ISHla9
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001367 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 |
DNA section
IS Length : 1436 bp
Ends
IR Length : 14/16
IRL : CGGTACTTCCCAACCGGTTTGAGAGCTGTAGCTGAAACGTAACTGTCATC
IRR : CGGTACTTCCCGAACGCTGCTTTGTGAACTGTGCTGAGTCACGCTCCATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGAACATT | ATAATAGATA | 0 |
DNA sequence
CGGTACTTCCCAACCGGTTTGAGAGCTGTAGCTGAAACGTAACTGTCATCAAGAAGATGTCTGGTTGAGTGAATGTGTTCACAATTCCTCAGCCAGACGG
GCATCTTTCAGCCACAGACGTGAAAGAACTAGCGGAAGATATCGTTGAACAGCTCCCGCTGCCGGGAATCGAGGGCTCGCCCCTCGATTCCGGCGAGATC
TGGGCCGTCGTTACCCTTGCAGCAGTCAACCAGACTTCTGTCTGGGAAACCTGCAAAGACAACGACAACGCTCCCTGTGACGATACTGTCATGGACTGGC
TCCATACTCTCAACCGAGAGTGGCTAGAGCGGATTGCTAACGACCTACTGAAGGAGATGGCAATGACGATCCTCGACCCCGACCGGTCGAGGATAGTCTC
CATTGATTTCGTCGATAACCCCTACCACGGGACGTACGCCGATGAGAGCGGCGAACTCTGTCGGATGGCTGCTAAAGACGGTACAACAACGTGTCACCGC
TACTGCTCAGCATACCTCGTTTCAAACGGGAAGCCGGTGACGCTGGCTATGACGTACGTGCGGAGTGATGAGAGTGAGGCTGACGCGGTCGAGCGTGTCC
TCGACCGCGTCGAGGCCTATCCCTTCGATATAGACCTTTTGTTGGCTGATCGCGGCTTCTACAACGAACGTATCCTACGTCGGTCACATGACATCGCTGC
GACTGTCGTTCCCGTCCAAAAGAAGGGTAAACGCATGAAGAAGAAGCTAGACACGCATTGTTCGTACATGACGACCTATCGGATGTACAAAGACTGCAAG
CGGGAACTGAAATTCCCACTTGCAGTCGCTGTCTCCTACCAAGCCGGAGATCGTGGCAAGAGCGGAGAGGTCGTTAGAGGGTATGTGGCGTGCGATCTGG
CTGATCGCACGCCGAAGCGGGTCGAACAACTCTATCGGAAACGCTCAGCGATTGAGACCAGCTATCGCGTATTCCGCCAAGCACGGGTGGTAACGACGAC
TCAGGATTCAATCGTCCGCTTTGGGTTCGTCTTGGTTGGGTTCTTGCTGGAGAACCTCTGGCTCGTGCTTCGGTGGGCGGTCGTCGCCCGCCCACGGCGG
GGCGGGCGCGACCTACCCGAAGAGTTCACGTTCAAGACCTTCTCTGACTGGATCAGACACGCATTAGAGGAGGAACTTGAGCGGAGTTGGGAGATCAAAA
TGAACGGCGTCGGTGTGCCGGAAGCGTACGCAGCGGCCGCGGGCTGAGCCAGCCCGCGGCCTCAGGTAAGCGTCTACTGAGCTACAGCACTCGTCTCTGA
CGGCTACATGAGTTCTCTCCGCTCGGTTCTGTTGATCTGTGAAACCTATTCCATTCTTCACAGAGTAACCACGCAGCGTTTGATCCAATGGAGCGTGACT
CAGCACAGTTCACAAAGCAGCGTTCGGGAAGTACCG
GCATCTTTCAGCCACAGACGTGAAAGAACTAGCGGAAGATATCGTTGAACAGCTCCCGCTGCCGGGAATCGAGGGCTCGCCCCTCGATTCCGGCGAGATC
TGGGCCGTCGTTACCCTTGCAGCAGTCAACCAGACTTCTGTCTGGGAAACCTGCAAAGACAACGACAACGCTCCCTGTGACGATACTGTCATGGACTGGC
