ISHla9

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001367 ND Halorubrum lacusprofundi
Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01
DNA section
IS Length : 1436 bp

Ends


IR Length : 14/16

IRL : CGGTACTTCCCAACCGGTTTGAGAGCTGTAGCTGAAACGTAACTGTCATC
IRR : CGGTACTTCCCGAACGCTGCTTTGTGAACTGTGCTGAGTCACGCTCCATT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGAACATTATAATAGATA0

DNA sequence

CGGTACTTCCCAACCGGTTTGAGAGCTGTAGCTGAAACGTAACTGTCATCAAGAAGATGTCTGGTTGAGTGAATGTGTTCACAATTCCTCAGCCAGACGG
GCATCTTTCAGCCACAGACGTGAAAGAACTAGCGGAAGATATCGTTGAACAGCTCCCGCTGCCGGGAATCGAGGGCTCGCCCCTCGATTCCGGCGAGATC
TGGGCCGTCGTTACCCTTGCAGCAGTCAACCAGACTTCTGTCTGGGAAACCTGCAAAGACAACGACAACGCTCCCTGTGACGATACTGTCATGGACTGGC
TCCATACTCTCAACCGAGAGTGGCTAGAGCGGATTGCTAACGACCTACTGAAGGAGATGGCAATGACGATCCTCGACCCCGACCGGTCGAGGATAGTCTC
CATTGATTTCGTCGATAACCCCTACCACGGGACGTACGCCGATGAGAGCGGCGAACTCTGTCGGATGGCTGCTAAAGACGGTACAACAACGTGTCACCGC
TACTGCTCAGCATACCTCGTTTCAAACGGGAAGCCGGTGACGCTGGCTATGACGTACGTGCGGAGTGATGAGAGTGAGGCTGACGCGGTCGAGCGTGTCC
TCGACCGCGTCGAGGCCTATCCCTTCGATATAGACCTTTTGTTGGCTGATCGCGGCTTCTACAACGAACGTATCCTACGTCGGTCACATGACATCGCTGC
GACTGTCGTTCCCGTCCAAAAGAAGGGTAAACGCATGAAGAAGAAGCTAGACACGCATTGTTCGTACATGACGACCTATCGGATGTACAAAGACTGCAAG
CGGGAACTGAAATTCCCACTTGCAGTCGCTGTCTCCTACCAAGCCGGAGATCGTGGCAAGAGCGGAGAGGTCGTTAGAGGGTATGTGGCGTGCGATCTGG
CTGATCGCACGCCGAAGCGGGTCGAACAACTCTATCGGAAACGCTCAGCGATTGAGACCAGCTATCGCGTATTCCGCCAAGCACGGGTGGTAACGACGAC
TCAGGATTCAATCGTCCGCTTTGGGTTCGTCTTGGTTGGGTTCTTGCTGGAGAACCTCTGGCTCGTGCTTCGGTGGGCGGTCGTCGCCCGCCCACGGCGG
GGCGGGCGCGACCTACCCGAAGAGTTCACGTTCAAGACCTTCTCTGACTGGATCAGACACGCATTAGAGGAGGAACTTGAGCGGAGTTGGGAGATCAAAA
TGAACGGCGTCGGTGTGCCGGAAGCGTACGCAGCGGCCGCGGGCTGAGCCAGCCCGCGGCCTCAGGTAAGCGTCTACTGAGCTACAGCACTCGTCTCTGA
CGGCTACATGAGTTCTCTCCGCTCGGTTCTGTTGATCTGTGAAACCTATTCCATTCTTCACAGAGTAACCACGCAGCGTTTGATCCAATGGAGCGTGACT
CAGCACAGTTCACAAAGCAGCGTTCGGGAAGTACCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa751247+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFTIPQPDGHLSATDVKELAEDIVEQLPLPGIEGSPLDSGEIWAVVTLAAVNQTSVWETCKDNDNAPCDDTVMDWLHTLNREWLERIANDLLKEMAMTIL
DPDRSRIVSIDFVDNPYHGTYADESGELCRMAAKDGTTTCHRYCSAYLVSNGKPVTLAMTYVRSDESEADAVERVLDRVEAYPFDIDLLLADRGFYNERI
LRRSHDIAATVVPVQKKGKRMKKKLDTHCSYMTTYRMYKDCKRELKFPLAVAVSYQAGDRGKSGEVVRGYVACDLADRTPKRVEQLYRKRSAIETSYRVF
RQARVVTTTQDSIVRFGFVLVGFLLENLWLVLRWAVVARPRRGGRDLPEEFTFKTFSDWIRHALEEELERSWEIKMNGVGVPEAYAAAAG

 

Blast result :
Comments
ISHla9 is 84% aa similar to ISHla8.
IS_pep_1 is Hlac_3516.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission