ISHth2
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AOMF01000123 | ND | Halococcus thailandensis | Halococcus thailandensis JCM 13552 |
DNA section
IS Length : 1442 bp
Ends
IR Length : 22/26
IRL : GGTCGTGTCTCAAAGCCGTCTAAAGTCGAGTAGTAACTGACTCCGTGGAA
IRR : GGTCGCGTCCCAAAGTCGTCTAAAGTTCGCCTCTGGTAGCCTCCACTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAATGCCGTGA | AATATCTG | AGAAGTATCC | 8 |
DNA sequence
GGTCGTGTCTCAAAGCCGTCTAAAGTCGAGTAGTAACTGACTCCGTGGAAGCGGGGTCACCTCTGGTAACCAACACACGAGGTGACCCATGCACGCTGAA
ATCAACGTGCGGTTCGAATTCAGTATCGACGACGACAAAACCGTACCGCTCGCCGCGCTCGGTGAGGAACTCACCGAGCAGAACATCGAGGCGACGGTTC
TCGAACAGCTCGTCGCAAGCCTCGACGAGCAACTCGTCGAGGCGCTCTGTGGCGAGAAACATGCCCGCGGCAACGGCGACGAACGCTTCCAGCGCCGCGG
CACCAAACAACGCTCGGCGGTTACCACCGCCGGCGAACACGACCTTGATCTCCACTACGTCAAGGACACTTCCGCTGACCCCGATGAGGACGCATACTTC
CGTCCCATTGAGGACGTCATCAGCTTCGACGGCCAAAAACAGTATCAGCAGGATATCTCCTTCCAGAGCGTTGATCTCGCAACAGACCTCAGCTATCGTG
ACACTGCCGATCACGGCGACGGCATCCTCTCGATGCCGTCGCGTTCCACCATCAATCGTCGTGTCAAAGAATACGGCAGCAAGCTTGGCGACTTCCTCCA
CGATCAGATCGACGGGATGAACGCCGATACGATTCTCGCTGACGGAACCAAATGCCACAGCCAGGACGACGCTACCGCTTACAACGACGTCCACGTCACG
CTCAGCCAAGACGAAGACGACGCAACCACCCTGCTGGACGTCTCGGTCGACGATACGTGGGAAGACACTGCCACCGCACTCGACGAGATCGAGACGGTCA
CTGACGACGCGAGAGTCGTCAGTGACGCCGAAGAGGGACTCACCGAGGCGTTCACCACCGAGGAGCGCCTCCATCAACTTGATCTGGTTCACGTGCCGCG
AACGACCAGCTACATGCTCTGGCAGGACGGTGCGTTCTCGCTGGACGAGCGCAAGCAGATTGTCTCGGAAGTCGCAAACGACCTCTTCCACCTGAAAAAC
TCGGTCGAGAAGCATCGTCCGAACGAGGAGTGGGCGGCGATCCGCGCGCGGATCGCCACCACGACCCAGCGCATCCGTCATCTCGCGTGGCAGCTGGATC
AGCTTTCCTCGCCGAAGACAGCATCGTATCTGCGGACATGGCTACCATCGATGACTCTATTCGCCGAAGAGGCGGTGGATGGGTTCGAGGTGCCGTGGAC
CTCGAACCCGGTCGAACGAGCAATGGGAGAGGTCTCGAAGCGGTGCAAGAATCAGTGGATGCGGTGGACAGCCGCCGGATTAGAGGCAATGCTTCAGCTA
CGACTCGTGGACTACGCCAACCCTGAACAGTATCAGGCGTTCAAACACGAACTGCTCCAGCGTTCGACCAAAACATCAATAAGATGTGAGTTCTCAGTGG
AGGCTACCAGAGGCGAACTTTAGACGACTTTGGGACGCGACC
ATCAACGTGCGGTTCGAATTCAGTATCGACGACGACAAAACCGTACCGCTCGCCGCGCTCGGTGAGGAACTCACCGAGCAGAACATCGAGGCGACGGTTC
TCGAACAGCTCGTCGCAAGCCTCGACGAGCAACTCGTCGAGGCGCTCTGTGGCGAGAAACATGCCCGCGGCAACGGCGACGAACGCTTCCAGCGCCGCGG
CACCAAACAACGCTCGGCGGTTACCACCGCCGGCGAACACGACCTTGATCTCCACTACGTCAAGGACACTTCCGCTGACCCCGATGAGGACGCATACTTC
