ISNamo9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 696 bp
Ends
IR Length : 15/17
IRL : GGCGGTGTTCAGATAAGGATGAAGAGTGAGGCGGTGCGTTTTTTGAGTGT
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAGGCGAAGGATCGAAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAATTGTGGT | CTTCGAGAGG | 0 | |
CGCCCCATCC | TGATCACCAG | 0 | |
TTCTGTACGA | GTACACACAT | 0 |
DNA sequence
GGCGGTGTTCAGATAAGGATGAAGAGTGAGGCGGTGCGTTTTTTGAGTGTCTATGTTCAAAAACACCCGCCTCAACGGCTGTTTGGACGAGATTGAGTTA
GGTTTTGTGGAACGAGAAGCGACACCGAAATTGCTGATGAAGCTCGGTATTCAACTCCATTTGACTGGACTATCACTTTCGAATACCGTTTCAATTCTTG
AAATATTCGGTGTCGAACGAGCTCGATCTACCGTTCACAACTGGGTTCACAAAGCTGATCTACAGCCCGAATCTAATTGGAGCCCGGATCACGTTGCGGT
CGATGAAACCGTGATCCAACTCAATGATGAGCAGTATTGGCTGTACGCCGCTGTCGATCCCGAAACAAACGAATTACTGCATACAACGCTTGAGCCAACG
ACAAACAAGGTAATTGCTCACGAATTCTTTGCCGAACTTCGTGAGAAACATGACGTTGACGGCGCGGTGTTTCTCATCGATGGCTCGCACTCCTTGAAAC
ATGCCTGTCGCCGTCACAGCCTCGATTTCAGATATGAAAAACATGGAAATCGGAATAGTGTCGAACGTGTCTTTCGAGAGATAAAACGACGAACTACCAG
TTTCTCAAACTGTTTCAGCAACGCCGAAGCAGATACCGCCGACGACTGGCTTCGATCCTTCGCCTTCGCATGGAATCAGCTTATCTGAACACTACC
GGTTTTGTGGAACGAGAAGCGACACCGAAATTGCTGATGAAGCTCGGTATTCAACTCCATTTGACTGGACTATCACTTTCGAATACCGTTTCAATTCTTG
AAATATTCGGTGTCGAACGAGCTCGATCTACCGTTCACAACTGGGTTCACAAAGCTGATCTACAGCCCGAATCTAATTGGAGCCCGGATCACGTTGCGGT
CGATGAAACCGTGATCCAACTCAATGATGAGCAGTATTGGCTGTACGCCGCTGTCGATCCCGAAACAAACGAATTACTGCATACAACGCTTGAGCCAACG
ACAAACAAGGTAATTGCTCACGAATTCTTTGCCGAACTTCGTGAGAAACATGACGTTGACGGCGCGGTGTTTCTCATCGATGGCTCGCACTCCTTGAAAC
ATGCCTGTCGCCGTCACAGCCTCGATTTCAGATATGAAAAACATGGAAATCGGAATAGTGTCGAACGTGTCTTTCGAGAGATAAAACGACGAACTACCAG
TTTCTCAAACTGTTTCAGCAACGCCGAAGCAGATACCGCCGACGACTGGCTTCGATCCTTCGCCTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 53 | 688 | + | No |
Chemistry : DDE
ORF sequence :
MFKNTRLNGCLDEIELGFVEREATPKLLMKLGIQLHLTGLSLSNTVSILEIFGVERARSTVHNWVHKADLQPESNWSPDHVAVDETVIQLNDEQYWLYAA
VDPETNELLHTTLEPTTNKVIAHEFFAELREKHDVDGAVFLIDGSHSLKHACRRHSLDFRYEKHGNRNSVERVFREIKRRTTSFSNCFSNAEADTADDWL
RSFAFAWNQLI
VDPETNELLHTTLEPTTNKVIAHEFFAELREKHDVDGAVFLIDGSHSLKHACRRHSLDFRYEKHGNRNSVERVFREIKRRTTSFSNCFSNAEADTADDWL
RSFAFAWNQLI
Blast result :
Comments
ISNamo9 is 93% aa similar to ISNamo7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513