ISHsa1

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AOME01000027 ND Halococcus salifodinae
Halococcus salifodinae DSM 8989
DNA section
IS Length : 1467 bp

Ends


IR Length : 20/24

IRL : GGTCGCGTCGCAGAATCCTTTAGAATCGGGACGATACCCGTCGGCAAGAA
IRR : GGTCGCGTCGCAAGACCGTTTAGACTTCACCTCCAGTGACTGTGACCGAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGAAATCGATGAATAACTTAAG0

DNA sequence

GGTCGCGTCGCAGAATCCTTTAGAATCGGGACGATACCCGTCGGCAAGAAGCCGTAGCTGATACCTGAAAGGAAGGGGACTACTCTGGTGTTGAGATGAG
AGAGTCCCCGATCCAAATCACACTCACCGTTCACTTGGTACTGTCCATTGATCTGACCGAACAGTATCCACTCGCTGCTGTTGCCGAAATACTCACCCAG
CAGAGTATCGAATCCGCCCTCCTTGAGACACTCATCCAAAGCCTCAACGAGCATCTCGTTGAGGCGTACTGCGGCGATAAACACGCATACGGCAACGGTA
CCAAGCGATTCCAACGCTCCGCTACCTCCACTCGCTCGGCGGTTACCACCGCCGGCGAGCACCAATTCACTCTCGACTACGTCGAAGACACCGCTACTGA
CGACGAGAACCCCTCCCACTTCCGCCCTATCGAAGACCTCGTCGACTTCGATGGAAAGAAACGCTATCAACAGGATATCTCCGCTCACAGCGTCGATCTC
GCCACCACGCTCTCCTACCGCGACGCTGCTTCTCACGGCGACGGCTTCGACAAGATGCCGTCGCCGGACACCATCCAGCGCCGCGTCGAAGAATACGGCG
ACGAACTCTCTGAGTTCGTTGCCGACCGTCTTCCCGGCACAGAAGCCGACACTGTCGTCCCTGACGGCACGAAGTGCTACAGTCAGGACGACGACCGCGA
CTACCACGACGTGCAGGTTACCCTCGCAGAAGACACCGCCGAGAACTCGCGGTCGTTGCTGGATGTCTCGGTCAACGCTGTGTGGGATGAGACAGCAGCC
TCATTGGAGGCAATGGATGCGATCACTGACGACGCGAGAGTCGTCAGTGATGCTGAAAATCGTCTCGTCACAGCCTTTACCGACGGAACACGCAAACACC
AACTCGATCTGTCTCACGTTCCACGAACACTCAGCTACAAGCTCTGGGACGACGGCGCACTCTCATTGGATGACCGCAGGGAGGTCACTTCGGAAGTTGC
AGGTGAGCTGTTCCATCTCAAGAACTCCGTCGAGAAGCATCGTCCAGAAGAGGAACGTTCGGCGATCCGCGAGCGGATCGGCCGAACGGAAGAGCGAATA
GAAAAGACGGCATGGCAGTTAGAGCAGCTATCCTCGCCGAAAGCAGCAGATTATCTCCGGAGTGGGTTGCCATCGATGGTGACGTTCGCCGAGGATGCAC
TCGACGGGTTCGAGGTGCCGTGGACCTCGAACCCTGTCGAACGGGCAATGGGTGAAGTCGCCAAACGGTGCAAACGTGACTGGATGCGGTGGACGGAAGA
CGGGTTAGAGGCGCTGCTTCAGCTGCGCCTCGTGAAGTACGCGAATCCAGGTTACTACCGCCAGTTCTTCGATGATCTCCTCCAACGATCAACTCACAAG
AAGATACGCTGTACTGTTTCGGTCACAGTCACTGGAGGTGAAGTCTAAACGGTCTTGCGACGCGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1353 bp450 aa961448+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRESPIQITLTVHLVLSIDLTEQYPLAAVAEILTQQSIESALLETLIQSLNEHLVEAYCGDKHAYGNGTKRFQRSATSTRSAVTTAGEHQFTLDYVEDTA
TDDENPSHFRPIEDLVDFDGKKRYQQDISAHSVDLATTLSYRDAASHGDGFDKMPSPDTIQRRVEEYGDELSEFVADRLPGTEADTVVPDGTKCYSQDDD
RDYHDVQVTLAEDTAENSRSLLDVSVNAVWDETAASLEAMDAITDDARVVSDAENRLVTAFTDGTRKHQLDLSHVPRTLSYKLWDDGALSLDDRREVTSE
VAGELFHLKNSVEKHRPEEERSAIRERIGRTEERIEKTAWQLEQLSSPKAADYLRSGLPSMVTFAEDALDGFEVPWTSNPVERAMGEVAKRCKRDWMRWT
EDGLEALLQLRLVKYANPGYYRQFFDDLLQRSTHKKIRCTVSVTVTGGEV

 

Blast result :
Comments
ISHsa1 is 78% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.