TCCATACTCTCAACCGAGAGTGGCTAGAGCGGATTGCTAACGACCTACTGAAGGAGATGGCAATGACGATCCTCGACCCCGACCGGTCGAGGATAGTCTC
CATTGATTTCGTCGATAACCCCTACCACGGGACGTACGCCGATGAGAGCGGCGAACTCTGTCGGATGGCTGCTAAAGACGGTACAACAACGTGTCACCGC
TACTGCTCAGCATACCTCGTTTCAAACGGGAAGCCGGTGACGCTGGCTATGACGTACGTGCGGAGTGATGAGAGTGAGGCTGACGCGGTCGAGCGTGTCC
TCGACCGCGTCGAGGCCTATCCCTTCGATATAGACCTTTTGTTGGCTGATCGCGGCTTCTACAACGAACGTATCCTACGTCGGTCACATGACATCGCTGC
GACTGTCGTTCCCGTCCAAAAGAAGGGTAAACGCATGAAGAAGAAGCTAGACACGCATTGTTCGTACATGACGACCTATCGGATGTACAAAGACTGCAAG
CGGGAACTGAAATTCCCACTTGCAGTCGCTGTCTCCTACCAAGCCGGAGATCGTGGCAAGAGCGGAGAGGTCGTTAGAGGGTATGTGGCGTGCGATCTGG
CTGATCGCACGCCGAAGCGGGTCGAACAACTCTATCGGAAACGCTCAGCGATTGAGACCAGCTATCGCGTATTCCGCCAAGCACGGGTGGTAACGACGAC
TCAGGATTCAATCGTCCGCTTTGGGTTCGTCTTGGTTGGGTTCTTGCTGGAGAACCTCTGGCTCGTGCTTCGGTGGGCGGTCGTCGCCCGCCCACGGCGG
GGCGGGCGCGACCTACCCGAAGAGTTCACGTTCAAGACCTTCTCTGACTGGATCAGACACGCATTAGAGGAGGAACTTGAGCGGAGTTGGGAGATCAAAA
TGAACGGCGTCGGTGTGCCGGAAGCGTACGCAGCGGCCGCGGGCTGAGCCAGCCCGCGGCCTCAGGTAAGCGTCTACTGAGCTACAGCACTCGTCTCTGA
CGGCTACATGAGTTCTCTCCGCTCGGTTCTGTTGATCTGTGAAACCTATTCCATTCTTCACAGAGTAACCACGCAGCGTTTGATCCAATGGAGCGTGACT
CAGCACAGTTCACAAAGCAGCGTTCGGGAAGTACCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 75 | 1247 | + | No |
Chemistry : DDE
ORF sequence :
MFTIPQPDGHLSATDVKELAEDIVEQLPLPGIEGSPLDSGEIWAVVTLAAVNQTSVWETCKDNDNAPCDDTVMDWLHTLNREWLERIANDLLKEMAMTIL
DPDRSRIVSIDFVDNPYHGTYADESGELCRMAAKDGTTTCHRYCSAYLVSNGKPVTLAMTYVRSDESEADAVERVLDRVEAYPFDIDLLLADRGFYNERI
LRRSHDIAATVVPVQKKGKRMKKKLDTHCSYMTTYRMYKDCKRELKFPLAVAVSYQAGDRGKSGEVVRGYVACDLADRTPKRVEQLYRKRSAIETSYRVF
RQARVVTTTQDSIVRFGFVLVGFLLENLWLVLRWAVVARPRRGGRDLPEEFTFKTFSDWIRHALEEELERSWEIKMNGVGVPEAYAAAAG
DPDRSRIVSIDFVDNPYHGTYADESGELCRMAAKDGTTTCHRYCSAYLVSNGKPVTLAMTYVRSDESEADAVERVLDRVEAYPFDIDLLLADRGFYNERI
LRRSHDIAATVVPVQKKGKRMKKKLDTHCSYMTTYRMYKDCKRELKFPLAVAVSYQAGDRGKSGEVVRGYVACDLADRTPKRVEQLYRKRSAIETSYRVF
RQARVVTTTQDSIVRFGFVLVGFLLENLWLVLRWAVVARPRRGGRDLPEEFTFKTFSDWIRHALEEELERSWEIKMNGVGVPEAYAAAAG
Blast result :
Comments
ISHla9 is 84% aa similar to ISHla8.
IS_pep_1 is Hlac_3516.
IS_pep_1 is Hlac_3516.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission