ISHtu2
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001861 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica DSM 5511 plasmid pHTUR03 Haloterrigena turkmenica DSM 5511 plasmid pHTUR01 |
DNA section
IS Length : 743 bp
Ends
IR Length : 15/18
IRL : GGCAGTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGGTCGTAGAGCTAG
IRR : GGCACTGTCTAGTTTAGCACCTCGGTGGGAGTCTGTCCGTTGAGTGACTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGATAGATGG | CGTGTATC | GTATTGATAC | 8 |
| ACGGATATCG | TCTGGCGT | TATCGTTCCA | 8 |
| AATATATTCG | GATGAATCCA | 0 |
DNA sequence
GGCAGTGTCTAGTTAGGCCAGTTTGAGAAGCGAGCAGGTCGTAGAGCTAGTTTGGCCATGACACTCGCAGACCTGCTCAGCGAGTGCTACGCGGCGGAAT
TTGATGAATCTTGGGAGCGTGAGCGGACGGCGACGCCCGTCAGGGTGTTCGCCGTCCGCCTCCACGCGACCGGTTGTTCGCTCCGAGAGACACAATCGAT
TCTTCGCTTGATAGGCGTAGACCGCTCTCATCAAGCACTCTGGCACTGGGTACATCGGCTAGCTGATAGCGTACCAGACCCGCCGACGGCGCAGCCGGCA
CGGGTCGCCATTGATGAAACCGCTGTCAAGATCAACGGCGACTGGTCTTGGGTGTACGCTGCAATAGACCTAGACTCACGACTAATTCTTGATGTCGCAG
TGTTCGGACGGCGAGGCACCGATCCAGCCGCTGCGTTCCTGCATCGATTGACCGAGAAACACAATCTCTCCGACGCTGTGTTTCTCGTCGATGGCTACGG
CTATCTGACTGCCCTCTCTCGATTGGGGTTAAGCGGTCAACTCGACTACGTCGAGCGAAACCTGATCGAAAAGTGGTTTCAGACCTTCAAGATGCGAGTT
GACCGCTTCCATAATTCATGGGTGGGCAGTCGAGCGAGCGTCAGAGAATGGCTTGAACAGTTCGTACACTATTATAACACACAACGACCGCACCAGTCAC
TCAACGGACAGACTCCCACCGAGGTGCTAAACTAGACAGTGCC
TTGATGAATCTTGGGAGCGTGAGCGGACGGCGACGCCCGTCAGGGTGTTCGCCGTCCGCCTCCACGCGACCGGTTGTTCGCTCCGAGAGACACAATCGAT
TCTTCGCTTGATAGGCGTAGACCGCTCTCATCAAGCACTCTGGCACTGGGTACATCGGCTAGCTGATAGCGTACCAGACCCGCCGACGGCGCAGCCGGCA
CGGGTCGCCATTGATGAAACCGCTGTCAAGATCAACGGCGACTGGTCTTGGGTGTACGCTGCAATAGACCTAGACTCACGACTAATTCTTGATGTCGCAG
TGTTCGGACGGCGAGGCACCGATCCAGCCGCTGCGTTCCTGCATCGATTGACCGAGAAACACAATCTCTCCGACGCTGTGTTTCTCGTCGATGGCTACGG
CTATCTGACTGCCCTCTCTCGATTGGGGTTAAGCGGTCAACTCGACTACGTCGAGCGAAACCTGATCGAAAAGTGGTTTCAGACCTTCAAGATGCGAGTT
GACCGCTTCCATAATTCATGGGTGGGCAGTCGAGCGAGCGTCAGAGAATGGCTTGAACAGTTCGTACACTATTATAACACACAACGACCGCACCAGTCAC
TCAACGGACAGACTCCCACCGAGGTGCTAAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 58 | 735 | + | No |
Chemistry : DDE
ORF sequence :
MTLADLLSECYAAEFDESWERERTATPVRVFAVRLHATGCSLRETQSILRLIGVDRSHQALWHWVHRLADSVPDPPTAQPARVAIDETAVKINGDWSWVY
AAIDLDSRLILDVAVFGRRGTDPAAAFLHRLTEKHNLSDAVFLVDGYGYLTALSRLGLSGQLDYVERNLIEKWFQTFKMRVDRFHNSWVGSRASVREWLE
QFVHYYNTQRPHQSLNGQTPTEVLN
AAIDLDSRLILDVAVFGRRGTDPAAAFLHRLTEKHNLSDAVFLVDGYGYLTALSRLGLSGQLDYVERNLIEKWFQTFKMRVDRFHNSWVGSRASVREWLE
QFVHYYNTQRPHQSLNGQTPTEVLN
Blast result :
Comments
ISHtu2 is 89% aa similar to ISNamo13.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank