ISHmu2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 697 bp

Ends


IR Length : 13/14

IRL : GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGGGAGAATTTCTTGCTGG
IRR : GATCGTGTTTAGTTTGGAGCATTGTGCCAGCAGGCGAAGGCTTGAAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGTCGGCGTGCGCTCATTCTCCCAAAC8

DNA sequence

GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGGGAGAATTTCTTGCTGGTCTATGGCAGAAATCGCCCGCCTCAGTGGGAATAGAGAGTGGATTGATTT
GGATTTTGTGGAGCGCGAGCGGACACCCGAGTGGATAATGGCCCGCGGTATTCAATCGCACATTGCGGGCCTCTCGCTGTCGAATACCGTCGAATTACTC
GAAGATCTGGGTGTCCAACGTAGTCGGAAAGCGATTCACGATTGGGTACAAAAAGCCGATCTACAGCCGAAATCGGGTCGATCGCCGAATCAGATCGCGC
TTGACGAAACGGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTATGCTGCTGCAGATCCCGATACAAACGACCTGCTGCACGTCCGCCTCTTTTCGAC
AACCACGACCGCTCTCACCGAAATCTTCTTGCGCGAACTTCGGCAGAAACACGATATCGAAACTGCCGAATTTCTCGTCGATGGCGCCCAACACCTCCAA
ACTGCGCTTCAACGAGCTGGGCTCCGATTTCAGATGTGTCGCGCTGGAAATCGGAATGCCGTCGAACGGATCTTCCGAGAGCTGAAACGTCGAACCTCGT
CGTTTTCGAACTGCTTCAGCCACGTCGAACCCGAAACAGCCGAATCATGGCTTCAAGCCTTCGCCTGCTGGCACAATGCTCCAAACTAAACACGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa54689+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEIARLSGNREWIDLDFVERERTPEWIMARGIQSHIAGLSLSNTVELLEDLGVQRSRKAIHDWVQKADLQPKSGRSPNQIALDETVIRINDQQFWLYAA
ADPDTNDLLHVRLFSTTTTALTEIFLRELRQKHDIETAEFLVDGAQHLQTALQRAGLRFQMCRAGNRNAVERIFRELKRRTSSFSNCFSHVEPETAESWL
QAFACWHNAPN

 

Blast result :
Comments
ISHmu2 is 92% aa similar to ISH14.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277