ISHsa1
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AOME01000027 | ND | Halococcus salifodinae | Halococcus salifodinae DSM 8989 |
DNA section
IS Length : 1467 bp
Ends
IR Length : 20/24
IRL : GGTCGCGTCGCAGAATCCTTTAGAATCGGGACGATACCCGTCGGCAAGAA
IRR : GGTCGCGTCGCAAGACCGTTTAGACTTCACCTCCAGTGACTGTGACCGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGAAATCGATG | AATAACTTAAG | 0 |
DNA sequence
GGTCGCGTCGCAGAATCCTTTAGAATCGGGACGATACCCGTCGGCAAGAAGCCGTAGCTGATACCTGAAAGGAAGGGGACTACTCTGGTGTTGAGATGAG
AGAGTCCCCGATCCAAATCACACTCACCGTTCACTTGGTACTGTCCATTGATCTGACCGAACAGTATCCACTCGCTGCTGTTGCCGAAATACTCACCCAG
CAGAGTATCGAATCCGCCCTCCTTGAGACACTCATCCAAAGCCTCAACGAGCATCTCGTTGAGGCGTACTGCGGCGATAAACACGCATACGGCAACGGTA
CCAAGCGATTCCAACGCTCCGCTACCTCCACTCGCTCGGCGGTTACCACCGCCGGCGAGCACCAATTCACTCTCGACTACGTCGAAGACACCGCTACTGA
CGACGAGAACCCCTCCCACTTCCGCCCTATCGAAGACCTCGTCGACTTCGATGGAAAGAAACGCTATCAACAGGATATCTCCGCTCACAGCGTCGATCTC
GCCACCACGCTCTCCTACCGCGACGCTGCTTCTCACGGCGACGGCTTCGACAAGATGCCGTCGCCGGACACCATCCAGCGCCGCGTCGAAGAATACGGCG
ACGAACTCTCTGAGTTCGTTGCCGACCGTCTTCCCGGCACAGAAGCCGACACTGTCGTCCCTGACGGCACGAAGTGCTACAGTCAGGACGACGACCGCGA
CTACCACGACGTGCAGGTTACCCTCGCAGAAGACACCGCCGAGAACTCGCGGTCGTTGCTGGATGTCTCGGTCAACGCTGTGTGGGATGAGACAGCAGCC
TCATTGGAGGCAATGGATGCGATCACTGACGACGCGAGAGTCGTCAGTGATGCTGAAAATCGTCTCGTCACAGCCTTTACCGACGGAACACGCAAACACC
AACTCGATCTGTCTCACGTTCCACGAACACTCAGCTACAAGCTCTGGGACGACGGCGCACTCTCATTGGATGACCGCAGGGAGGTCACTTCGGAAGTTGC
AGGTGAGCTGTTCCATCTCAAGAACTCCGTCGAGAAGCATCGTCCAGAAGAGGAACGTTCGGCGATCCGCGAGCGGATCGGCCGAACGGAAGAGCGAATA
GAAAAGACGGCATGGCAGTTAGAGCAGCTATCCTCGCCGAAAGCAGCAGATTATCTCCGGAGTGGGTTGCCATCGATGGTGACGTTCGCCGAGGATGCAC
TCGACGGGTTCGAGGTGCCGTGGACCTCGAACCCTGTCGAACGGGCAATGGGTGAAGTCGCCAAACGGTGCAAACGTGACTGGATGCGGTGGACGGAAGA
CGGGTTAGAGGCGCTGCTTCAGCTGCGCCTCGTGAAGTACGCGAATCCAGGTTACTACCGCCAGTTCTTCGATGATCTCCTCCAACGATCAACTCACAAG
AAGATACGCTGTACTGTTTCGGTCACAGTCACTGGAGGTGAAGTCTAAACGGTCTTGCGACGCGACC
AGAGTCCCCGATCCAAATCACACTCACCGTTCACTTGGTACTGTCCATTGATCTGACCGAACAGTATCCACTCGCTGCTGTTGCCGAAATACTCACCCAG
CAGAGTATCGAATCCGCCCTCCTTGAGACACTCATCCAAAGCCTCAACGAGCATCTCGTTGAGGCGTACTGCGGCGATAAACACGCATACGGCAACGGTA
