ISHth2

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AOMF01000123 ND Halococcus thailandensis
Halococcus thailandensis JCM 13552
DNA section
IS Length : 1442 bp

Ends


IR Length : 22/26

IRL : GGTCGTGTCTCAAAGCCGTCTAAAGTCGAGTAGTAACTGACTCCGTGGAA
IRR : GGTCGCGTCCCAAAGTCGTCTAAAGTTCGCCTCTGGTAGCCTCCACTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GAATGCCGTGAAATATCTGAGAAGTATCC8

DNA sequence

GGTCGTGTCTCAAAGCCGTCTAAAGTCGAGTAGTAACTGACTCCGTGGAAGCGGGGTCACCTCTGGTAACCAACACACGAGGTGACCCATGCACGCTGAA
ATCAACGTGCGGTTCGAATTCAGTATCGACGACGACAAAACCGTACCGCTCGCCGCGCTCGGTGAGGAACTCACCGAGCAGAACATCGAGGCGACGGTTC
TCGAACAGCTCGTCGCAAGCCTCGACGAGCAACTCGTCGAGGCGCTCTGTGGCGAGAAACATGCCCGCGGCAACGGCGACGAACGCTTCCAGCGCCGCGG
CACCAAACAACGCTCGGCGGTTACCACCGCCGGCGAACACGACCTTGATCTCCACTACGTCAAGGACACTTCCGCTGACCCCGATGAGGACGCATACTTC
CGTCCCATTGAGGACGTCATCAGCTTCGACGGCCAAAAACAGTATCAGCAGGATATCTCCTTCCAGAGCGTTGATCTCGCAACAGACCTCAGCTATCGTG
ACACTGCCGATCACGGCGACGGCATCCTCTCGATGCCGTCGCGTTCCACCATCAATCGTCGTGTCAAAGAATACGGCAGCAAGCTTGGCGACTTCCTCCA
CGATCAGATCGACGGGATGAACGCCGATACGATTCTCGCTGACGGAACCAAATGCCACAGCCAGGACGACGCTACCGCTTACAACGACGTCCACGTCACG
CTCAGCCAAGACGAAGACGACGCAACCACCCTGCTGGACGTCTCGGTCGACGATACGTGGGAAGACACTGCCACCGCACTCGACGAGATCGAGACGGTCA
CTGACGACGCGAGAGTCGTCAGTGACGCCGAAGAGGGACTCACCGAGGCGTTCACCACCGAGGAGCGCCTCCATCAACTTGATCTGGTTCACGTGCCGCG
AACGACCAGCTACATGCTCTGGCAGGACGGTGCGTTCTCGCTGGACGAGCGCAAGCAGATTGTCTCGGAAGTCGCAAACGACCTCTTCCACCTGAAAAAC
TCGGTCGAGAAGCATCGTCCGAACGAGGAGTGGGCGGCGATCCGCGCGCGGATCGCCACCACGACCCAGCGCATCCGTCATCTCGCGTGGCAGCTGGATC
AGCTTTCCTCGCCGAAGACAGCATCGTATCTGCGGACATGGCTACCATCGATGACTCTATTCGCCGAAGAGGCGGTGGATGGGTTCGAGGTGCCGTGGAC
CTCGAACCCGGTCGAACGAGCAATGGGAGAGGTCTCGAAGCGGTGCAAGAATCAGTGGATGCGGTGGACAGCCGCCGGATTAGAGGCAATGCTTCAGCTA
CGACTCGTGGACTACGCCAACCCTGAACAGTATCAGGCGTTCAAACACGAACTGCTCCAGCGTTCGACCAAAACATCAATAAGATGTGAGTTCTCAGTGG
AGGCTACCAGAGGCGAACTTTAGACGACTTTGGGACGCGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa891423+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHAEINVRFEFSIDDDKTVPLAALGEELTEQNIEATVLEQLVASLDEQLVEALCGEKHARGNGDERFQRRGTKQRSAVTTAGEHDLDLHYVKDTSADPDE
DAYFRPIEDVISFDGQKQYQQDISFQSVDLATDLSYRDTADHGDGILSMPSRSTINRRVKEYGSKLGDFLHDQIDGMNADTILADGTKCHSQDDATAYND
VHVTLSQDEDDATTLLDVSVDDTWEDTATALDEIETVTDDARVVSDAEEGLTEAFTTEERLHQLDLVHVPRTTSYMLWQDGAFSLDERKQIVSEVANDLF
HLKNSVEKHRPNEEWAAIRARIATTTQRIRHLAWQLDQLSSPKTASYLRTWLPSMTLFAEEAVDGFEVPWTSNPVERAMGEVSKRCKNQWMRWTAAGLEA
MLQLRLVDYANPEQYQAFKHELLQRSTKTSIRCEFSVEATRGEL

 

Blast result :
Comments
ISHth2 is 79% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.