ISNamo12
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 697 bp
Ends
IR Length : 14/17
IRL : GGCGGTGTTGAGATAAGGTCGAAGGGTGAGGCGGTCAAAAGATTGAGTGC
IRR : GGTAGTGTTTAGATAAGCTGATTCCATGCGAAGGCGAACGCTTGTAACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTCTGGCT | GCTCCCCG | CTCGCCCGTG | 8 |
AGTACCGGCT | GGTTGGCAC | AGCCCAAAGT | 9 |
DNA sequence
GGCGGTGTTGAGATAAGGTCGAAGGGTGAGGCGGTCAAAAGATTGAGTGCTCTATGCTCAGCTTTGACCGCCTCAGCGGCGATAGCGGTTGTATCGAATT
AGATTTTCTGGAGCGAGAGGCGACACCCGAGCCGGCGATGAAGCTCGGTATCCGACTTCATTTGGCTGGCTTATCACTTTCGGATACCGTTTCGATTCTT
GAGAGGTTGGGTGTCGATCGCCATCGAACCACCGTCCATCGGTGGGTTCAGAAGGCCGATCTACAGCCGACCGATGGTGCCGATCCGAATCACGTTGCGG
TCGATGAGACCGTGATTCAGCTCAACTCTGAGCAGTATTGGCTGTACGCTGCTGTCGATCCCGACACGAACCGACTGCTTCATGTTCGGCTCTATCCGAC
GAGAACAAACGCGGTATCCTCGATGTTTCTCTCAGAACTGCGTGAGAAACATCAGGTTGACGACGCGATCTTTCTCGTCGACGGTGCACCGTGGTTACAC
GCGGCCTGCCATCGACACGGGCTCCGATTCCAACACGTCACACATGGGAATCGGAATGCCGTCGAACGTGTCTTTCGCGAAGTAAAACGACGGACAAACC
AATTTTCAAATACGTTTAGCCACGTCGAACCAAGCACCGCCGAAAATTGGTTACAAGCGTTCGCCTTCGCATGGAATCAGCTTATCTAAACACTACC
AGATTTTCTGGAGCGAGAGGCGACACCCGAGCCGGCGATGAAGCTCGGTATCCGACTTCATTTGGCTGGCTTATCACTTTCGGATACCGTTTCGATTCTT
GAGAGGTTGGGTGTCGATCGCCATCGAACCACCGTCCATCGGTGGGTTCAGAAGGCCGATCTACAGCCGACCGATGGTGCCGATCCGAATCACGTTGCGG
TCGATGAGACCGTGATTCAGCTCAACTCTGAGCAGTATTGGCTGTACGCTGCTGTCGATCCCGACACGAACCGACTGCTTCATGTTCGGCTCTATCCGAC
GAGAACAAACGCGGTATCCTCGATGTTTCTCTCAGAACTGCGTGAGAAACATCAGGTTGACGACGCGATCTTTCTCGTCGACGGTGCACCGTGGTTACAC
GCGGCCTGCCATCGACACGGGCTCCGATTCCAACACGTCACACATGGGAATCGGAATGCCGTCGAACGTGTCTTTCGCGAAGTAAAACGACGGACAAACC
AATTTTCAAATACGTTTAGCCACGTCGAACCAAGCACCGCCGAAAATTGGTTACAAGCGTTCGCCTTCGCATGGAATCAGCTTATCTAAACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 54 | 689 | + | No |
Chemistry : DDE
ORF sequence :
MLSFDRLSGDSGCIELDFLEREATPEPAMKLGIRLHLAGLSLSDTVSILERLGVDRHRTTVHRWVQKADLQPTDGADPNHVAVDETVIQLNSEQYWLYAA
VDPDTNRLLHVRLYPTRTNAVSSMFLSELREKHQVDDAIFLVDGAPWLHAACHRHGLRFQHVTHGNRNAVERVFREVKRRTNQFSNTFSHVEPSTAENWL
QAFAFAWNQLI
VDPDTNRLLHVRLYPTRTNAVSSMFLSELREKHQVDDAIFLVDGAPWLHAACHRHGLRFQHVTHGNRNAVERVFREVKRRTNQFSNTFSHVEPSTAENWL
QAFAFAWNQLI
Blast result :
Comments
ISNamo12 is 79% aa similar to ISNamo7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513