ISHmu2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 697 bp
Ends
IR Length : 13/14
IRL : GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGGGAGAATTTCTTGCTGG
IRR : GATCGTGTTTAGTTTGGAGCATTGTGCCAGCAGGCGAAGGCTTGAAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGTCGGCGT | GCGCTCAT | TCTCCCAAAC | 8 |
DNA sequence
GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGGGAGAATTTCTTGCTGGTCTATGGCAGAAATCGCCCGCCTCAGTGGGAATAGAGAGTGGATTGATTT
GGATTTTGTGGAGCGCGAGCGGACACCCGAGTGGATAATGGCCCGCGGTATTCAATCGCACATTGCGGGCCTCTCGCTGTCGAATACCGTCGAATTACTC
GAAGATCTGGGTGTCCAACGTAGTCGGAAAGCGATTCACGATTGGGTACAAAAAGCCGATCTACAGCCGAAATCGGGTCGATCGCCGAATCAGATCGCGC
TTGACGAAACGGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTATGCTGCTGCAGATCCCGATACAAACGACCTGCTGCACGTCCGCCTCTTTTCGAC
AACCACGACCGCTCTCACCGAAATCTTCTTGCGCGAACTTCGGCAGAAACACGATATCGAAACTGCCGAATTTCTCGTCGATGGCGCCCAACACCTCCAA
ACTGCGCTTCAACGAGCTGGGCTCCGATTTCAGATGTGTCGCGCTGGAAATCGGAATGCCGTCGAACGGATCTTCCGAGAGCTGAAACGTCGAACCTCGT
CGTTTTCGAACTGCTTCAGCCACGTCGAACCCGAAACAGCCGAATCATGGCTTCAAGCCTTCGCCTGCTGGCACAATGCTCCAAACTAAACACGATC
GGATTTTGTGGAGCGCGAGCGGACACCCGAGTGGATAATGGCCCGCGGTATTCAATCGCACATTGCGGGCCTCTCGCTGTCGAATACCGTCGAATTACTC
GAAGATCTGGGTGTCCAACGTAGTCGGAAAGCGATTCACGATTGGGTACAAAAAGCCGATCTACAGCCGAAATCGGGTCGATCGCCGAATCAGATCGCGC
TTGACGAAACGGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTATGCTGCTGCAGATCCCGATACAAACGACCTGCTGCACGTCCGCCTCTTTTCGAC
AACCACGACCGCTCTCACCGAAATCTTCTTGCGCGAACTTCGGCAGAAACACGATATCGAAACTGCCGAATTTCTCGTCGATGGCGCCCAACACCTCCAA
ACTGCGCTTCAACGAGCTGGGCTCCGATTTCAGATGTGTCGCGCTGGAAATCGGAATGCCGTCGAACGGATCTTCCGAGAGCTGAAACGTCGAACCTCGT
CGTTTTCGAACTGCTTCAGCCACGTCGAACCCGAAACAGCCGAATCATGGCTTCAAGCCTTCGCCTGCTGGCACAATGCTCCAAACTAAACACGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 54 | 689 | + | No |
Chemistry : DDE
ORF sequence :
MAEIARLSGNREWIDLDFVERERTPEWIMARGIQSHIAGLSLSNTVELLEDLGVQRSRKAIHDWVQKADLQPKSGRSPNQIALDETVIRINDQQFWLYAA
ADPDTNDLLHVRLFSTTTTALTEIFLRELRQKHDIETAEFLVDGAQHLQTALQRAGLRFQMCRAGNRNAVERIFRELKRRTSSFSNCFSHVEPETAESWL
QAFACWHNAPN
ADPDTNDLLHVRLFSTTTTALTEIFLRELRQKHDIETAEFLVDGAQHLQTALQRAGLRFQMCRAGNRNAVERIFRELKRRTSSFSNCFSHVEPETAESWL
QAFACWHNAPN
Blast result :
Comments
ISHmu2 is 92% aa similar to ISH14.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277