ISHala2
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGFZ01000149 | ND | Halobiforma lacisalsi | Halobiforma lacisalsi AJ5 |
DNA section
IS Length : 1442 bp
Ends
IR Length : 22/26
IRL : GGTCGTGTCCCAAACTCGTCTAGAGTCGTAACTGACTCCTGTGGAAACGG
IRR : GGTCCGGTCCCAAAGCCGTCTAGAGTTTGCCTCTGGTAGCTTCAGTTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTCGTGTCCCAAACTCGTCTAGAGTCGTAACTGACTCCTGTGGAAACGGGGTCACCTCTGGTACCTACCCCGAAGTGACCCATGCACGCCACAATCGAC
GCGCAATTCACAGTTAGTCTCGACCCAGACAAAACGCTACCGCTTGCCACGCTCGCTGAATCTCTTACCGAGATTCAGCTTGAGGCCACTATCCTCGAGG
AGATCGTCAGAAGCCTCGACGAGCGTCTCGTCGAGGCGTATTGCGGGGAGAAACACGCGCGCGGAAACGGCGACCGCCGTTTCCAGCGCGCTGGCACCAC
GACACGTACAGCCGTTACAACTGCTGGAGAACACGAATTCACGCTCCACCACGTCAAAGATACCGCTGCCACTGAGGACGATCCAACCTACTTCCGGCCA
CTCGAGGACCTCGTCGAATTCGACGGACAACGCATCTATCAAGAGGATGTTTCGCTCCAGAGTACCGACCTCGCTACGTCGCTCAGCTTTCGTGATGCCG
TCGCCCACGGCGACGGCTTCACTCCGATGCCTTCGAAAACGACGATCAACCGGCGAGTCCGCGAGTACGGCAGCAAACTCGGTGACTTCGTTCGTGGTCG
GCTTCCTGGGACGAACGCAGACACTGTCGTTCCTGACGGAACGAAGTGTCATAGCCAGGACGATCACTGCACGTACCACGACGTCAACGTCACCCTCGGA
CAGACCACCGAGGAAGACACGGAAACGACGCTTCTAGACGTCAATCTCAACGATTCTTGGGATGAGACAGCAGCGACTCTCGAGGAGACCGAGGCGATCA
CTGACGACGCGACGGTCGTCAGTGACGCCGAGAATGCGCTCGTCGATGCGTTCGAGAATGGTGACCGATCTCACCAGCTCGATCTCGTTCACGTCGGTCG
AACGCTCGGGTACAAGCTCTGGAAAGACGATGCGTTTTCGCTCTCCGAGCGGAAAGCGATCGTCTCTGGCGTTACGAATGATCTGTTCCATCTGAAGAAC
TCTGTCGCACTTCATGCACCGAGGAATGAGCGTTTGGCGATCCGCGAGCGGATCGACCAAACGCTCGAGAACCTTCGGAAAGAATCCTGGAGGTTAGAGC
GTCAAGACTCCCCGAAAGCAGCGGCGTACCTCCGGGAATGGGCGGACGCAACCGTGACGTTCGCGAAACTCGCGCTTGACCAACAGCAGGTTCCGTGGAC
GTCAAACGTGGTTGAACGAGCCATGGGTGAAATCTCGAAGCGGTGTAAGAATCAATGGATGCGGTGGTCAGAAGCGGGGCTAGAGTCGCTTCTCTGGCTG
AATCTAGTGCAGTATGCCGATCCCGAGCAGTTCGCGGCGTTCGCCGACGAACTGCTCGAGCGCTCAGCCAAAACAGCCATCACAATGGAGGTGTCAACTG
AAGCTACCAGAGGCAAACTCTAGACGGCTTTGGGACCGGACC
GCGCAATTCACAGTTAGTCTCGACCCAGACAAAACGCTACCGCTTGCCACGCTCGCTGAATCTCTTACCGAGATTCAGCTTGAGGCCACTATCCTCGAGG
AGATCGTCAGAAGCCTCGACGAGCGTCTCGTCGAGGCGTATTGCGGGGAGAAACACGCGCGCGGAAACGGCGACCGCCGTTTCCAGCGCGCTGGCACCAC
GACACGTACAGCCGTTACAACTGCTGGAGAACACGAATTCACGCTCCACCACGTCAAAGATACCGCTGCCACTGAGGACGATCCAACCTACTTCCGGCCA