CCAAGCGATTCCAACGCTCCGCTACCTCCACTCGCTCGGCGGTTACCACCGCCGGCGAGCACCAATTCACTCTCGACTACGTCGAAGACACCGCTACTGA
CGACGAGAACCCCTCCCACTTCCGCCCTATCGAAGACCTCGTCGACTTCGATGGAAAGAAACGCTATCAACAGGATATCTCCGCTCACAGCGTCGATCTC
GCCACCACGCTCTCCTACCGCGACGCTGCTTCTCACGGCGACGGCTTCGACAAGATGCCGTCGCCGGACACCATCCAGCGCCGCGTCGAAGAATACGGCG
ACGAACTCTCTGAGTTCGTTGCCGACCGTCTTCCCGGCACAGAAGCCGACACTGTCGTCCCTGACGGCACGAAGTGCTACAGTCAGGACGACGACCGCGA
CTACCACGACGTGCAGGTTACCCTCGCAGAAGACACCGCCGAGAACTCGCGGTCGTTGCTGGATGTCTCGGTCAACGCTGTGTGGGATGAGACAGCAGCC
TCATTGGAGGCAATGGATGCGATCACTGACGACGCGAGAGTCGTCAGTGATGCTGAAAATCGTCTCGTCACAGCCTTTACCGACGGAACACGCAAACACC
AACTCGATCTGTCTCACGTTCCACGAACACTCAGCTACAAGCTCTGGGACGACGGCGCACTCTCATTGGATGACCGCAGGGAGGTCACTTCGGAAGTTGC
AGGTGAGCTGTTCCATCTCAAGAACTCCGTCGAGAAGCATCGTCCAGAAGAGGAACGTTCGGCGATCCGCGAGCGGATCGGCCGAACGGAAGAGCGAATA
GAAAAGACGGCATGGCAGTTAGAGCAGCTATCCTCGCCGAAAGCAGCAGATTATCTCCGGAGTGGGTTGCCATCGATGGTGACGTTCGCCGAGGATGCAC
TCGACGGGTTCGAGGTGCCGTGGACCTCGAACCCTGTCGAACGGGCAATGGGTGAAGTCGCCAAACGGTGCAAACGTGACTGGATGCGGTGGACGGAAGA
CGGGTTAGAGGCGCTGCTTCAGCTGCGCCTCGTGAAGTACGCGAATCCAGGTTACTACCGCCAGTTCTTCGATGATCTCCTCCAACGATCAACTCACAAG
AAGATACGCTGTACTGTTTCGGTCACAGTCACTGGAGGTGAAGTCTAAACGGTCTTGCGACGCGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 96 | 1448 | + | No |
Chemistry : DDE
ORF sequence :
MRESPIQITLTVHLVLSIDLTEQYPLAAVAEILTQQSIESALLETLIQSLNEHLVEAYCGDKHAYGNGTKRFQRSATSTRSAVTTAGEHQFTLDYVEDTA
TDDENPSHFRPIEDLVDFDGKKRYQQDISAHSVDLATTLSYRDAASHGDGFDKMPSPDTIQRRVEEYGDELSEFVADRLPGTEADTVVPDGTKCYSQDDD
RDYHDVQVTLAEDTAENSRSLLDVSVNAVWDETAASLEAMDAITDDARVVSDAENRLVTAFTDGTRKHQLDLSHVPRTLSYKLWDDGALSLDDRREVTSE
VAGELFHLKNSVEKHRPEEERSAIRERIGRTEERIEKTAWQLEQLSSPKAADYLRSGLPSMVTFAEDALDGFEVPWTSNPVERAMGEVAKRCKRDWMRWT
EDGLEALLQLRLVKYANPGYYRQFFDDLLQRSTHKKIRCTVSVTVTGGEV
TDDENPSHFRPIEDLVDFDGKKRYQQDISAHSVDLATTLSYRDAASHGDGFDKMPSPDTIQRRVEEYGDELSEFVADRLPGTEADTVVPDGTKCYSQDDD
RDYHDVQVTLAEDTAENSRSLLDVSVNAVWDETAASLEAMDAITDDARVVSDAENRLVTAFTDGTRKHQLDLSHVPRTLSYKLWDDGALSLDDRREVTSE
VAGELFHLKNSVEKHRPEEERSAIRERIGRTEERIEKTAWQLEQLSSPKAADYLRSGLPSMVTFAEDALDGFEVPWTSNPVERAMGEVAKRCKRDWMRWT
EDGLEALLQLRLVKYANPGYYRQFFDDLLQRSTHKKIRCTVSVTVTGGEV
Blast result :
Comments
ISHsa1 is 78% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.