ISHla8
- Family ISH3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001365 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 Halorubrum lacusprofundi ATCC 49239 chromosome 2 Halorubrum lacusprofundi ATCC 49239 chromosome 1 Halophilic archaeon DL31 plasmid phalar02 |
DNA section
IS Length : 1460 bp
Ends
IR Length : 10/11
IRL : CGGTACTTCCCAAGCAGCGTAATCAGCTGAATTGAATCGCTAAATTAACC
IRR : CGTTACTTCCCGAACGAGTCGAGAGGGTGCTGCCTGAACGCCACAAAATA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGAGTCATA | ACAGT | TTGCTCAGAC | 5 |
| GGGCGAGCTA | ATTAT | TAGCGGTCAA | 5 |
| GTGGTACCCA | ATGAT | TACGTGTTAC | 5 |
| GACGGCGCAA | ACTAT | TCGGGTTCGT | 5 |
| CGTTTCCTTA | ATTGT | TTGAGGACTA | 5 |
| AAGATAACTT | AGTGTATGCG | 0 | |
| CAGCCACGTT | ATGTTGAGCC | 0 |
DNA sequence
CGGTACTTCCCAAGCAGCGTAATCAGCTGAATTGAATCGCTAAATTAACCACAAGAAAGTGTCTGGATCTGGATGTGTTCACCATACCTGATCCAGACGA
GTACCTTTCGGCGTCGGATGTCAAAGACGTAGCGGAAGAGGTCATTACGCCACTCCCGTTGCCGGGTGTCGAGGGGAGCCCCCTCGACCCCGGCGACATC
TGGCTCGTCGTCATCCTAGCCTGCACTAACCAGAACTCGATTTGGGACACCTGCAACGATACCGAGGGAACGCCGTGTGACGACACTGTCTTGAGGTGGC
TCCACACACTCAACCGTCAGTGGCTTGAGGTCGTTGCCAACCTTCTGCTCGCACGGCTCGCCATGACGATTTTCGACCCTGACCGGTCGAGAACCGTCTC
CATCGACTTCATCGACAATCCCTACCACGGCGAGCACCATGCTGAGAAAGGCGAACTCTGTTCGATGGCTCCTAAGGACGGGACTACGACCTGCCACCGC
TACTGCACGGCGTACGTCGTCTCGAACGGGAAGCCGGTGACGCTGGCGATGACTTACGTCCGCAGTGACGAAGATGAGGCTGACGCGGTCGAGCGCGTGC
TCGCCCGCGTCGAAAACTATCCCTTCGAGATCGATCTCTTGCTTGCCGACAGCGGATTCTACAACGAGCGCGTCATCCGCCGCGCTCGTGATATCGCCCC
AACGGTCGTTCACGTGCCCAAGAAGGGCGAGCGCATGAAGGACAAACTCGAAACTCACAAGTCGTACATGACGACCTATCGCATGTACAAGGACAGCGAG
CGGGAACTGCGCTTCCCGCTCGCGGTCGCTGTCTCCTACCAGAACGGAGATCGAGGCAAGCACGGCGAGGTCGTTCGTGGCTACGTGGCGTGTGGCGTTA
CTGATCGCTCAGCGAAGCAGGTCGAACACCGCTACAGGAAGCGTTCAGGCATCGAAACGACCTATCGCTTACTTCGGCAAGCACGCGGGATCACGACGAC
GCGTGATCCCGTCGTGCGGTTTGCCATCATGTTGGTCGCGGCATTGCTGGAGAACCTGTGGCTGGTGCTACGGTGGGCGGTCGTCGCCCGCCCACGGCGG
GGCGGGCGCGACCTGCCCGAGGAGTTCACGTTCAAGACGTTCTGTGACTGGATTCGTCATGAGCTGGAAGAGGAGTTACGCCGCCGGTGGAAGATCAAAG
CGAACGGGGTTGGAGTGCCAGCATCACAGGCAACGGCCGCGGGCTGACCGGGGTCAGCCCACGGCCTGTCAGTTGGCGGTGAGCGACAGCTTTCGGCAGA
TACCGTCGAAATCCGGGTAACATCGTCTGTCCAAAGCGGTGAATTGGAACTTCCTCGATCTACTTCGTGGGAGCAGCCGAGACTGACCGTCAAATTATAC
AGAAAGTGACTATTTTGTGGCGTTCAGGCAGCACCCTCTCGACTCGTTCGGGAAGTAACG
GTACCTTTCGGCGTCGGATGTCAAAGACGTAGCGGAAGAGGTCATTACGCCACTCCCGTTGCCGGGTGTCGAGGGGAGCCCCCTCGACCCCGGCGACATC