CGTCCCATTGAGGACGTCATCAGCTTCGACGGCCAAAAACAGTATCAGCAGGATATCTCCTTCCAGAGCGTTGATCTCGCAACAGACCTCAGCTATCGTG
ACACTGCCGATCACGGCGACGGCATCCTCTCGATGCCGTCGCGTTCCACCATCAATCGTCGTGTCAAAGAATACGGCAGCAAGCTTGGCGACTTCCTCCA
CGATCAGATCGACGGGATGAACGCCGATACGATTCTCGCTGACGGAACCAAATGCCACAGCCAGGACGACGCTACCGCTTACAACGACGTCCACGTCACG
CTCAGCCAAGACGAAGACGACGCAACCACCCTGCTGGACGTCTCGGTCGACGATACGTGGGAAGACACTGCCACCGCACTCGACGAGATCGAGACGGTCA
CTGACGACGCGAGAGTCGTCAGTGACGCCGAAGAGGGACTCACCGAGGCGTTCACCACCGAGGAGCGCCTCCATCAACTTGATCTGGTTCACGTGCCGCG
AACGACCAGCTACATGCTCTGGCAGGACGGTGCGTTCTCGCTGGACGAGCGCAAGCAGATTGTCTCGGAAGTCGCAAACGACCTCTTCCACCTGAAAAAC
TCGGTCGAGAAGCATCGTCCGAACGAGGAGTGGGCGGCGATCCGCGCGCGGATCGCCACCACGACCCAGCGCATCCGTCATCTCGCGTGGCAGCTGGATC
AGCTTTCCTCGCCGAAGACAGCATCGTATCTGCGGACATGGCTACCATCGATGACTCTATTCGCCGAAGAGGCGGTGGATGGGTTCGAGGTGCCGTGGAC
CTCGAACCCGGTCGAACGAGCAATGGGAGAGGTCTCGAAGCGGTGCAAGAATCAGTGGATGCGGTGGACAGCCGCCGGATTAGAGGCAATGCTTCAGCTA
CGACTCGTGGACTACGCCAACCCTGAACAGTATCAGGCGTTCAAACACGAACTGCTCCAGCGTTCGACCAAAACATCAATAAGATGTGAGTTCTCAGTGG
AGGCTACCAGAGGCGAACTTTAGACGACTTTGGGACGCGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 89 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MHAEINVRFEFSIDDDKTVPLAALGEELTEQNIEATVLEQLVASLDEQLVEALCGEKHARGNGDERFQRRGTKQRSAVTTAGEHDLDLHYVKDTSADPDE
DAYFRPIEDVISFDGQKQYQQDISFQSVDLATDLSYRDTADHGDGILSMPSRSTINRRVKEYGSKLGDFLHDQIDGMNADTILADGTKCHSQDDATAYND
VHVTLSQDEDDATTLLDVSVDDTWEDTATALDEIETVTDDARVVSDAEEGLTEAFTTEERLHQLDLVHVPRTTSYMLWQDGAFSLDERKQIVSEVANDLF
HLKNSVEKHRPNEEWAAIRARIATTTQRIRHLAWQLDQLSSPKTASYLRTWLPSMTLFAEEAVDGFEVPWTSNPVERAMGEVSKRCKNQWMRWTAAGLEA
MLQLRLVDYANPEQYQAFKHELLQRSTKTSIRCEFSVEATRGEL
DAYFRPIEDVISFDGQKQYQQDISFQSVDLATDLSYRDTADHGDGILSMPSRSTINRRVKEYGSKLGDFLHDQIDGMNADTILADGTKCHSQDDATAYND
VHVTLSQDEDDATTLLDVSVDDTWEDTATALDEIETVTDDARVVSDAEEGLTEAFTTEERLHQLDLVHVPRTTSYMLWQDGAFSLDERKQIVSEVANDLF
HLKNSVEKHRPNEEWAAIRARIATTTQRIRHLAWQLDQLSSPKTASYLRTWLPSMTLFAEEAVDGFEVPWTSNPVERAMGEVSKRCKNQWMRWTAAGLEA
MLQLRLVDYANPEQYQAFKHELLQRSTKTSIRCEFSVEATRGEL
Blast result :
Comments
ISHth2 is 79% aa similar to ISH6.
References
1] ISfinder annotation (2013)
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.