CTCGAGGACCTCGTCGAATTCGACGGACAACGCATCTATCAAGAGGATGTTTCGCTCCAGAGTACCGACCTCGCTACGTCGCTCAGCTTTCGTGATGCCG
TCGCCCACGGCGACGGCTTCACTCCGATGCCTTCGAAAACGACGATCAACCGGCGAGTCCGCGAGTACGGCAGCAAACTCGGTGACTTCGTTCGTGGTCG
GCTTCCTGGGACGAACGCAGACACTGTCGTTCCTGACGGAACGAAGTGTCATAGCCAGGACGATCACTGCACGTACCACGACGTCAACGTCACCCTCGGA
CAGACCACCGAGGAAGACACGGAAACGACGCTTCTAGACGTCAATCTCAACGATTCTTGGGATGAGACAGCAGCGACTCTCGAGGAGACCGAGGCGATCA
CTGACGACGCGACGGTCGTCAGTGACGCCGAGAATGCGCTCGTCGATGCGTTCGAGAATGGTGACCGATCTCACCAGCTCGATCTCGTTCACGTCGGTCG
AACGCTCGGGTACAAGCTCTGGAAAGACGATGCGTTTTCGCTCTCCGAGCGGAAAGCGATCGTCTCTGGCGTTACGAATGATCTGTTCCATCTGAAGAAC
TCTGTCGCACTTCATGCACCGAGGAATGAGCGTTTGGCGATCCGCGAGCGGATCGACCAAACGCTCGAGAACCTTCGGAAAGAATCCTGGAGGTTAGAGC
GTCAAGACTCCCCGAAAGCAGCGGCGTACCTCCGGGAATGGGCGGACGCAACCGTGACGTTCGCGAAACTCGCGCTTGACCAACAGCAGGTTCCGTGGAC
GTCAAACGTGGTTGAACGAGCCATGGGTGAAATCTCGAAGCGGTGTAAGAATCAATGGATGCGGTGGTCAGAAGCGGGGCTAGAGTCGCTTCTCTGGCTG
AATCTAGTGCAGTATGCCGATCCCGAGCAGTTCGCGGCGTTCGCCGACGAACTGCTCGAGCGCTCAGCCAAAACAGCCATCACAATGGAGGTGTCAACTG
AAGCTACCAGAGGCAAACTCTAGACGGCTTTGGGACCGGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 83 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MHATIDAQFTVSLDPDKTLPLATLAESLTEIQLEATILEEIVRSLDERLVEAYCGEKHARGNGDRRFQRAGTTTRTAVTTAGEHEFTLHHVKDTAATEDD
PTYFRPLEDLVEFDGQRIYQEDVSLQSTDLATSLSFRDAVAHGDGFTPMPSKTTINRRVREYGSKLGDFVRGRLPGTNADTVVPDGTKCHSQDDHCTYHD
VNVTLGQTTEEDTETTLLDVNLNDSWDETAATLEETEAITDDATVVSDAENALVDAFENGDRSHQLDLVHVGRTLGYKLWKDDAFSLSERKAIVSGVTND
LFHLKNSVALHAPRNERLAIRERIDQTLENLRKESWRLERQDSPKAAAYLREWADATVTFAKLALDQQQVPWTSNVVERAMGEISKRCKNQWMRWSEAGL
ESLLWLNLVQYADPEQFAAFADELLERSAKTAITMEVSTEATRGKL
PTYFRPLEDLVEFDGQRIYQEDVSLQSTDLATSLSFRDAVAHGDGFTPMPSKTTINRRVREYGSKLGDFVRGRLPGTNADTVVPDGTKCHSQDDHCTYHD
VNVTLGQTTEEDTETTLLDVNLNDSWDETAATLEETEAITDDATVVSDAENALVDAFENGDRSHQLDLVHVGRTLGYKLWKDDAFSLSERKAIVSGVTND
LFHLKNSVALHAPRNERLAIRERIDQTLENLRKESWRLERQDSPKAAAYLREWADATVTFAKLALDQQQVPWTSNVVERAMGEISKRCKNQWMRWSEAGL
ESLLWLNLVQYADPEQFAAFADELLERSAKTAITMEVSTEATRGKL
Blast result :
Comments
ISHala2 is 76% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.