TGGCTCGTCGTCATCCTAGCCTGCACTAACCAGAACTCGATTTGGGACACCTGCAACGATACCGAGGGAACGCCGTGTGACGACACTGTCTTGAGGTGGC
TCCACACACTCAACCGTCAGTGGCTTGAGGTCGTTGCCAACCTTCTGCTCGCACGGCTCGCCATGACGATTTTCGACCCTGACCGGTCGAGAACCGTCTC
CATCGACTTCATCGACAATCCCTACCACGGCGAGCACCATGCTGAGAAAGGCGAACTCTGTTCGATGGCTCCTAAGGACGGGACTACGACCTGCCACCGC
TACTGCACGGCGTACGTCGTCTCGAACGGGAAGCCGGTGACGCTGGCGATGACTTACGTCCGCAGTGACGAAGATGAGGCTGACGCGGTCGAGCGCGTGC
TCGCCCGCGTCGAAAACTATCCCTTCGAGATCGATCTCTTGCTTGCCGACAGCGGATTCTACAACGAGCGCGTCATCCGCCGCGCTCGTGATATCGCCCC
AACGGTCGTTCACGTGCCCAAGAAGGGCGAGCGCATGAAGGACAAACTCGAAACTCACAAGTCGTACATGACGACCTATCGCATGTACAAGGACAGCGAG
CGGGAACTGCGCTTCCCGCTCGCGGTCGCTGTCTCCTACCAGAACGGAGATCGAGGCAAGCACGGCGAGGTCGTTCGTGGCTACGTGGCGTGTGGCGTTA
CTGATCGCTCAGCGAAGCAGGTCGAACACCGCTACAGGAAGCGTTCAGGCATCGAAACGACCTATCGCTTACTTCGGCAAGCACGCGGGATCACGACGAC
GCGTGATCCCGTCGTGCGGTTTGCCATCATGTTGGTCGCGGCATTGCTGGAGAACCTGTGGCTGGTGCTACGGTGGGCGGTCGTCGCCCGCCCACGGCGG
GGCGGGCGCGACCTGCCCGAGGAGTTCACGTTCAAGACGTTCTGTGACTGGATTCGTCATGAGCTGGAAGAGGAGTTACGCCGCCGGTGGAAGATCAAAG
CGAACGGGGTTGGAGTGCCAGCATCACAGGCAACGGCCGCGGGCTGACCGGGGTCAGCCCACGGCCTGTCAGTTGGCGGTGAGCGACAGCTTTCGGCAGA
TACCGTCGAAATCCGGGTAACATCGTCTGTCCAAAGCGGTGAATTGGAACTTCCTCGATCTACTTCGTGGGAGCAGCCGAGACTGACCGTCAAATTATAC
AGAAAGTGACTATTTTGTGGCGTTCAGGCAGCACCCTCTCGACTCGTTCGGGAAGTAACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1173 bp | 390 aa | 75 | 1247 | + | No |
Chemistry : DDE
ORF sequence :
MFTIPDPDEYLSASDVKDVAEEVITPLPLPGVEGSPLDPGDIWLVVILACTNQNSIWDTCNDTEGTPCDDTVLRWLHTLNRQWLEVVANLLLARLAMTIF
DPDRSRTVSIDFIDNPYHGEHHAEKGELCSMAPKDGTTTCHRYCTAYVVSNGKPVTLAMTYVRSDEDEADAVERVLARVENYPFEIDLLLADSGFYNERV
IRRARDIAPTVVHVPKKGERMKDKLETHKSYMTTYRMYKDSERELRFPLAVAVSYQNGDRGKHGEVVRGYVACGVTDRSAKQVEHRYRKRSGIETTYRLL
RQARGITTTRDPVVRFAIMLVAALLENLWLVLRWAVVARPRRGGRDLPEEFTFKTFCDWIRHELEEELRRRWKIKANGVGVPASQATAAG
DPDRSRTVSIDFIDNPYHGEHHAEKGELCSMAPKDGTTTCHRYCTAYVVSNGKPVTLAMTYVRSDEDEADAVERVLARVENYPFEIDLLLADSGFYNERV
IRRARDIAPTVVHVPKKGERMKDKLETHKSYMTTYRMYKDSERELRFPLAVAVSYQNGDRGKHGEVVRGYVACGVTDRSAKQVEHRYRKRSGIETTYRLL
RQARGITTTRDPVVRFAIMLVAALLENLWLVLRWAVVARPRRGGRDLPEEFTFKTFCDWIRHELEEELRRRWKIKANGVGVPASQATAAG
Blast result :
Comments
ISHla8 is 90% aa similar to ISHwa13.
IS_pep_1 is Hlac_0054, Hlac_1024, Hlac_1606, Hlac_1840, Hlac_2857, and Hlac_3439.
IS_pep_1 is Hlac_0054, Hlac_1024, Hlac_1606, Hlac_1840, Hlac_2857, and Hlac_3439.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission