ISHala2

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AGFZ01000149 ND Halobiforma lacisalsi
Halobiforma lacisalsi AJ5
DNA section
IS Length : 1442 bp

Ends


IR Length : 22/26

IRL : GGTCGTGTCCCAAACTCGTCTAGAGTCGTAACTGACTCCTGTGGAAACGG
IRR : GGTCCGGTCCCAAAGCCGTCTAGAGTTTGCCTCTGGTAGCTTCAGTTGAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTCGTGTCCCAAACTCGTCTAGAGTCGTAACTGACTCCTGTGGAAACGGGGTCACCTCTGGTACCTACCCCGAAGTGACCCATGCACGCCACAATCGAC
GCGCAATTCACAGTTAGTCTCGACCCAGACAAAACGCTACCGCTTGCCACGCTCGCTGAATCTCTTACCGAGATTCAGCTTGAGGCCACTATCCTCGAGG
AGATCGTCAGAAGCCTCGACGAGCGTCTCGTCGAGGCGTATTGCGGGGAGAAACACGCGCGCGGAAACGGCGACCGCCGTTTCCAGCGCGCTGGCACCAC
GACACGTACAGCCGTTACAACTGCTGGAGAACACGAATTCACGCTCCACCACGTCAAAGATACCGCTGCCACTGAGGACGATCCAACCTACTTCCGGCCA
CTCGAGGACCTCGTCGAATTCGACGGACAACGCATCTATCAAGAGGATGTTTCGCTCCAGAGTACCGACCTCGCTACGTCGCTCAGCTTTCGTGATGCCG
TCGCCCACGGCGACGGCTTCACTCCGATGCCTTCGAAAACGACGATCAACCGGCGAGTCCGCGAGTACGGCAGCAAACTCGGTGACTTCGTTCGTGGTCG
GCTTCCTGGGACGAACGCAGACACTGTCGTTCCTGACGGAACGAAGTGTCATAGCCAGGACGATCACTGCACGTACCACGACGTCAACGTCACCCTCGGA
CAGACCACCGAGGAAGACACGGAAACGACGCTTCTAGACGTCAATCTCAACGATTCTTGGGATGAGACAGCAGCGACTCTCGAGGAGACCGAGGCGATCA
CTGACGACGCGACGGTCGTCAGTGACGCCGAGAATGCGCTCGTCGATGCGTTCGAGAATGGTGACCGATCTCACCAGCTCGATCTCGTTCACGTCGGTCG
AACGCTCGGGTACAAGCTCTGGAAAGACGATGCGTTTTCGCTCTCCGAGCGGAAAGCGATCGTCTCTGGCGTTACGAATGATCTGTTCCATCTGAAGAAC
TCTGTCGCACTTCATGCACCGAGGAATGAGCGTTTGGCGATCCGCGAGCGGATCGACCAAACGCTCGAGAACCTTCGGAAAGAATCCTGGAGGTTAGAGC
GTCAAGACTCCCCGAAAGCAGCGGCGTACCTCCGGGAATGGGCGGACGCAACCGTGACGTTCGCGAAACTCGCGCTTGACCAACAGCAGGTTCCGTGGAC
GTCAAACGTGGTTGAACGAGCCATGGGTGAAATCTCGAAGCGGTGTAAGAATCAATGGATGCGGTGGTCAGAAGCGGGGCTAGAGTCGCTTCTCTGGCTG
AATCTAGTGCAGTATGCCGATCCCGAGCAGTTCGCGGCGTTCGCCGACGAACTGCTCGAGCGCTCAGCCAAAACAGCCATCACAATGGAGGTGTCAACTG
AAGCTACCAGAGGCAAACTCTAGACGGCTTTGGGACCGGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa831423+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHATIDAQFTVSLDPDKTLPLATLAESLTEIQLEATILEEIVRSLDERLVEAYCGEKHARGNGDRRFQRAGTTTRTAVTTAGEHEFTLHHVKDTAATEDD
PTYFRPLEDLVEFDGQRIYQEDVSLQSTDLATSLSFRDAVAHGDGFTPMPSKTTINRRVREYGSKLGDFVRGRLPGTNADTVVPDGTKCHSQDDHCTYHD
VNVTLGQTTEEDTETTLLDVNLNDSWDETAATLEETEAITDDATVVSDAENALVDAFENGDRSHQLDLVHVGRTLGYKLWKDDAFSLSERKAIVSGVTND
LFHLKNSVALHAPRNERLAIRERIDQTLENLRKESWRLERQDSPKAAAYLREWADATVTFAKLALDQQQVPWTSNVVERAMGEISKRCKNQWMRWSEAGL
ESLLWLNLVQYADPEQFAAFADELLERSAKTAITMEVSTEATRGKL

 

Blast result :
Comments
ISHala2 is 76% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.