ISNamo12

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 697 bp

Ends


IR Length : 14/17

IRL : GGCGGTGTTGAGATAAGGTCGAAGGGTGAGGCGGTCAAAAGATTGAGTGC
IRR : GGTAGTGTTTAGATAAGCTGATTCCATGCGAAGGCGAACGCTTGTAACCA

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTCTGGCTGCTCCCCGCTCGCCCGTG8
AGTACCGGCTGGTTGGCACAGCCCAAAGT9

DNA sequence

GGCGGTGTTGAGATAAGGTCGAAGGGTGAGGCGGTCAAAAGATTGAGTGCTCTATGCTCAGCTTTGACCGCCTCAGCGGCGATAGCGGTTGTATCGAATT
AGATTTTCTGGAGCGAGAGGCGACACCCGAGCCGGCGATGAAGCTCGGTATCCGACTTCATTTGGCTGGCTTATCACTTTCGGATACCGTTTCGATTCTT
GAGAGGTTGGGTGTCGATCGCCATCGAACCACCGTCCATCGGTGGGTTCAGAAGGCCGATCTACAGCCGACCGATGGTGCCGATCCGAATCACGTTGCGG
TCGATGAGACCGTGATTCAGCTCAACTCTGAGCAGTATTGGCTGTACGCTGCTGTCGATCCCGACACGAACCGACTGCTTCATGTTCGGCTCTATCCGAC
GAGAACAAACGCGGTATCCTCGATGTTTCTCTCAGAACTGCGTGAGAAACATCAGGTTGACGACGCGATCTTTCTCGTCGACGGTGCACCGTGGTTACAC
GCGGCCTGCCATCGACACGGGCTCCGATTCCAACACGTCACACATGGGAATCGGAATGCCGTCGAACGTGTCTTTCGCGAAGTAAAACGACGGACAAACC
AATTTTCAAATACGTTTAGCCACGTCGAACCAAGCACCGCCGAAAATTGGTTACAAGCGTTCGCCTTCGCATGGAATCAGCTTATCTAAACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa54689+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSFDRLSGDSGCIELDFLEREATPEPAMKLGIRLHLAGLSLSDTVSILERLGVDRHRTTVHRWVQKADLQPTDGADPNHVAVDETVIQLNSEQYWLYAA
VDPDTNRLLHVRLYPTRTNAVSSMFLSELREKHQVDDAIFLVDGAPWLHAACHRHGLRFQHVTHGNRNAVERVFREVKRRTNQFSNTFSHVEPSTAENWL
QAFAFAWNQLI

 

Blast result :
Comments
ISNamo12 is 79% aa similar to ISNamo7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513