCGAC
CGTTTCCACAACTCGTGGGTGGGTAGTCGGCAGAGCCTCCGACAGTGGCTTGCACTGTTCGTTCATTACTATAATTTTCAGCGACCGCATCAATCGCTCG
ACGGAAGAACGCCAGCTCAGGAGGTTAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
678 bp225 aa55732+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLDLELLTESLETANYECWQRERTANALTGVAVRLHAAGLSLRETEAILRLLGVKRSFQAIFQWVHRLADSVSDPPKATPRRVAVDETAVKINGKWSWLY
AAIDLDTKVILDVALFKRHGINPAAAFLHGVCEKHDCSNTVFLADAFGYRTAFSRLGVNGRVDYTERNLIEKWFHTLKMRVDRFHNSWVGSRQSLRQWLA
LFVHYYNFQRPHQSLDGRTPAQEVN

 

Blast result :
Comments
ISHme1 is 79% aa similar to ISNamo13.
References
1] Pfeiffer, F. (2013) Direct submission
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464