ISNamo8
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 696 bp
Ends
IR Length : 15/17
IRL : GGCGGTGTTCAGATAAGGATGAAGGGTGAGGCGGTGCGTTTTTTGAGTGT
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAGGCGAATGATCGAAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTATACATC | CTCTCAGC | ATGGGGGACA | 8 |
ATTTGAGTCG | GCTTATAG | AGAGCAGATG | 8 |
CGGTGTCCCG | CGGCCGGG | GTCAGTCGTC | 8 |
TGCGCGGTGA | CCGTGCCC | GGTAGCAACA | 8 |
CTTTTGGAGG | CCTCCGAG | CGTGTCGTTG | 8 |
TGTATAACAC | GTTACTCACG | 0 | |
CTCCTAAGAG | CGACGACACG | 0 |
DNA sequence
GGCGGTGTTCAGATAAGGATGAAGGGTGAGGCGGTGCGTTTTTTGAGTGTCTATGCCAGAAAACGCCCGCCTCAACGACAATTTGGACGAGATCGACTTA
GAGTTTGTTGAACGAGAAGCGACACCACGATTTCTGATGAAGCTTAGTATTCAGCTCCATCTCGCTGGATTATCACTTTCGAATACTGTTTCTATTCTTG
AATTATTTGGTGTCAATCGTGCTCGGTCAACTGTGCATAATTGGGTTCAGAAAGCAGATCTACAGCCTGAGTCTGGTCAAAATCCGGATCACGTCGCCGT
TGACGAGACGGTGATCCGGCTCAATGATGAACAATATTGGCTGTACGCGGCTGTCGATCCTGAAACAAACGAATTGCTATACACAACGCTTGAGCCAACC
ACAAACAGCGTAATTGCTCACGCGTTCTTTGCTGAACTCCGCGAGAAACACGACGTAGAACACGCCGTGTTTCTCATCGATGGCTCGCACTCATTGAAGG
ACGCTTGCCGCCGTCACAGTCTCGATTTCAAATATGAAAAACATGGAAATCGGAATAGCGTCGAACGTGTCTTTCGAGAGATAAAACGTAGAACTACCAG
TTTCTCAAACTGTTTCAGCAACGCCGAAGCAGATACCGCCGACAATTGGCTTCGATCATTCGCCTTCGCATGGAATCAGCTTATCTGAACACTACC
GAGTTTGTTGAACGAGAAGCGACACCACGATTTCTGATGAAGCTTAGTATTCAGCTCCATCTCGCTGGATTATCACTTTCGAATACTGTTTCTATTCTTG
AATTATTTGGTGTCAATCGTGCTCGGTCAACTGTGCATAATTGGGTTCAGAAAGCAGATCTACAGCCTGAGTCTGGTCAAAATCCGGATCACGTCGCCGT
TGACGAGACGGTGATCCGGCTCAATGATGAACAATATTGGCTGTACGCGGCTGTCGATCCTGAAACAAACGAATTGCTATACACAACGCTTGAGCCAACC
ACAAACAGCGTAATTGCTCACGCGTTCTTTGCTGAACTCCGCGAGAAACACGACGTAGAACACGCCGTGTTTCTCATCGATGGCTCGCACTCATTGAAGG
ACGCTTGCCGCCGTCACAGTCTCGATTTCAAATATGAAAAACATGGAAATCGGAATAGCGTCGAACGTGTCTTTCGAGAGATAAAACGTAGAACTACCAG
TTTCTCAAACTGTTTCAGCAACGCCGAAGCAGATACCGCCGACAATTGGCTTCGATCATTCGCCTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 53 | 688 | + | No |
Chemistry : DDE
ORF sequence :
MPENARLNDNLDEIDLEFVEREATPRFLMKLSIQLHLAGLSLSNTVSILELFGVNRARSTVHNWVQKADLQPESGQNPDHVAVDETVIRLNDEQYWLYAA
VDPETNELLYTTLEPTTNSVIAHAFFAELREKHDVEHAVFLIDGSHSLKDACRRHSLDFKYEKHGNRNSVERVFREIKRRTTSFSNCFSNAEADTADNWL
RSFAFAWNQLI
VDPETNELLYTTLEPTTNSVIAHAFFAELREKHDVEHAVFLIDGSHSLKDACRRHSLDFKYEKHGNRNSVERVFREIKRRTTSFSNCFSNAEADTADNWL
RSFAFAWNQLI
Blast result :
Comments
ISNamo8 is 95% aa similar to ISNamo7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513